Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47465 * 2 1 4 4 C 1.53001 * 109.51710 * 303.93413 * 3 2 1 5 5 C 1.53000 * 109.47129 * 302.82877 * 4 3 2 6 6 C 1.53118 * 109.52491 * 64.05767 * 3 2 1 7 7 C 1.53029 * 109.31214 * 177.54423 * 6 3 2 8 8 N 1.46854 * 109.52298 * 300.88076 * 7 6 3 9 9 C 1.46897 * 110.99772 * 185.79989 * 8 7 6 10 10 C 1.53000 * 109.47161 * 65.74792 * 9 8 7 11 11 C 1.53004 * 109.47257 * 179.97438 * 10 9 8 12 12 S 1.81002 * 109.46879 * 180.02562 * 11 10 9 13 13 C 1.76199 * 99.99540 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00621 * 0.02562 * 13 12 11 15 15 C 1.38804 * 119.99872 * 179.97438 * 13 12 11 16 16 N 1.31628 * 119.99778 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00039 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46986 * 90.00636 * 17 15 13 19 19 H 1.48498 * 109.47091 * 210.00139 * 17 15 13 20 20 H 1.48495 * 109.47374 * 330.00333 * 17 15 13 21 21 C 1.46848 * 111.22980 * 61.68379 * 8 7 6 22 22 C 1.53040 * 109.52009 * 298.27620 * 21 8 7 23 23 H 1.08995 * 109.46978 * 302.99426 * 1 2 3 24 24 H 1.09005 * 109.46681 * 62.98940 * 1 2 3 25 25 H 1.08995 * 109.47442 * 182.98963 * 1 2 3 26 26 H 1.09001 * 109.47550 * 239.99700 * 2 1 3 27 27 H 1.09000 * 109.46997 * 119.99365 * 2 1 3 28 28 H 1.08993 * 109.47634 * 62.83467 * 4 3 2 29 29 H 1.09003 * 109.46857 * 182.83715 * 4 3 2 30 30 H 1.09004 * 109.47296 * 178.98994 * 5 4 3 31 31 H 1.08996 * 109.47122 * 298.98595 * 5 4 3 32 32 H 1.08997 * 109.46953 * 58.99160 * 5 4 3 33 33 H 1.08999 * 109.50496 * 297.50633 * 6 3 2 34 34 H 1.09002 * 109.50185 * 57.58011 * 6 3 2 35 35 H 1.09001 * 109.46985 * 60.85377 * 7 6 3 36 36 H 1.08998 * 109.46656 * 180.82419 * 7 6 3 37 37 H 1.09001 * 109.47126 * 185.74916 * 9 8 7 38 38 H 1.09005 * 109.47303 * 305.75149 * 9 8 7 39 39 H 1.09001 * 109.47201 * 300.00077 * 10 9 8 40 40 H 1.09005 * 109.46721 * 60.00000 * 10 9 8 41 41 H 1.09001 * 109.47124 * 300.00180 * 11 10 9 42 42 H 1.08989 * 109.46972 * 60.00082 * 11 10 9 43 43 H 0.97000 * 119.99945 * 179.97438 * 16 15 13 44 44 H 1.09003 * 109.45955 * 178.26544 * 21 8 7 45 45 H 1.08992 * 109.45881 * 58.28736 * 21 8 7 46 46 H 1.08998 * 109.50641 * 299.23646 * 22 21 8 47 47 H 1.09010 * 109.53214 * 179.14209 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4515 2.1928 -1.1965 5 6 1.8202 1.4613 -2.4887 6 6 1.6155 2.1354 1.2977 7 6 2.1799 3.5577 1.3201 8 7 3.6446 3.5060 1.2274 9 6 4.2295 4.8443 1.3841 10 6 3.9659 5.3532 2.8026 11 6 4.5757 6.7470 2.9661 12 16 4.2644 7.3486 4.6445 13 6 5.0515 8.9226 4.5561 14 1 5.5293 9.2367 3.6400 15 6 5.0565 9.7592 5.6636 16 7 4.4736 9.3766 6.7801 17 14 5.8915 11.4275 5.5702 18 1 4.9118 12.4466 5.1151 19 1 6.4053 11.7998 6.9128 20 1 7.0211 11.3626 4.6084 21 6 4.0761 2.8873 -0.0325 22 6 3.5683 1.4449 -0.0942 23 1 -0.3633 0.5596 0.8619 24 1 -0.3633 0.4668 -0.9156 25 1 -0.3634 -1.0262 0.0536 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 0.3667 2.2362 -1.1004 29 1 1.8546 3.2052 -1.2245 30 1 1.3859 1.9859 -3.3398 31 1 2.9047 1.4339 -2.5939 32 1 1.4327 0.4432 -2.4531 33 1 0.5275 2.1748 1.3501 34 1 2.0009 1.5775 2.1511 35 1 1.7828 4.1195 0.4746 36 1 1.8913 4.0484 2.2496 37 1 5.3043 4.7937 1.2101 38 1 3.7765 5.5255 0.6637 39 1 2.8910 5.4039 2.9766 40 1 4.4189 4.6721 3.5230 41 1 5.6505 6.6959 2.7922 42 1 4.1231 7.4282 2.2457 43 1 4.4774 9.9611 7.5542 44 1 5.1649 2.8915 -0.0849 45 1 3.6699 3.4515 -0.8719 46 1 3.9851 0.8764 0.7372 47 1 3.8756 0.9903 -1.0361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186546565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = -35.647404 kcal Electronic energy + Delta-G solvation = -20903.435183 eV Core-core repulsion = 18017.778011 eV Total energy + Delta-G solvation = -2885.657172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.182 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29450 -36.77584 -33.20123 -32.39888 -31.71088 -30.65464 -30.13438 -26.17577 -25.44990 -24.24192 -23.73164 -22.93477 -21.15367 -20.48404 -18.00443 -17.42652 -16.30412 -15.65203 -15.33985 -15.08867 -14.78232 -14.56283 -14.22728 -14.04684 -13.81002 -13.63436 -12.99880 -12.90439 -12.64537 -12.40118 -12.15500 -12.03293 -11.90322 -11.60462 -11.56900 -11.46582 -11.21674 -11.16762 -11.04588 -10.83372 -10.69478 -10.62129 -10.45196 -10.26335 -10.19538 -9.96740 -9.47230 -9.03314 -8.26399 -8.18193 -6.49261 -6.20166 -3.89917 3.23046 3.23963 3.30650 3.57643 3.98776 4.25442 4.43644 4.53984 4.57873 4.93332 4.99561 5.06634 5.13891 5.15556 5.17357 5.21130 5.28176 5.39968 5.41058 5.42438 5.46491 5.52757 5.55578 5.63293 5.68467 5.72473 5.74625 5.81829 5.83763 5.87625 5.93266 5.96317 5.99892 6.02387 6.04815 6.15151 6.20131 6.27344 6.37478 6.41297 6.65515 6.81171 7.19205 7.20699 7.63095 8.39323 9.26051 10.88064 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.040840 B = 0.002645 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.436650 B =10582.811545 C =10866.898438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.057 4.057 4 C -0.119 4.119 5 C -0.155 4.155 6 C -0.106 4.106 7 C 0.050 3.950 8 N -0.536 5.536 9 C 0.061 3.939 10 C -0.093 4.093 11 C -0.112 4.112 12 S -0.133 6.133 13 C -0.515 4.515 14 H 0.072 0.928 15 C 0.070 3.930 16 N -0.870 5.870 17 Si 0.918 3.082 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.055 3.945 22 C -0.106 4.106 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.032 0.968 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.267 0.733 44 H 0.070 0.930 45 H 0.032 0.968 46 H 0.070 0.930 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 -18.150 -16.745 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.057 4.057 4 C -0.156 4.156 5 C -0.212 4.212 6 C -0.144 4.144 7 C -0.078 4.078 8 N -0.260 5.260 9 C -0.068 4.068 10 C -0.132 4.132 11 C -0.261 4.261 12 S 0.095 5.905 13 C -0.664 4.664 14 H 0.090 0.910 15 C -0.138 4.138 16 N -0.506 5.506 17 Si 0.744 3.256 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.073 4.073 22 C -0.144 4.144 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.375 -18.879 -15.303 25.125 hybrid contribution 0.897 2.256 -1.702 2.965 sum -5.478 -16.624 -17.005 24.404 Atomic orbital electron populations 1.21879 0.96080 1.01255 1.02083 1.21584 0.95830 0.95858 1.01770 1.20613 0.95115 0.94960 0.95027 1.21698 1.00615 0.99237 0.94066 1.21877 1.01543 1.00608 0.97151 1.21688 0.99848 0.95575 0.97246 1.22185 0.87442 0.96811 1.01329 1.61905 1.08580 1.21346 1.34211 1.22159 0.99440 0.87793 0.97436 1.21282 1.01200 0.95274 0.95428 1.23233 1.02053 0.97915 1.02937 1.84626 1.75130 1.21127 1.09588 1.22694 1.40835 1.01623 1.01217 0.91021 1.25016 0.95428 0.98785 0.94613 1.70026 1.41632 1.36877 1.02027 0.86171 0.79454 0.82313 0.77617 1.20310 1.20756 1.19707 1.22087 0.99921 0.94992 0.90322 1.21664 0.94578 0.96291 1.01821 0.92365 0.92566 0.93208 0.91970 0.92060 0.91872 0.91943 0.93254 0.92593 0.92450 0.91543 0.91065 0.94994 0.90094 0.90985 0.95216 0.91717 0.90812 0.92188 0.92449 0.92341 0.91112 0.94963 0.91172 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.14 37.16 0.34 -0.75 16 2 C -0.11 -0.85 4.45 -26.73 -0.12 -0.97 16 3 C -0.06 -0.48 0.32 -154.39 -0.05 -0.53 16 4 C -0.12 -0.98 3.86 -26.73 -0.10 -1.08 16 5 C -0.15 -1.11 9.17 37.16 0.34 -0.77 16 6 C -0.11 -1.04 4.55 -26.66 -0.12 -1.16 16 7 C 0.05 0.59 5.04 -3.83 -0.02 0.57 16 8 N -0.54 -6.74 4.66 -234.67 -1.09 -7.83 16 9 C 0.06 0.85 4.96 -3.83 -0.02 0.84 16 10 C -0.09 -1.58 5.15 -26.73 -0.14 -1.72 16 11 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 12 S -0.13 -3.55 21.44 -107.50 -2.30 -5.85 16 13 C -0.52 -15.02 9.50 30.94 0.29 -14.72 16 14 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 15 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 16 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 17 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.05 0.58 5.21 -3.83 -0.02 0.56 16 22 C -0.11 -0.96 4.65 -26.65 -0.12 -1.08 16 23 H 0.06 0.43 6.45 -51.93 -0.34 0.09 16 24 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.44 6.59 -51.93 -0.34 0.10 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 6.60 -51.93 -0.34 0.17 16 29 H 0.06 0.59 4.94 -51.93 -0.26 0.34 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.40 6.51 -51.93 -0.34 0.06 16 32 H 0.06 0.38 6.26 -51.93 -0.32 0.06 16 33 H 0.07 0.60 6.60 -51.93 -0.34 0.26 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.38 6.58 -51.93 -0.34 0.03 16 36 H 0.08 1.05 6.21 -51.93 -0.32 0.72 16 37 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 38 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 39 H 0.06 1.11 6.43 -51.93 -0.33 0.77 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 42 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 44 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 45 H 0.03 0.34 6.45 -51.93 -0.34 0.01 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.52 6.43 -51.92 -0.33 0.19 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -30.40 355.24 -10.42 -40.82 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.46 Total: -2.66 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 0.38 Total: -21.00 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: -0.36 Total: -33.42 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.40 -10.42 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186546565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.173 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds