Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38287 * 119.98050 * 2 1 4 4 C 1.38235 * 120.12421 * 180.02562 * 3 2 1 5 5 C 1.38194 * 120.07581 * 0.23610 * 4 3 2 6 6 C 1.38677 * 119.95625 * 359.48497 * 5 4 3 7 7 O 1.35938 * 120.05974 * 180.25861 * 6 5 4 8 8 C 1.34259 * 116.99797 * 261.69005 * 7 6 5 9 9 O 1.20827 * 120.00439 * 5.51978 * 8 7 6 10 10 C 1.50702 * 119.99788 * 185.52049 * 8 7 6 11 11 S 1.81003 * 109.47037 * 179.97438 * 10 8 7 12 12 C 1.76195 * 99.99949 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00050 * 0.02562 * 12 11 10 14 14 C 1.38804 * 120.00078 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00169 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47020 * 60.00169 * 16 14 12 18 18 H 1.48498 * 109.46964 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46774 * 300.00209 * 16 14 12 20 20 C 1.38223 * 119.97931 * 179.97438 * 2 1 3 21 21 Cl 1.73596 * 120.03861 * 0.04175 * 20 2 1 22 22 H 1.09001 * 109.47382 * 90.00316 * 1 2 3 23 23 H 1.08999 * 109.46795 * 209.99840 * 1 2 3 24 24 H 1.09000 * 109.47094 * 330.00015 * 1 2 3 25 25 H 1.07999 * 119.93808 * 359.97438 * 3 2 1 26 26 H 1.07996 * 119.96119 * 179.97438 * 4 3 2 27 27 H 1.07997 * 120.02013 * 179.72819 * 5 4 3 28 28 H 1.09001 * 109.47091 * 299.99940 * 10 8 7 29 29 H 1.08998 * 109.47165 * 60.00095 * 10 8 7 30 30 H 0.96999 * 120.00187 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1978 0.0000 4 6 3.5804 1.2013 -0.0005 5 6 4.2759 0.0072 -0.0060 6 6 3.5863 -1.1959 -0.0002 7 8 4.2684 -2.3718 -0.0002 8 6 4.4196 -2.9886 -1.1831 9 8 4.0470 -2.4490 -2.1979 10 6 5.0541 -4.3541 -1.2451 11 16 5.1146 -4.9138 -2.9654 12 6 5.8799 -6.4860 -2.7489 13 1 6.1540 -6.8216 -1.7596 14 6 6.1296 -7.2938 -3.8497 15 7 5.7952 -6.8850 -5.0554 16 14 6.9404 -8.9610 -3.6202 17 1 6.0940 -9.8059 -2.7398 18 1 7.0958 -9.6218 -4.9409 19 1 8.2763 -8.7801 -2.9974 20 6 2.1977 -1.1973 0.0005 21 17 1.3302 -2.7010 0.0001 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6567 2.1324 -0.0004 26 1 4.1174 2.1383 -0.0010 27 1 5.3559 0.0109 -0.0108 28 1 6.0661 -4.3031 -0.8434 29 1 4.4642 -5.0560 -0.6556 30 1 5.9700 -7.4493 -5.8247 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774661663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = -62.579354 kcal Electronic energy + Delta-G solvation = -17294.168126 eV Core-core repulsion = 14207.001221 eV Total energy + Delta-G solvation = -3087.166905 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 286.022 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14227 -39.00099 -36.60850 -36.51817 -32.83030 -32.50142 -30.77667 -29.32974 -27.23959 -25.58942 -23.56726 -22.18838 -20.76932 -18.09382 -17.75318 -16.88086 -16.81476 -16.24280 -15.04812 -14.86145 -14.72178 -14.26745 -14.19726 -13.68364 -13.19544 -12.97785 -12.78961 -12.51310 -12.38735 -11.94105 -11.79974 -11.57793 -11.17009 -11.12393 -11.06961 -10.85362 -10.62507 -10.23566 -9.94905 -9.12194 -8.89481 -8.80987 -8.39613 -6.63024 -6.28717 -4.02040 0.79209 0.94776 2.01481 2.48225 2.63092 3.20127 3.21309 3.26073 3.35705 3.57528 4.13084 4.41711 4.59520 4.78485 4.90406 5.00615 5.07145 5.27759 5.34262 5.39478 5.41283 5.64800 5.71231 5.86199 5.94407 6.00406 6.02518 6.14429 6.38553 6.74670 7.53656 8.10067 8.28565 9.16572 10.78719 Molecular weight = 286.02amu Principal moments of inertia in cm(-1) A = 0.034354 B = 0.003842 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.839967 B = 7286.122527 C = 7603.422278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C -0.112 4.112 4 C -0.099 4.099 5 C -0.115 4.115 6 C 0.107 3.893 7 O -0.296 6.296 8 C 0.478 3.522 9 O -0.465 6.465 10 C -0.126 4.126 11 S -0.054 6.054 12 C -0.538 4.538 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.867 5.867 16 Si 0.922 3.078 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.046 4.046 21 Cl -0.048 7.048 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 14.878 12.425 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.067 4.067 3 C -0.130 4.130 4 C -0.117 4.117 5 C -0.133 4.133 6 C 0.064 3.936 7 O -0.213 6.213 8 C 0.320 3.680 9 O -0.347 6.347 10 C -0.274 4.274 11 S 0.173 5.827 12 C -0.686 4.686 13 H 0.094 0.906 14 C -0.134 4.134 15 N -0.502 5.502 16 Si 0.748 3.252 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.074 4.074 21 Cl -0.019 7.019 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.153 0.847 26 H 0.154 0.846 27 H 0.158 0.842 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.908 15.390 10.935 20.468 hybrid contribution 0.910 -1.768 1.228 2.337 sum -6.998 13.621 12.163 19.557 Atomic orbital electron populations 1.20885 0.89787 1.03542 1.03324 1.19690 0.96989 0.90817 0.99212 1.21052 0.94203 0.97121 1.00647 1.21091 0.94141 0.97730 0.98721 1.21230 1.01049 0.90570 1.00497 1.18291 0.88305 0.85505 1.01476 1.84681 1.68140 1.32502 1.35947 1.23794 0.76451 0.87395 0.80395 1.90701 1.44753 1.64711 1.34513 1.23329 1.03537 0.91107 1.09385 1.85452 1.80317 1.21163 0.95793 1.22804 1.46495 1.02803 0.96487 0.90552 1.24997 0.95254 0.98812 0.94334 1.69998 1.44353 1.37538 0.98325 0.86175 0.79662 0.81751 0.77657 1.19805 1.20752 1.19802 1.21170 0.91273 0.88459 1.06471 1.98387 1.75972 1.30919 1.96580 0.90263 0.90665 0.90860 0.84687 0.84574 0.84248 0.87614 0.87590 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.61 36.01 0.35 -0.72 16 2 C -0.07 -0.77 5.88 -104.61 -0.62 -1.39 16 3 C -0.11 -1.08 9.70 -39.56 -0.38 -1.47 16 4 C -0.10 -0.98 10.04 -39.60 -0.40 -1.38 16 5 C -0.11 -1.46 9.99 -39.44 -0.39 -1.85 16 6 C 0.11 1.67 4.95 -39.19 -0.19 1.47 16 7 O -0.30 -5.11 9.57 -23.65 -0.23 -5.34 16 8 C 0.48 9.50 7.46 36.01 0.27 9.77 16 9 O -0.46 -10.49 15.61 -18.75 -0.29 -10.79 16 10 C -0.13 -2.60 6.27 36.01 0.23 -2.37 16 11 S -0.05 -1.43 20.57 -107.50 -2.21 -3.64 16 12 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 13 H 0.08 2.01 7.80 -52.49 -0.41 1.61 16 14 C 0.08 2.12 5.49 -17.43 -0.10 2.03 16 15 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 16 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C -0.05 -0.68 6.30 -39.36 -0.25 -0.93 16 21 Cl -0.05 -0.72 26.46 -51.86 -1.37 -2.09 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.70 6.90 -51.93 -0.36 0.34 16 24 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 25 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 26 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 27 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.11 1.99 8.14 -51.92 -0.42 1.56 16 29 H 0.11 2.04 8.14 -51.92 -0.42 1.62 16 30 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -32.60 301.18 -7.91 -40.51 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -2.86 Total: -2.69 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.19 Total: -11.60 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.73 Total: -24.99 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.52 Total: -16.12 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.37 Total: -2.09 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.60 -7.91 -40.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774661663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.071 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds