Wall clock time and date at job start Tue Mar 31 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46895 * 109.47259 * 65.00243 * 13 2 1 15 15 C 1.46902 * 111.00052 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46911 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.46954 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47410 * 179.97438 * 17 16 15 19 19 C 1.42891 * 114.00354 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.47487 * 180.02562 * 19 18 17 21 21 H 1.09006 * 109.86966 * 53.99710 * 20 19 18 22 22 C 1.54098 * 109.88230 * 175.00103 * 20 19 18 23 23 C 1.54805 * 104.18894 * 121.45718 * 22 20 19 24 24 C 1.54997 * 102.09169 * 20.87963 * 23 22 20 25 25 O 1.43745 * 109.88098 * 292.83591 * 20 19 18 26 26 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 28 28 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 29 29 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 30 30 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 31 31 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 32 32 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 33 33 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 34 34 H 1.00894 * 110.99896 * 56.04225 * 14 13 2 35 35 H 1.08999 * 109.46615 * 299.99647 * 15 14 13 36 36 H 1.08994 * 109.47343 * 59.99891 * 15 14 13 37 37 H 1.08999 * 109.47217 * 299.99308 * 16 15 14 38 38 H 1.08994 * 109.47182 * 59.99822 * 16 15 14 39 39 H 1.09004 * 109.47528 * 300.00078 * 17 16 15 40 40 H 1.09008 * 109.47006 * 59.99912 * 17 16 15 41 41 H 1.09000 * 109.47111 * 300.00484 * 19 18 17 42 42 H 1.08999 * 109.47279 * 60.00465 * 19 18 17 43 43 H 1.09006 * 110.48710 * 240.13533 * 22 20 19 44 44 H 1.09000 * 110.48643 * 2.77819 * 22 20 19 45 45 H 1.08998 * 110.91272 * 139.08394 * 23 22 20 46 46 H 1.09001 * 110.90679 * 262.68489 * 23 22 20 47 47 H 1.08996 * 110.61676 * 81.48405 * 24 23 22 48 48 H 1.09000 * 110.61681 * 204.31797 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6273 -3.6672 16 6 1.7015 0.1902 -4.8892 17 6 2.1951 -0.5017 -6.1615 18 8 1.7992 0.2614 -7.3030 19 6 2.2123 -0.3010 -8.5499 20 6 1.7372 0.5945 -9.6958 21 1 2.0799 1.6166 -9.5337 22 6 2.2834 0.0650 -11.0358 23 6 1.0155 -0.2096 -11.8805 24 6 -0.0429 0.6758 -11.1747 25 8 0.3024 0.5642 -9.7773 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 3.1262 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2952 31 1 1.9007 -0.0402 5.6795 32 1 3.1263 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.9882 0.9872 -2.3966 35 1 3.2117 -0.7051 -3.6404 36 1 1.6905 -1.6250 -3.7296 37 1 0.6146 0.2677 -4.9158 38 1 2.1355 1.1881 -4.8270 39 1 3.2821 -0.5789 -6.1348 40 1 1.7614 -1.4998 -6.2239 41 1 3.2995 -0.3741 -8.5732 42 1 1.7788 -1.2949 -8.6615 43 1 2.9073 0.8179 -11.5177 44 1 2.8459 -0.8558 -10.8814 45 1 1.1604 0.1062 -12.9137 46 1 0.7366 -1.2622 -11.8325 47 1 0.0377 1.7102 -11.5086 48 1 -1.0469 0.2923 -11.3563 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602515744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:06 Heat of formation + Delta-G solvation = -119.224118 kcal Electronic energy + Delta-G solvation = -21787.659451 eV Core-core repulsion = 18455.625250 eV Total energy + Delta-G solvation = -3332.034201 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 285.209 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.96490 -38.13227 -37.04928 -34.67945 -32.71058 -32.42288 -31.48174 -30.31352 -27.46197 -26.17944 -25.29365 -23.73569 -22.52933 -21.85211 -21.71809 -21.17922 -19.02627 -17.36576 -16.79701 -16.72712 -16.34281 -16.25276 -15.82106 -15.07267 -14.84940 -14.30971 -14.12205 -14.01557 -13.87025 -13.68677 -13.06638 -12.64384 -12.44663 -12.25733 -12.21134 -12.00006 -11.69568 -11.65041 -11.59581 -11.42749 -11.24835 -11.15456 -11.01628 -10.92538 -10.66739 -10.40462 -10.06406 -9.85524 -9.75459 -9.70753 -9.36929 -9.02270 -8.48788 -8.17086 -5.99022 -3.95758 3.21280 3.33412 3.40575 3.43742 3.44188 4.02993 4.25856 4.38295 4.47133 4.49353 4.67674 4.76891 4.80333 4.87047 4.98096 5.06505 5.12127 5.14585 5.17549 5.28304 5.30288 5.34350 5.36790 5.41429 5.49313 5.56680 5.63547 5.65603 5.78827 6.04688 6.07666 6.13573 6.34575 6.46555 6.48844 6.63838 6.88313 6.95632 7.08334 7.19380 7.28474 7.35355 7.50119 7.63099 7.86107 8.60927 9.07004 9.63904 11.14440 Molecular weight = 285.21amu Principal moments of inertia in cm(-1) A = 0.052560 B = 0.001828 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.598828 B =15311.806361 C =15615.490030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 H 0.060 0.940 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.062 3.938 14 N -0.687 5.687 15 C 0.062 3.938 16 C -0.116 4.116 17 C 0.065 3.935 18 O -0.380 6.380 19 C 0.065 3.935 20 C 0.078 3.922 21 H 0.077 0.923 22 C -0.151 4.151 23 C -0.156 4.156 24 C 0.042 3.958 25 O -0.362 6.362 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.340 0.660 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.322 -2.089 -34.742 34.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.318 5.318 15 C -0.068 4.068 16 C -0.153 4.153 17 C -0.012 4.012 18 O -0.299 6.299 19 C -0.012 4.012 20 C 0.020 3.980 21 H 0.095 0.905 22 C -0.188 4.188 23 C -0.194 4.194 24 C -0.035 4.035 25 O -0.281 6.281 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.462 -2.227 -34.377 34.480 hybrid contribution 1.856 -0.943 0.090 2.084 sum 3.318 -3.170 -34.287 34.593 Atomic orbital electron populations 1.21604 0.95226 1.00642 1.00747 1.21017 0.96421 0.99050 0.92873 0.92172 1.19617 0.95679 0.95904 0.93517 1.21146 1.35223 1.09558 0.89100 0.90799 1.25032 0.95695 0.96946 0.95961 1.69918 1.47279 1.39267 0.98006 0.86798 0.80625 0.84399 0.77548 1.20380 1.19170 1.21511 1.22179 0.97046 0.97784 0.89681 1.60446 1.64126 1.05871 1.01312 1.21802 0.97035 0.98275 0.89641 1.21459 1.03120 0.99501 0.91265 1.22464 0.98192 0.94750 0.85829 1.87935 1.78826 1.49858 1.13270 1.22678 0.98017 0.96619 0.83930 1.22756 0.82182 0.99493 0.93544 0.90516 1.22943 0.98584 1.02465 0.94843 1.23145 0.94993 1.01387 0.99834 1.23581 0.99247 0.99019 0.81607 1.89017 1.20158 1.94735 1.24199 0.94243 0.92241 0.93612 0.96974 0.97051 0.92862 0.95842 0.91556 0.84275 0.95609 0.91138 0.90066 0.91285 0.93579 0.93257 0.92213 0.92639 0.90067 0.90156 0.90041 0.90366 0.92102 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 2 C -0.07 -1.50 2.48 -90.62 -0.22 -1.73 16 3 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.69 8.96 -34.44 -0.31 -15.00 16 6 H 0.07 2.27 7.30 -52.49 -0.38 1.89 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 9 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C 0.06 1.03 5.07 -3.83 -0.02 1.01 16 14 N -0.69 -9.86 5.95 -113.78 -0.68 -10.54 16 15 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 16 C -0.12 -1.27 5.84 -26.73 -0.16 -1.43 16 17 C 0.06 0.64 5.94 37.16 0.22 0.86 16 18 O -0.38 -4.37 10.33 -36.86 -0.38 -4.75 16 19 C 0.06 0.55 5.39 37.15 0.20 0.75 16 20 C 0.08 0.63 3.71 -26.16 -0.10 0.53 16 21 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 22 C -0.15 -0.75 6.64 -25.21 -0.17 -0.92 16 23 C -0.16 -0.73 7.15 -24.73 -0.18 -0.91 16 24 C 0.04 0.27 7.72 38.21 0.29 0.57 16 25 O -0.36 -3.75 11.18 -36.86 -0.41 -4.16 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 28 H 0.04 0.81 7.75 -51.92 -0.40 0.41 16 29 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 30 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.34 4.65 8.73 -39.30 -0.34 4.30 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.33 7.70 -51.93 -0.40 -0.07 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -32.52 380.18 -9.39 -41.91 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -9.43 Total: -1.91 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -0.32 Total: -16.20 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.10 Total: -38.02 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.79 Total: -8.91 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.52 -9.39 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602515744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.315 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds