Wall clock time and date at job start Tue Mar 31 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52833 * 1 3 3 H 1.11121 * 106.62646 * 2 1 4 4 C 1.51518 * 111.72770 * 242.92962 * 2 1 3 5 5 C 1.51858 * 115.73617 * 277.85137 * 4 2 1 6 6 C 1.54407 * 108.01221 * 197.59348 * 5 4 2 7 7 C 1.53116 * 111.03191 * 80.05456 * 5 4 2 8 8 C 1.52482 * 112.43851 * 316.31892 * 5 4 2 9 9 C 1.52645 * 110.80079 * 52.58353 * 8 5 4 10 10 C 1.52258 * 110.59878 * 115.94242 * 2 1 3 11 11 H 1.09383 * 109.43586 * 194.73683 * 10 2 1 12 12 N 1.47126 * 109.56403 * 313.88119 * 10 2 1 13 13 C 1.46901 * 110.99977 * 206.41337 * 12 10 2 14 14 C 1.52996 * 109.47485 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47425 * 179.97438 * 14 13 12 16 16 S 1.81000 * 109.47287 * 179.97438 * 15 14 13 17 17 C 1.76196 * 100.00031 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00305 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00114 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99603 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00098 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46919 * 89.99733 * 21 19 17 23 23 H 1.48499 * 109.47176 * 209.99553 * 21 19 17 24 24 H 1.48504 * 109.47061 * 329.99989 * 21 19 17 25 25 H 1.09000 * 109.47267 * 304.05869 * 1 2 3 26 26 H 1.09002 * 109.46528 * 64.06144 * 1 2 3 27 27 H 1.08996 * 109.47376 * 184.05326 * 1 2 3 28 28 H 1.10244 * 108.74448 * 155.43923 * 4 2 1 29 29 H 1.10214 * 108.79687 * 40.37845 * 4 2 1 30 30 H 1.09005 * 109.46692 * 181.68990 * 6 5 4 31 31 H 1.08996 * 109.46913 * 301.68171 * 6 5 4 32 32 H 1.08998 * 109.47239 * 61.68741 * 6 5 4 33 33 H 1.08995 * 109.47330 * 294.88480 * 7 5 4 34 34 H 1.09002 * 109.46872 * 54.88497 * 7 5 4 35 35 H 1.09000 * 109.46894 * 174.87740 * 7 5 4 36 36 H 1.09306 * 109.41016 * 291.99380 * 8 5 4 37 37 H 1.09303 * 109.40887 * 173.16008 * 8 5 4 38 38 H 1.09538 * 108.99103 * 179.60995 * 9 8 5 39 39 H 1.08556 * 110.74270 * 60.19835 * 9 8 5 40 40 H 1.00896 * 111.00225 * 330.36717 * 12 10 2 41 41 H 1.09004 * 109.46958 * 299.99791 * 13 12 10 42 42 H 1.09000 * 109.46890 * 59.99703 * 13 12 10 43 43 H 1.08995 * 109.47025 * 300.00152 * 14 13 12 44 44 H 1.09000 * 109.47279 * 59.99966 * 14 13 12 45 45 H 1.08995 * 109.47205 * 300.00118 * 15 14 13 46 46 H 1.08997 * 109.47122 * 60.00234 * 15 14 13 47 47 H 0.96999 * 119.99751 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5283 0.0000 0.0000 3 1 1.8463 1.0648 0.0000 4 6 2.0892 -0.6405 -1.2533 5 6 2.1598 -2.1575 -1.2437 6 6 3.1343 -2.5972 -2.3577 7 6 0.7940 -2.7731 -1.5600 8 6 2.6865 -2.7072 0.0774 9 6 1.8954 -2.1414 1.2539 10 6 2.0640 -0.6235 1.2816 11 1 3.1258 -0.3831 1.3872 12 7 1.3378 -0.0746 2.4375 13 6 2.1637 -0.1269 3.6512 14 6 1.3768 0.4517 4.8289 15 6 2.2367 0.3966 6.0932 16 16 1.3060 1.0818 7.4862 17 6 2.4988 0.8998 8.7701 18 1 3.4645 0.4679 8.5529 19 6 2.1973 1.3116 10.0610 20 7 1.0205 1.8385 10.3257 21 14 3.4622 1.1194 11.4221 22 1 4.3016 2.3423 11.4941 23 1 2.7672 0.9190 12.7190 24 1 4.3234 -0.0559 11.1351 25 1 -0.3634 0.5755 0.8514 26 1 -0.3632 0.4495 -0.9242 27 1 -0.3634 -1.0250 0.0726 28 1 3.1024 -0.2440 -1.4309 29 1 1.4824 -0.3227 -2.1167 30 1 3.1799 -3.6858 -2.3917 31 1 2.7836 -2.2183 -3.3176 32 1 4.1272 -2.1982 -2.1503 33 1 0.0914 -2.5272 -0.7638 34 1 0.4259 -2.3744 -2.5053 35 1 0.8924 -3.8560 -1.6362 36 1 3.7403 -2.4391 0.1881 37 1 2.6027 -3.7970 0.0766 38 1 2.2928 -2.5600 2.1849 39 1 0.8459 -2.4072 1.1749 40 1 1.0243 0.8666 2.2538 41 1 2.4299 -1.1620 3.8652 42 1 3.0710 0.4576 3.4988 43 1 1.1109 1.4868 4.6147 44 1 0.4692 -0.1324 4.9815 45 1 2.5022 -0.6386 6.3072 46 1 3.1444 0.9805 5.9409 47 1 0.8097 2.1260 11.2278 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120799876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:32 Heat of formation + Delta-G solvation = -64.257010 kcal Electronic energy + Delta-G solvation = -20630.762481 eV Core-core repulsion = 17743.864704 eV Total energy + Delta-G solvation = -2886.897778 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.182 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76017 -37.54986 -35.01055 -34.60189 -32.99173 -31.59059 -28.40933 -27.91579 -27.41751 -26.91000 -24.92128 -23.34823 -22.31668 -20.98147 -19.56809 -18.73752 -17.02860 -16.90389 -16.55970 -16.47513 -15.90659 -15.66028 -15.30924 -15.02537 -14.86543 -14.35731 -14.17757 -13.81341 -13.58566 -13.53491 -13.23314 -13.03367 -12.95304 -12.89846 -12.79363 -12.59405 -12.48207 -12.40391 -12.18643 -11.98186 -11.86153 -11.70986 -11.64301 -11.35642 -11.15023 -11.05520 -10.85075 -10.71362 -10.32714 -9.33241 -8.67535 -8.38038 -6.14458 1.30673 1.38802 1.48130 1.73998 2.27702 2.95962 3.12923 3.34096 3.64517 3.74786 3.92983 4.00858 4.14299 4.17432 4.28562 4.33483 4.34624 4.38730 4.50442 4.53402 4.58642 4.70582 4.76761 4.80261 4.83099 4.88707 4.96366 4.97619 5.01571 5.05251 5.13837 5.15652 5.19989 5.20993 5.23391 5.29579 5.35782 5.36863 5.38797 5.50801 5.56828 5.65520 5.69735 6.14513 6.17362 6.50729 7.03931 8.71450 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.040042 B = 0.002475 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.095730 B =11309.025936 C =11666.569717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 H 0.057 0.943 4 C -0.094 4.094 5 C -0.057 4.057 6 C -0.144 4.144 7 C -0.142 4.142 8 C -0.103 4.103 9 C -0.102 4.102 10 C 0.098 3.902 11 H 0.033 0.967 12 N -0.686 5.686 13 C 0.077 3.923 14 C -0.082 4.082 15 C -0.087 4.087 16 S -0.198 6.198 17 C -0.539 4.539 18 H 0.072 0.928 19 C 0.014 3.986 20 N -0.907 5.907 21 Si 0.995 3.005 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.263 1.263 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.344 0.656 41 H 0.068 0.932 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -7.567 -26.777 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 H 0.076 0.924 4 C -0.131 4.131 5 C -0.057 4.057 6 C -0.201 4.201 7 C -0.199 4.199 8 C -0.141 4.141 9 C -0.140 4.140 10 C -0.011 4.011 11 H 0.051 0.949 12 N -0.318 5.318 13 C -0.054 4.054 14 C -0.121 4.121 15 C -0.236 4.236 16 S 0.031 5.969 17 C -0.687 4.687 18 H 0.090 0.910 19 C -0.191 4.191 20 N -0.544 5.544 21 Si 0.817 3.183 22 H -0.192 1.192 23 H -0.198 1.198 24 H -0.188 1.188 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.163 0.837 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.473 -7.630 -26.468 27.585 hybrid contribution 2.394 0.288 0.998 2.609 sum 3.867 -7.342 -25.470 26.788 Atomic orbital electron populations 1.21782 0.94190 1.02212 1.01341 1.20913 0.96792 0.98895 0.93530 0.92430 1.21222 1.01158 0.94177 0.96593 1.20352 0.96007 0.94520 0.94796 1.22260 0.98549 1.01266 0.98017 1.22006 0.96113 1.00310 1.01444 1.21451 0.99023 1.00116 0.93541 1.21330 1.00915 0.94189 0.97581 1.21361 0.94910 0.95405 0.89452 0.94889 1.60609 1.40739 1.27841 1.02630 1.21825 0.93815 1.00445 0.89290 1.21115 0.98136 1.01464 0.91408 1.23147 1.01189 1.02087 0.97220 1.84633 1.26794 1.81930 1.03583 1.23037 1.01933 1.47967 0.95722 0.91004 1.26094 0.98327 0.93868 1.00796 1.70159 1.22482 1.39745 1.21974 0.85003 0.77628 0.79107 0.76584 1.19214 1.19821 1.18758 0.92705 0.92401 0.92495 0.92538 0.91254 0.92488 0.92269 0.92944 0.92650 0.92316 0.92695 0.92500 0.91633 0.93679 0.91467 0.83675 0.91346 0.95192 0.91811 0.91598 0.92124 0.92122 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.57 71.93 0.62 -1.58 16 2 C -0.08 -1.31 2.15 -11.58 -0.02 -1.33 16 3 H 0.06 0.91 8.29 -1.24 -0.01 0.90 16 4 C -0.09 -1.26 4.12 29.73 0.12 -1.14 16 5 C -0.06 -0.75 0.71 -52.21 -0.04 -0.78 16 6 C -0.14 -1.63 8.08 72.46 0.59 -1.04 16 7 C -0.14 -1.81 8.02 72.02 0.58 -1.23 16 8 C -0.10 -1.60 4.52 30.30 0.14 -1.46 16 9 C -0.10 -1.94 5.13 30.39 0.16 -1.79 16 10 C 0.10 1.89 2.24 44.54 0.10 1.99 16 11 H 0.03 0.69 7.77 -2.18 -0.02 0.67 16 12 N -0.69 -15.48 5.55 -492.30 -2.73 -18.21 16 13 C 0.08 2.03 5.47 86.30 0.47 2.51 16 14 C -0.08 -2.70 5.48 30.59 0.17 -2.54 16 15 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 16 S -0.20 -10.78 21.44 -56.49 -1.21 -11.99 16 17 C -0.54 -31.70 9.50 67.96 0.65 -31.06 16 18 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 19 C 0.01 0.81 5.49 84.86 0.47 1.28 16 20 N -0.91 -55.47 13.22 21.65 0.29 -55.19 16 21 Si 1.00 44.44 29.55 68.60 2.03 46.47 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 25 H 0.05 0.97 6.74 -2.39 -0.02 0.95 16 26 H 0.06 0.79 8.06 -2.39 -0.02 0.77 16 27 H 0.06 0.96 4.98 -2.39 -0.01 0.95 16 28 H 0.06 0.75 7.94 -1.72 -0.01 0.74 16 29 H 0.07 0.84 7.87 -1.74 -0.01 0.83 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.60 8.08 -2.39 -0.02 0.58 16 33 H 0.05 0.80 4.76 -2.39 -0.01 0.79 16 34 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.90 8.11 -2.22 -0.02 0.88 16 37 H 0.06 0.96 8.13 -2.23 -0.02 0.95 16 38 H 0.04 0.97 7.43 -2.10 -0.02 0.95 16 39 H 0.07 1.36 6.21 -2.62 -0.02 1.35 16 40 H 0.34 7.31 7.34 -89.70 -0.66 6.65 16 41 H 0.07 1.84 7.38 -2.39 -0.02 1.83 16 42 H 0.03 0.77 8.04 -2.39 -0.02 0.75 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 46 H 0.06 2.45 8.14 -2.40 -0.02 2.43 16 47 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -64.73 364.55 3.04 -61.69 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.28 Total: 18.58 kcal Atomic # 6 Polarization: -45.74 SS G_CDS: 4.39 Total: -41.35 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -2.45 Total: -73.40 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -10.78 SS G_CDS: -1.21 Total: -11.99 kcal Total: -64.73 3.04 -61.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120799876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.568 kcal (2) G-P(sol) polarization free energy of solvation -64.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds