Wall clock time and date at job start Tue Mar 31 2020 06:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38283 * 119.96205 * 2 1 4 4 C 1.38235 * 120.11876 * 179.97438 * 3 2 1 5 5 C 1.38267 * 120.04392 * 359.97438 * 4 3 2 6 6 Cl 1.73605 * 120.03911 * 179.97438 * 5 4 3 7 7 C 1.38816 * 119.92169 * 0.02562 * 5 4 3 8 8 O 1.35936 * 120.05885 * 179.72255 * 7 5 4 9 9 C 1.34262 * 117.00068 * 81.92853 * 8 7 5 10 10 O 1.20823 * 119.99669 * 5.51147 * 9 8 7 11 11 C 1.50701 * 120.00284 * 185.50775 * 9 8 7 12 12 S 1.80997 * 109.47111 * 180.02562 * 11 9 8 13 13 C 1.76205 * 99.99983 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99820 * 359.97438 * 13 12 11 15 15 C 1.38793 * 120.00174 * 180.02562 * 13 12 11 16 16 N 1.31637 * 120.00063 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47295 * 59.99780 * 17 15 13 19 19 H 1.48501 * 109.47111 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47052 * 299.99709 * 17 15 13 21 21 C 1.38145 * 119.95972 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47165 * 90.00167 * 1 2 3 23 23 H 1.09001 * 109.47142 * 210.00495 * 1 2 3 24 24 H 1.09001 * 109.46987 * 329.99980 * 1 2 3 25 25 H 1.08000 * 119.94101 * 359.95193 * 3 2 1 26 26 H 1.07997 * 119.98181 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.47181 * 300.00754 * 11 9 8 28 28 H 1.09005 * 109.46899 * 59.99927 * 11 9 8 29 29 H 0.96996 * 120.00279 * 180.02562 * 16 15 13 30 30 H 1.08005 * 120.02059 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5800 1.2018 0.0005 5 6 4.2755 0.0068 0.0016 6 17 6.0115 0.0117 0.0016 7 6 3.5840 -1.1969 0.0016 8 8 4.2650 -2.3733 -0.0030 9 6 4.7197 -2.8191 1.1790 10 8 4.4324 -2.2340 2.1963 11 6 5.5884 -4.0492 1.2368 12 16 6.0351 -4.3919 2.9570 13 6 7.0208 -5.8356 2.7353 14 1 7.1804 -6.2335 1.7441 15 6 7.5912 -6.4620 3.8347 16 7 7.3962 -5.9774 5.0430 17 14 8.6367 -7.9920 3.5996 18 1 9.7956 -7.6706 2.7285 19 1 9.1262 -8.4647 4.9195 20 1 7.8199 -9.0569 2.9638 21 6 2.1969 -1.1969 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6560 2.1324 -0.0008 26 1 4.1171 2.1387 0.0001 27 1 5.0426 -4.8991 0.8272 28 1 6.4933 -3.8827 0.6523 29 1 7.7951 -6.4149 5.8112 30 1 1.6565 -2.1320 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192501607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:14 Heat of formation + Delta-G solvation = -64.071362 kcal Electronic energy + Delta-G solvation = -17199.198321 eV Core-core repulsion = 14111.966718 eV Total energy + Delta-G solvation = -3087.231603 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 286.022 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14761 -38.99523 -36.64399 -36.53220 -32.64978 -32.50085 -30.99893 -29.39589 -27.08561 -25.58974 -23.58925 -22.41124 -20.60825 -18.08684 -17.77524 -16.88852 -16.85754 -16.22942 -15.02533 -14.86024 -14.63075 -14.15432 -14.12497 -13.84121 -13.29028 -12.94621 -12.83174 -12.70054 -12.52675 -12.05276 -11.74308 -11.30343 -11.18797 -11.12181 -11.06977 -10.85386 -10.70024 -10.24307 -9.94932 -9.12167 -9.10057 -8.66844 -8.39556 -6.62962 -6.28653 -4.02039 0.77101 0.95136 2.01665 2.48052 2.62129 3.19657 3.21351 3.26050 3.34813 3.56412 4.13098 4.46981 4.55467 4.67801 4.88823 5.03543 5.07205 5.24900 5.30731 5.34152 5.45845 5.70026 5.70740 5.72780 5.86916 5.93217 6.02293 6.18966 6.38246 6.74034 7.53711 8.09747 8.28635 9.16628 10.78783 Molecular weight = 286.02amu Principal moments of inertia in cm(-1) A = 0.030700 B = 0.003821 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.840620 B = 7325.633982 C = 7787.697022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.071 4.071 3 C -0.111 4.111 4 C -0.095 4.095 5 C -0.049 4.049 6 Cl -0.051 7.051 7 C 0.108 3.892 8 O -0.296 6.296 9 C 0.478 3.522 10 O -0.465 6.465 11 C -0.126 4.126 12 S -0.054 6.054 13 C -0.538 4.538 14 H 0.076 0.924 15 C 0.076 3.924 16 N -0.867 5.867 17 Si 0.922 3.078 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.273 1.273 21 C -0.110 4.110 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.136 0.864 26 H 0.140 0.860 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.270 0.730 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 12.865 -12.449 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.071 4.071 3 C -0.129 4.129 4 C -0.114 4.114 5 C -0.077 4.077 6 Cl -0.022 7.022 7 C 0.065 3.935 8 O -0.213 6.213 9 C 0.320 3.680 10 O -0.347 6.347 11 C -0.274 4.274 12 S 0.173 5.827 13 C -0.686 4.686 14 H 0.095 0.905 15 C -0.134 4.134 16 N -0.502 5.502 17 Si 0.748 3.252 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.128 4.128 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.153 0.847 26 H 0.158 0.842 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.099 13.582 -10.954 20.680 hybrid contribution 1.227 -1.569 -1.246 2.349 sum -9.872 12.014 -12.199 19.764 Atomic orbital electron populations 1.20816 0.90114 1.03438 1.02702 1.19864 0.96705 0.92203 0.98314 1.21042 0.93173 0.98107 1.00580 1.20955 0.94266 0.96402 0.99763 1.21288 0.85921 0.94405 1.06038 1.98401 1.08263 1.98848 1.96667 1.18264 0.90301 0.83502 1.01432 1.84683 1.65738 1.34919 1.35922 1.23793 0.78046 0.85762 0.80419 1.90700 1.53070 1.56573 1.34324 1.23330 1.00361 0.94266 1.09403 1.85454 1.65212 1.36393 0.95666 1.22802 1.36465 1.12929 0.96379 0.90549 1.24996 0.96094 0.97982 0.94335 1.69999 1.42360 1.39598 0.98259 0.86173 0.80000 0.81402 0.77659 1.19811 1.20755 1.19798 1.21104 0.91637 0.99317 1.00763 0.90682 0.91007 0.91021 0.84654 0.84234 0.87619 0.87571 0.91973 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.07 -0.73 5.88 -104.64 -0.62 -1.34 16 3 C -0.11 -1.07 9.70 -39.57 -0.38 -1.45 16 4 C -0.10 -1.08 9.83 -39.57 -0.39 -1.46 16 5 C -0.05 -0.72 6.31 -39.36 -0.25 -0.96 16 6 Cl -0.05 -0.77 28.14 -51.86 -1.46 -2.23 16 7 C 0.11 1.67 4.94 -39.19 -0.19 1.48 16 8 O -0.30 -5.10 9.56 -23.65 -0.23 -5.33 16 9 C 0.48 9.50 7.48 36.01 0.27 9.77 16 10 O -0.46 -10.49 15.61 -18.75 -0.29 -10.78 16 11 C -0.13 -2.60 6.27 36.01 0.23 -2.37 16 12 S -0.05 -1.43 20.58 -107.50 -2.21 -3.64 16 13 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 14 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 15 C 0.08 2.12 5.49 -17.43 -0.10 2.03 16 16 N -0.87 -25.73 13.22 55.49 0.73 -24.99 16 17 Si 0.92 21.12 29.55 -169.99 -5.02 16.09 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C -0.11 -1.41 9.64 -39.44 -0.38 -1.79 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 24 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 25 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 26 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 27 H 0.11 1.98 8.14 -51.91 -0.42 1.56 16 28 H 0.11 2.05 8.14 -51.91 -0.42 1.62 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 303.91 15.07 4.58 4.58 Total: -1.00 -32.55 303.91 -7.98 -40.53 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -2.92 Total: -2.92 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -1.16 Total: -11.31 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.73 Total: -24.99 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.52 Total: -16.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.46 Total: -2.23 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.55 -7.98 -40.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192501607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.542 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds