Wall clock time and date at job start Tue Mar 31 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47063 * 2 1 4 4 C 1.38262 * 120.06520 * 270.02027 * 3 2 1 5 5 C 1.38029 * 119.83216 * 180.02562 * 4 3 2 6 6 C 1.38685 * 120.34807 * 359.97438 * 5 4 3 7 7 C 1.37835 * 119.84637 * 359.84688 * 6 5 4 8 8 C 1.38010 * 120.06670 * 89.99392 * 3 2 1 9 9 C 1.50622 * 121.85164 * 180.48297 * 7 6 5 10 10 N 1.46634 * 110.47759 * 342.34808 * 9 7 6 11 11 C 1.46902 * 111.00126 * 289.17328 * 10 9 7 12 12 C 1.53002 * 109.47186 * 293.31553 * 11 10 9 13 13 C 1.50693 * 115.54770 * 305.67077 * 12 11 10 14 14 H 1.08006 * 120.00174 * 144.65846 * 13 12 11 15 15 C 1.37877 * 120.00290 * 324.64740 * 13 12 11 16 16 N 1.31511 * 120.00068 * 162.97564 * 15 13 12 17 17 Si 1.86797 * 119.99871 * 342.98143 * 15 13 12 18 18 H 1.48503 * 109.47075 * 95.38031 * 17 15 13 19 19 H 1.48502 * 109.47201 * 215.37959 * 17 15 13 20 20 H 1.48501 * 109.47093 * 335.38070 * 17 15 13 21 21 C 1.52998 * 117.49781 * 159.99263 * 12 11 10 22 22 C 1.53003 * 117.49666 * 91.33901 * 12 11 10 23 23 C 1.46936 * 110.20198 * 52.57043 * 10 9 7 24 24 C 1.50707 * 118.49202 * 179.79758 * 6 5 4 25 25 H 1.09004 * 109.46620 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47332 * 300.00267 * 1 2 3 27 27 H 1.09003 * 109.46879 * 60.00250 * 1 2 3 28 28 H 1.08997 * 109.47332 * 239.99733 * 2 1 3 29 29 H 1.09004 * 109.46898 * 119.99194 * 2 1 3 30 30 H 1.08003 * 120.08283 * 0.04264 * 4 3 2 31 31 H 1.08001 * 119.82844 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.81655 * 0.02562 * 8 3 2 33 33 H 1.08999 * 109.30316 * 102.65607 * 9 7 6 34 34 H 1.09001 * 109.30443 * 222.24497 * 9 7 6 35 35 H 1.09005 * 109.46948 * 53.31862 * 11 10 9 36 36 H 1.08995 * 109.47375 * 173.31396 * 11 10 9 37 37 H 0.97004 * 119.99983 * 185.01436 * 16 15 13 38 38 H 1.08998 * 117.49910 * 0.02562 * 21 12 11 39 39 H 1.09002 * 117.49438 * 145.01584 * 21 12 11 40 40 H 1.08998 * 117.49552 * 214.98308 * 22 12 11 41 41 H 1.09004 * 117.49850 * 359.97438 * 22 12 11 42 42 H 1.09000 * 109.50731 * 168.99953 * 23 10 9 43 43 H 1.09002 * 109.63528 * 48.49193 * 23 10 9 44 44 H 1.09003 * 109.38824 * 283.30093 * 24 6 5 45 45 H 1.08996 * 109.39147 * 43.10276 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0741 -1.1966 5 6 2.7234 3.3752 -1.1910 6 6 2.9558 4.0311 0.0087 7 6 2.7227 3.3817 1.2019 8 6 2.2627 2.0728 1.1944 9 6 2.9493 4.0543 2.5304 10 7 3.8029 5.2355 2.3684 11 6 5.1856 4.8475 2.0593 12 6 5.7979 4.1361 3.2676 13 6 5.7376 4.8951 4.5680 14 1 5.5898 4.3642 5.4969 15 6 5.8713 6.2674 4.5722 16 7 5.4936 6.9617 5.6233 17 14 6.5887 7.1404 3.0847 18 1 5.4864 7.6133 2.2091 19 1 7.3966 8.3023 3.5347 20 1 7.4532 6.1996 2.3279 21 6 7.0224 3.2525 3.0213 22 6 5.6668 2.6130 3.3318 23 6 3.2576 6.1165 1.3265 24 6 3.4629 5.4497 -0.0340 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.0827 1.5676 -2.1333 31 1 2.9038 3.8853 -2.1257 32 1 2.0824 1.5618 2.1286 33 1 1.9898 4.3578 2.9490 34 1 3.4338 3.3540 3.2108 35 1 5.1912 4.1759 1.2008 36 1 5.7698 5.7381 1.8276 37 1 5.5194 7.9311 5.5991 38 1 7.3920 3.1783 1.9986 39 1 7.7843 3.2200 3.8001 40 1 5.5373 2.1601 4.3147 41 1 5.1440 2.1180 2.5134 42 1 3.7803 7.0728 1.3481 43 1 2.1931 6.2739 1.5002 44 1 4.5250 5.4471 -0.2791 45 1 2.9171 6.0063 -0.7958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198851502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:31 Heat of formation + Delta-G solvation = 42.176879 kcal Electronic energy + Delta-G solvation = -23549.024168 eV Core-core repulsion = 20531.297759 eV Total energy + Delta-G solvation = -3017.726409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58000 -39.29478 -37.51233 -34.76910 -34.18575 -33.21680 -31.50714 -29.47169 -28.81159 -27.16634 -25.36108 -24.30714 -23.40973 -22.89582 -22.41009 -21.07688 -19.94187 -18.09451 -17.43468 -17.18551 -16.55291 -16.23259 -16.09150 -15.51060 -15.37930 -15.16960 -14.84671 -14.53777 -14.46769 -14.36080 -13.87303 -13.74858 -13.40737 -13.31963 -13.12783 -12.77695 -12.61116 -12.40001 -12.21979 -12.19142 -12.06426 -12.00131 -11.74102 -11.56266 -11.51885 -11.27539 -10.99924 -10.41622 -10.23069 -9.60390 -9.29275 -8.98300 -8.17556 -6.09618 0.43557 0.49135 1.33995 1.42707 1.50194 2.44820 2.79917 2.87983 3.18898 3.55323 3.74947 3.84377 3.93192 4.02767 4.08640 4.14653 4.20060 4.26580 4.32916 4.47185 4.49342 4.50439 4.56969 4.60254 4.66052 4.75475 4.77524 4.85779 4.88009 4.92505 4.95115 5.02471 5.05794 5.07845 5.12116 5.21936 5.25424 5.29890 5.40165 5.49320 5.53563 5.73838 5.75334 5.83561 6.15455 6.29494 6.33198 6.45713 6.84366 7.50586 8.97810 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.005614 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.694214 B = 4985.936126 C = 5435.296655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.098 4.098 7 C -0.110 4.110 8 C -0.123 4.123 9 C 0.096 3.904 10 N -0.520 5.520 11 C 0.096 3.904 12 C -0.004 4.004 13 C -0.472 4.472 14 H 0.026 0.974 15 C 0.052 3.948 16 N -0.940 5.940 17 Si 0.938 3.062 18 H -0.254 1.254 19 H -0.314 1.314 20 H -0.258 1.258 21 C -0.205 4.205 22 C -0.171 4.171 23 C 0.042 3.958 24 C -0.111 4.111 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.263 0.737 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 -10.088 -17.379 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.098 4.098 7 C -0.112 4.112 8 C -0.142 4.142 9 C -0.032 4.032 10 N -0.241 5.241 11 C -0.031 4.031 12 C -0.005 4.005 13 C -0.509 4.509 14 H 0.044 0.956 15 C -0.147 4.147 16 N -0.579 5.579 17 Si 0.768 3.232 18 H -0.180 1.180 19 H -0.243 1.243 20 H -0.184 1.184 21 C -0.244 4.244 22 C -0.208 4.208 23 C -0.086 4.086 24 C -0.150 4.150 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.630 -9.635 -16.790 21.195 hybrid contribution 0.509 0.360 -0.522 0.814 sum -8.121 -9.276 -17.313 21.254 Atomic orbital electron populations 1.21718 0.94107 1.02388 1.01783 1.20566 0.96619 0.91291 1.03453 1.20086 0.98662 0.97201 0.92713 1.21200 1.00138 0.94674 0.98223 1.21268 0.99677 0.95411 0.97282 1.19667 1.00842 0.96264 0.93057 1.20481 0.99539 0.95267 0.95873 1.21070 1.00669 0.93924 0.98532 1.21058 0.97187 0.91607 0.93356 1.62288 1.01365 1.16479 1.43931 1.21698 0.89144 0.97437 0.94832 1.19263 0.97330 0.89645 0.94286 1.20167 1.48630 0.91527 0.90600 0.95621 1.25403 0.93814 0.97803 0.97659 1.70046 1.48226 1.06760 1.32846 0.86122 0.79048 0.77090 0.80915 1.17958 1.24292 1.18353 1.23158 0.91932 1.08648 1.00625 1.22754 1.00401 0.96717 1.00920 1.22342 1.00842 0.96435 0.88940 1.21075 1.01384 0.93025 0.99469 0.90991 0.93495 0.92555 0.89804 0.91001 0.83959 0.84445 0.86030 0.90414 0.89882 0.94487 0.93186 0.92839 0.89544 0.90464 0.90793 0.89257 0.91343 0.89926 0.91277 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.89 71.98 0.71 -1.43 16 2 C -0.08 -1.39 6.07 29.85 0.18 -1.21 16 3 C -0.09 -1.96 5.13 -19.91 -0.10 -2.06 16 4 C -0.12 -2.64 9.71 22.23 0.22 -2.43 16 5 C -0.12 -2.77 9.66 22.33 0.22 -2.55 16 6 C -0.10 -2.78 5.05 -19.85 -0.10 -2.88 16 7 C -0.11 -3.39 5.19 -19.86 -0.10 -3.50 16 8 C -0.12 -3.35 9.31 22.34 0.21 -3.15 16 9 C 0.10 3.51 5.37 85.58 0.46 3.97 16 10 N -0.52 -21.19 4.43 -901.77 -4.00 -25.18 16 11 C 0.10 4.04 2.71 86.30 0.23 4.27 16 12 C 0.00 -0.19 0.88 -52.93 -0.05 -0.23 16 13 C -0.47 -27.09 9.22 25.60 0.24 -26.85 16 14 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 15 C 0.05 3.04 5.30 84.66 0.45 3.49 16 16 N -0.94 -58.96 13.95 21.45 0.30 -58.66 16 17 Si 0.94 45.77 24.02 68.60 1.65 47.42 16 18 H -0.25 -11.44 5.47 99.48 0.54 -10.89 16 19 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 20 H -0.26 -11.96 6.81 99.48 0.68 -11.28 16 21 C -0.21 -8.58 9.96 30.62 0.30 -8.28 16 22 C -0.17 -6.93 8.14 30.62 0.25 -6.68 16 23 C 0.04 1.44 6.00 86.26 0.52 1.96 16 24 C -0.11 -3.10 5.17 29.82 0.15 -2.94 16 25 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 29 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 30 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.08 3.31 5.46 -2.39 -0.01 3.29 16 35 H 0.04 1.45 5.84 -2.38 -0.01 1.43 16 36 H 0.05 2.21 2.91 -2.39 -0.01 2.20 16 37 H 0.26 15.57 8.32 -92.70 -0.77 14.80 16 38 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.09 3.26 8.04 -2.39 -0.02 3.25 16 42 H 0.07 2.44 6.58 -2.39 -0.02 2.42 16 43 H 0.08 2.60 8.05 -2.39 -0.02 2.58 16 44 H 0.07 2.00 7.06 -2.39 -0.02 1.98 16 45 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -65.81 340.35 2.50 -63.31 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.76 Total: 23.62 kcal Atomic # 6 Polarization: -54.28 SS G_CDS: 3.78 Total: -50.50 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -3.70 Total: -83.85 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.65 Total: 47.42 kcal Total: -65.81 2.50 -63.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198851502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.491 kcal (2) G-P(sol) polarization free energy of solvation -65.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds