Wall clock time and date at job start Tue Mar 31 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47119 * 2 1 4 4 C 1.53006 * 109.46581 * 119.99705 * 2 1 3 5 5 C 1.53001 * 109.47094 * 65.00278 * 4 2 1 6 6 N 1.46900 * 109.47173 * 178.08756 * 5 4 2 7 7 C 1.46897 * 110.99890 * 287.87016 * 6 5 4 8 8 C 1.50700 * 109.47137 * 298.24931 * 7 6 5 9 9 H 1.07992 * 119.99964 * 4.81452 * 8 7 6 10 10 C 1.37877 * 119.99597 * 184.81253 * 8 7 6 11 11 N 1.31509 * 120.00258 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99881 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46922 * 120.00106 * 12 10 8 15 15 H 1.48489 * 109.47256 * 240.00368 * 12 10 8 16 16 C 1.46898 * 110.99858 * 163.91604 * 6 5 4 17 17 C 1.53003 * 109.47119 * 189.99844 * 16 6 5 18 18 C 1.52585 * 109.22266 * 63.76418 * 17 16 6 19 19 C 1.53097 * 109.95393 * 190.99778 * 18 17 16 20 20 S 1.81749 * 108.83891 * 296.97739 * 19 18 17 21 21 C 1.81743 * 102.22472 * 53.26767 * 20 19 18 22 22 C 1.52580 * 109.22541 * 185.00225 * 17 16 6 23 23 H 1.09002 * 109.46717 * 59.99774 * 1 2 3 24 24 H 1.08993 * 109.47304 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47038 * 300.00206 * 1 2 3 26 26 H 1.09000 * 109.47038 * 239.99793 * 2 1 3 27 27 H 1.09006 * 109.47036 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47645 * 299.99454 * 3 2 1 29 29 H 1.09000 * 109.47334 * 59.99975 * 3 2 1 30 30 H 1.08997 * 109.47035 * 304.99967 * 4 2 1 31 31 H 1.08994 * 109.46776 * 184.99554 * 4 2 1 32 32 H 1.09003 * 109.47326 * 58.08075 * 5 4 2 33 33 H 1.09003 * 109.46819 * 298.08603 * 5 4 2 34 34 H 1.09005 * 109.46923 * 58.25000 * 7 6 5 35 35 H 1.08996 * 109.46895 * 178.24632 * 7 6 5 36 36 H 0.97007 * 120.00144 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.46981 * 70.00295 * 16 6 5 38 38 H 1.08999 * 109.47561 * 310.00194 * 16 6 5 39 39 H 1.08999 * 109.18869 * 304.38597 * 17 16 6 40 40 H 1.08994 * 109.39175 * 311.14736 * 18 17 16 41 41 H 1.08996 * 109.39044 * 70.85224 * 18 17 16 42 42 H 1.08997 * 109.57562 * 177.16736 * 19 18 17 43 43 H 1.08998 * 109.57552 * 56.78398 * 19 18 17 44 44 H 1.08999 * 109.57830 * 186.92833 * 21 20 19 45 45 H 1.09001 * 109.57768 * 66.53675 * 21 20 19 46 46 H 1.08997 * 109.38999 * 289.15174 * 22 17 16 47 47 H 1.08995 * 109.39179 * 48.95733 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1955 1.1881 6 7 2.1639 -2.8978 2.3651 7 6 3.6202 -3.0639 2.2687 8 6 3.9514 -3.9021 1.0609 9 1 3.1669 -4.2089 0.3851 10 6 5.2559 -4.2772 0.8188 11 7 6.2110 -3.9040 1.6422 12 14 5.6663 -5.3169 -0.6779 13 1 4.4232 -5.6018 -1.4387 14 1 6.6194 -4.5800 -1.5461 15 1 6.2826 -6.5946 -0.2392 16 6 1.4970 -4.1938 2.5483 17 6 1.8871 -4.7805 3.9064 18 6 1.3712 -3.8676 5.0149 19 6 1.9779 -4.2823 6.3580 20 16 1.4264 -5.9678 6.7556 21 6 1.8894 -6.8876 5.2580 22 6 1.2927 -6.1796 4.0387 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6769 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1262 -0.6444 1.2953 32 1 2.0416 -2.6465 0.2828 33 1 0.5480 -2.2735 1.1764 34 1 4.0919 -2.0860 2.1727 35 1 3.9896 -3.5589 3.1669 36 1 7.1289 -4.1676 1.4716 37 1 1.8050 -4.8760 1.7559 38 1 0.4166 -4.0553 2.5090 39 1 2.9733 -4.8444 3.9705 40 1 1.6504 -2.8373 4.7944 41 1 0.2852 -3.9429 5.0697 42 1 1.6451 -3.5959 7.1365 43 1 3.0655 -4.2604 6.2898 44 1 1.4988 -7.9034 5.3179 45 1 2.9754 -6.9165 5.1683 46 1 0.2119 -6.1039 4.1572 47 1 1.5190 -6.7552 3.1412 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602465593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:36 Heat of formation + Delta-G solvation = -48.787195 kcal Electronic energy + Delta-G solvation = -21805.778302 eV Core-core repulsion = 18919.551346 eV Total energy + Delta-G solvation = -2886.226956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.182 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.76811 -37.84129 -36.25196 -34.42366 -32.38020 -30.72874 -29.65173 -27.94314 -27.65288 -25.39439 -24.10374 -23.92341 -21.68700 -20.78961 -20.65057 -18.43242 -17.82012 -16.91994 -16.50618 -16.00106 -15.78477 -15.53199 -15.29604 -14.87594 -14.65285 -14.55945 -14.31518 -14.30195 -13.69125 -13.61075 -13.32312 -13.15351 -13.05707 -12.86500 -12.65756 -12.61412 -12.35732 -12.25765 -12.13370 -11.97154 -11.88825 -11.74269 -11.44085 -11.38511 -11.24644 -11.13570 -11.08396 -10.57450 -10.54799 -8.92672 -8.64786 -8.12867 -6.30948 0.89634 1.31449 1.34243 1.43894 1.60797 2.35490 3.11168 3.31450 3.75737 3.90388 4.00038 4.08091 4.11676 4.14786 4.21382 4.36282 4.42283 4.47371 4.55025 4.67281 4.73543 4.79797 4.83114 4.84466 4.89235 4.95265 4.97208 5.00845 5.04801 5.08393 5.11935 5.21282 5.25458 5.29270 5.34733 5.38863 5.44572 5.48430 5.54992 5.57703 5.61568 5.81290 6.11516 6.32834 6.65152 6.91676 7.39208 8.87935 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.006034 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.792082 B = 4638.986401 C = 6543.752569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.095 4.095 5 C 0.063 3.937 6 N -0.535 5.535 7 C 0.206 3.794 8 C -0.544 4.544 9 H 0.053 0.947 10 C 0.014 3.986 11 N -0.924 5.924 12 Si 0.945 3.055 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.280 1.280 16 C 0.074 3.926 17 C -0.084 4.084 18 C -0.096 4.096 19 C -0.071 4.071 20 S -0.294 6.294 21 C -0.071 4.071 22 C -0.107 4.107 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.016 0.984 33 H 0.075 0.925 34 H -0.001 1.001 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.018 0.982 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.067 0.933 44 H 0.120 0.880 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 1.917 2.836 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.199 4.199 4 C -0.133 4.133 5 C -0.065 4.065 6 N -0.258 5.258 7 C 0.079 3.921 8 C -0.583 4.583 9 H 0.071 0.929 10 C -0.185 4.185 11 N -0.565 5.565 12 Si 0.771 3.229 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.206 1.206 16 C -0.054 4.054 17 C -0.103 4.103 18 C -0.134 4.134 19 C -0.219 4.219 20 S -0.069 6.069 21 C -0.219 4.219 22 C -0.147 4.147 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.017 0.983 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.138 0.862 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.995 1.819 4.227 13.785 hybrid contribution 1.986 -0.705 -2.562 3.317 sum -11.009 1.114 1.665 11.190 Atomic orbital electron populations 1.21809 0.93823 1.01783 1.02180 1.21080 0.96981 0.96298 0.97129 1.21785 1.00299 0.95446 1.02323 1.21451 0.99374 0.94460 0.98035 1.22026 0.98510 0.94300 0.91682 1.62444 1.05440 1.19462 1.38430 1.19347 0.84265 0.94108 0.94395 1.21964 0.92992 1.32802 1.10551 0.92907 1.25691 0.96588 0.97284 0.98942 1.70062 1.00852 1.47152 1.38403 0.85696 0.78267 0.78789 0.80105 1.19235 1.20681 1.20571 1.21910 0.97631 0.90368 0.95537 1.21005 0.99391 0.94697 0.95222 1.21531 1.00515 1.00228 0.91171 1.23457 1.02595 0.94165 1.01697 1.86538 1.82223 1.09546 1.28594 1.23412 1.03152 1.01598 0.93712 1.21660 1.01181 0.94868 0.96961 0.91854 0.92902 0.92076 0.92886 0.94058 0.91500 0.92056 0.91598 0.94937 0.96553 0.90635 0.98263 0.97243 0.92900 0.96346 0.90626 0.93955 0.90464 0.90274 0.86550 0.91469 0.86206 0.91233 0.89491 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.95 71.98 0.64 -2.41 16 2 C -0.10 -2.62 2.92 -10.79 -0.03 -2.66 16 3 C -0.14 -3.39 9.19 71.98 0.66 -2.73 16 4 C -0.10 -3.21 4.77 30.60 0.15 -3.06 16 5 C 0.06 2.29 4.52 86.30 0.39 2.68 16 6 N -0.54 -21.42 3.87 -900.78 -3.49 -24.91 16 7 C 0.21 10.37 4.77 85.56 0.41 10.77 16 8 C -0.54 -29.35 7.33 25.60 0.19 -29.17 16 9 H 0.05 2.84 5.95 -2.91 -0.02 2.82 16 10 C 0.01 0.78 5.46 84.66 0.46 1.25 16 11 N -0.92 -54.50 13.29 21.45 0.28 -54.22 16 12 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 C 0.07 2.65 4.12 86.30 0.36 3.00 16 17 C -0.08 -2.78 1.85 -11.07 -0.02 -2.80 16 18 C -0.10 -2.76 5.03 30.49 0.15 -2.60 16 19 C -0.07 -1.94 6.46 72.01 0.46 -1.48 16 20 S -0.29 -7.97 22.33 -56.49 -1.26 -9.23 16 21 C -0.07 -1.85 6.46 72.02 0.46 -1.39 16 22 C -0.11 -2.94 5.05 30.49 0.15 -2.79 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.05 1.19 6.61 -2.39 -0.02 1.17 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.03 1.31 6.67 -2.39 -0.02 1.29 16 32 H 0.02 0.69 6.20 -2.39 -0.01 0.67 16 33 H 0.08 2.36 6.32 -2.39 -0.02 2.34 16 34 H 0.00 -0.04 6.61 -2.38 -0.02 -0.05 16 35 H 0.01 0.53 6.28 -2.39 -0.02 0.51 16 36 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 37 H 0.02 0.75 6.48 -2.38 -0.02 0.74 16 38 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16 39 H 0.04 1.76 6.23 -2.39 -0.01 1.74 16 40 H 0.08 2.46 7.39 -2.39 -0.02 2.44 16 41 H 0.08 2.04 8.06 -2.39 -0.02 2.02 16 42 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.09 2.10 8.06 -2.39 -0.02 2.08 16 47 H 0.07 1.97 8.05 -2.39 -0.02 1.95 16 Total: -1.00 -59.31 361.86 2.91 -56.40 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.90 Total: 19.53 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 4.44 Total: -33.37 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -3.20 Total: -79.13 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.26 Total: -9.23 kcal Total: -59.31 2.91 -56.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602465593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.617 kcal (2) G-P(sol) polarization free energy of solvation -59.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds