Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47119 * 2 1 4 4 C 1.53006 * 109.46581 * 119.99705 * 2 1 3 5 5 C 1.53001 * 109.47094 * 65.00278 * 4 2 1 6 6 N 1.46900 * 109.47173 * 178.08756 * 5 4 2 7 7 C 1.46897 * 110.99890 * 287.87016 * 6 5 4 8 8 C 1.50700 * 109.47137 * 298.24931 * 7 6 5 9 9 H 1.07992 * 119.99964 * 4.81452 * 8 7 6 10 10 C 1.37877 * 119.99597 * 184.81253 * 8 7 6 11 11 N 1.31509 * 120.00258 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99881 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46922 * 120.00106 * 12 10 8 15 15 H 1.48489 * 109.47256 * 240.00368 * 12 10 8 16 16 C 1.46898 * 110.99858 * 163.91604 * 6 5 4 17 17 C 1.53003 * 109.47119 * 189.99844 * 16 6 5 18 18 C 1.52585 * 109.22266 * 63.76418 * 17 16 6 19 19 C 1.53097 * 109.95393 * 190.99778 * 18 17 16 20 20 S 1.81749 * 108.83891 * 296.97739 * 19 18 17 21 21 C 1.81743 * 102.22472 * 53.26767 * 20 19 18 22 22 C 1.52580 * 109.22541 * 185.00225 * 17 16 6 23 23 H 1.09002 * 109.46717 * 59.99774 * 1 2 3 24 24 H 1.08993 * 109.47304 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47038 * 300.00206 * 1 2 3 26 26 H 1.09000 * 109.47038 * 239.99793 * 2 1 3 27 27 H 1.09006 * 109.47036 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47645 * 299.99454 * 3 2 1 29 29 H 1.09000 * 109.47334 * 59.99975 * 3 2 1 30 30 H 1.08997 * 109.47035 * 304.99967 * 4 2 1 31 31 H 1.08994 * 109.46776 * 184.99554 * 4 2 1 32 32 H 1.09003 * 109.47326 * 58.08075 * 5 4 2 33 33 H 1.09003 * 109.46819 * 298.08603 * 5 4 2 34 34 H 1.09005 * 109.46923 * 58.25000 * 7 6 5 35 35 H 1.08996 * 109.46895 * 178.24632 * 7 6 5 36 36 H 0.97007 * 120.00144 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.46981 * 70.00295 * 16 6 5 38 38 H 1.08999 * 109.47561 * 310.00194 * 16 6 5 39 39 H 1.08999 * 109.18869 * 304.38597 * 17 16 6 40 40 H 1.08994 * 109.39175 * 311.14736 * 18 17 16 41 41 H 1.08996 * 109.39044 * 70.85224 * 18 17 16 42 42 H 1.08997 * 109.57562 * 177.16736 * 19 18 17 43 43 H 1.08998 * 109.57552 * 56.78398 * 19 18 17 44 44 H 1.08999 * 109.57830 * 186.92833 * 21 20 19 45 45 H 1.09001 * 109.57768 * 66.53675 * 21 20 19 46 46 H 1.08997 * 109.38999 * 289.15174 * 22 17 16 47 47 H 1.08995 * 109.39179 * 48.95733 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1955 1.1881 6 7 2.1639 -2.8978 2.3651 7 6 3.6202 -3.0639 2.2687 8 6 3.9514 -3.9021 1.0609 9 1 3.1669 -4.2089 0.3851 10 6 5.2559 -4.2772 0.8188 11 7 6.2110 -3.9040 1.6422 12 14 5.6663 -5.3169 -0.6779 13 1 4.4232 -5.6018 -1.4387 14 1 6.6194 -4.5800 -1.5461 15 1 6.2826 -6.5946 -0.2392 16 6 1.4970 -4.1938 2.5483 17 6 1.8871 -4.7805 3.9064 18 6 1.3712 -3.8676 5.0149 19 6 1.9779 -4.2823 6.3580 20 16 1.4264 -5.9678 6.7556 21 6 1.8894 -6.8876 5.2580 22 6 1.2927 -6.1796 4.0387 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6769 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1262 -0.6444 1.2953 32 1 2.0416 -2.6465 0.2828 33 1 0.5480 -2.2735 1.1764 34 1 4.0919 -2.0860 2.1727 35 1 3.9896 -3.5589 3.1669 36 1 7.1289 -4.1676 1.4716 37 1 1.8050 -4.8760 1.7559 38 1 0.4166 -4.0553 2.5090 39 1 2.9733 -4.8444 3.9705 40 1 1.6504 -2.8373 4.7944 41 1 0.2852 -3.9429 5.0697 42 1 1.6451 -3.5959 7.1365 43 1 3.0655 -4.2604 6.2898 44 1 1.4988 -7.9034 5.3179 45 1 2.9754 -6.9165 5.1683 46 1 0.2119 -6.1039 4.1572 47 1 1.5190 -6.7552 3.1412 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602465593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = -36.498823 kcal Electronic energy + Delta-G solvation = -21805.245438 eV Core-core repulsion = 18919.551346 eV Total energy + Delta-G solvation = -2885.694092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.182 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.26463 -36.58161 -34.81017 -32.41029 -31.21145 -29.40073 -27.90236 -26.91712 -26.06743 -23.54324 -22.77500 -22.70576 -20.27959 -19.42961 -19.17862 -16.63412 -16.38978 -15.28820 -14.89329 -14.56623 -14.37345 -14.20496 -13.91206 -13.63657 -13.38032 -13.28345 -13.05516 -12.52259 -12.48356 -12.33910 -12.04992 -11.87888 -11.61813 -11.25561 -11.12748 -11.05556 -11.02530 -10.79383 -10.75134 -10.39493 -10.29904 -10.12044 -10.02876 -9.99247 -9.85562 -9.71922 -9.45922 -9.35973 -8.44205 -7.49226 -7.15042 -6.05592 -4.13785 2.02944 2.75699 3.22129 3.31194 3.33499 4.37008 4.75325 5.04925 5.10725 5.17954 5.23861 5.24418 5.28861 5.31598 5.42500 5.57161 5.62669 5.76482 5.80144 5.87158 5.94617 5.96666 6.00970 6.02528 6.11848 6.16451 6.20684 6.25146 6.28411 6.32471 6.35570 6.42025 6.56581 6.60040 6.71024 6.77710 6.90246 6.90954 6.97368 7.27771 7.53170 7.88476 8.07534 8.27415 8.32299 8.96793 9.52447 10.98902 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.006034 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.792082 B = 4638.986401 C = 6543.752569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.103 4.103 5 C 0.060 3.940 6 N -0.541 5.541 7 C 0.185 3.815 8 C -0.544 4.544 9 H 0.056 0.944 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.883 3.117 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.072 3.928 17 C -0.090 4.090 18 C -0.105 4.105 19 C -0.073 4.073 20 S -0.296 6.296 21 C -0.072 4.072 22 C -0.114 4.114 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.261 0.739 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 2.050 3.119 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.141 4.141 5 C -0.068 4.068 6 N -0.265 5.265 7 C 0.059 3.941 8 C -0.583 4.583 9 H 0.074 0.926 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.711 3.289 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.057 4.057 17 C -0.109 4.109 18 C -0.144 4.144 19 C -0.221 4.221 20 S -0.071 6.071 21 C -0.220 4.220 22 C -0.153 4.153 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.639 1.952 4.513 11.720 hybrid contribution 1.279 -0.766 -2.672 3.060 sum -9.359 1.186 1.841 9.612 Atomic orbital electron populations 1.21862 0.95933 1.01550 1.00824 1.21104 0.95261 0.95866 0.99397 1.21811 1.01122 0.96309 1.00891 1.21527 1.01563 0.94945 0.96050 1.21967 0.97253 0.93858 0.93716 1.62473 1.07865 1.18346 1.37774 1.19783 0.81627 0.96474 0.96193 1.21734 0.93046 1.33208 1.10279 0.92625 1.24923 0.96528 0.95967 0.96239 1.69943 1.00529 1.45741 1.36631 0.86680 0.78430 0.80377 0.83395 1.19929 1.20977 1.21013 1.21845 0.96457 0.91885 0.95482 1.21094 1.01743 0.92717 0.95300 1.21648 0.99720 1.01603 0.91458 1.23489 1.03579 0.93493 1.01536 1.86546 1.82593 1.09681 1.28245 1.23401 1.03938 1.00471 0.94238 1.21720 1.00353 0.96555 0.96712 0.93588 0.92600 0.93026 0.91463 0.92693 0.93414 0.93034 0.92488 0.91397 0.93783 0.93350 0.95426 0.94789 0.92943 0.93871 0.93360 0.89878 0.89054 0.91942 0.88519 0.89852 0.88490 0.89784 0.91317 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.95 37.16 0.33 -1.45 16 2 C -0.10 -1.38 2.92 -90.62 -0.26 -1.64 16 3 C -0.14 -1.82 9.19 37.15 0.34 -1.48 16 4 C -0.10 -1.72 4.77 -26.73 -0.13 -1.85 16 5 C 0.06 1.10 4.52 -3.82 -0.02 1.08 16 6 N -0.54 -10.64 3.87 -236.07 -0.91 -11.55 16 7 C 0.18 4.43 4.77 -4.98 -0.02 4.41 16 8 C -0.54 -14.18 7.33 -34.44 -0.25 -14.44 16 9 H 0.06 1.46 5.95 -52.49 -0.31 1.15 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 12 Si 0.88 20.99 29.54 -169.99 -5.02 15.97 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 C 0.07 1.30 4.12 -3.82 -0.02 1.28 16 17 C -0.09 -1.48 1.85 -91.05 -0.17 -1.65 16 18 C -0.11 -1.57 5.03 -26.89 -0.14 -1.70 16 19 C -0.07 -1.02 6.46 37.21 0.24 -0.78 16 20 S -0.30 -4.24 22.33 -107.50 -2.40 -6.65 16 21 C -0.07 -0.99 6.46 37.21 0.24 -0.75 16 22 C -0.11 -1.63 5.05 -26.89 -0.14 -1.77 16 23 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.70 6.61 -51.93 -0.34 0.36 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.31 6.67 -51.93 -0.35 0.96 16 32 H 0.04 0.91 6.20 -51.93 -0.32 0.59 16 33 H 0.05 0.80 6.32 -51.93 -0.33 0.47 16 34 H 0.03 0.72 6.61 -51.93 -0.34 0.38 16 35 H 0.03 0.88 6.28 -51.93 -0.33 0.56 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.04 0.88 6.48 -51.93 -0.34 0.54 16 38 H 0.05 0.79 7.86 -51.93 -0.41 0.38 16 39 H 0.08 1.65 6.23 -51.93 -0.32 1.32 16 40 H 0.09 1.47 7.39 -51.93 -0.38 1.09 16 41 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 42 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 47 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -26.85 361.86 -11.04 -37.90 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.81 Total: 2.54 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -0.08 Total: -19.03 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.18 Total: -36.18 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -2.40 Total: -6.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -26.85 -11.04 -37.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602465593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.398 kcal (2) G-P(sol) polarization free energy of solvation -26.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds