Wall clock time and date at job start Tue Mar 31 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38287 * 119.98050 * 2 1 4 4 C 1.38235 * 120.12421 * 180.02562 * 3 2 1 5 5 C 1.38194 * 120.07581 * 0.23610 * 4 3 2 6 6 C 1.38677 * 119.95625 * 359.48497 * 5 4 3 7 7 O 1.35938 * 120.05974 * 180.25861 * 6 5 4 8 8 C 1.34259 * 116.99797 * 261.69005 * 7 6 5 9 9 O 1.20827 * 120.00439 * 5.51978 * 8 7 6 10 10 C 1.50702 * 119.99788 * 185.52049 * 8 7 6 11 11 S 1.81003 * 109.47037 * 179.97438 * 10 8 7 12 12 C 1.76195 * 99.99949 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00050 * 0.02562 * 12 11 10 14 14 C 1.38804 * 120.00078 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00169 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47020 * 60.00169 * 16 14 12 18 18 H 1.48498 * 109.46964 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46774 * 300.00209 * 16 14 12 20 20 C 1.38223 * 119.97931 * 179.97438 * 2 1 3 21 21 Cl 1.73596 * 120.03861 * 0.04175 * 20 2 1 22 22 H 1.09001 * 109.47382 * 90.00316 * 1 2 3 23 23 H 1.08999 * 109.46795 * 209.99840 * 1 2 3 24 24 H 1.09000 * 109.47094 * 330.00015 * 1 2 3 25 25 H 1.07999 * 119.93808 * 359.97438 * 3 2 1 26 26 H 1.07996 * 119.96119 * 179.97438 * 4 3 2 27 27 H 1.07997 * 120.02013 * 179.72819 * 5 4 3 28 28 H 1.09001 * 109.47091 * 299.99940 * 10 8 7 29 29 H 1.08998 * 109.47165 * 60.00095 * 10 8 7 30 30 H 0.96999 * 120.00187 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1978 0.0000 4 6 3.5804 1.2013 -0.0005 5 6 4.2759 0.0072 -0.0060 6 6 3.5863 -1.1959 -0.0002 7 8 4.2684 -2.3718 -0.0002 8 6 4.4196 -2.9886 -1.1831 9 8 4.0470 -2.4490 -2.1979 10 6 5.0541 -4.3541 -1.2451 11 16 5.1146 -4.9138 -2.9654 12 6 5.8799 -6.4860 -2.7489 13 1 6.1540 -6.8216 -1.7596 14 6 6.1296 -7.2938 -3.8497 15 7 5.7952 -6.8850 -5.0554 16 14 6.9404 -8.9610 -3.6202 17 1 6.0940 -9.8059 -2.7398 18 1 7.0958 -9.6218 -4.9409 19 1 8.2763 -8.7801 -2.9974 20 6 2.1977 -1.1973 0.0005 21 17 1.3302 -2.7010 0.0001 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6567 2.1324 -0.0004 26 1 4.1174 2.1383 -0.0010 27 1 5.3559 0.0109 -0.0108 28 1 6.0661 -4.3031 -0.8434 29 1 4.4642 -5.0560 -0.6556 30 1 5.9700 -7.4493 -5.8247 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774661663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:08 Heat of formation + Delta-G solvation = -80.678881 kcal Electronic energy + Delta-G solvation = -17294.952980 eV Core-core repulsion = 14207.001221 eV Total energy + Delta-G solvation = -3087.951759 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 286.022 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.45796 -40.08692 -38.02829 -37.59876 -34.62750 -33.70164 -32.04597 -30.68702 -28.04921 -27.73069 -24.76697 -23.13123 -22.00991 -19.99505 -19.18689 -18.04533 -18.00249 -17.56481 -16.90789 -16.36734 -16.24268 -15.48542 -15.23151 -14.71591 -14.62159 -14.47528 -14.19820 -13.53417 -13.42777 -13.22373 -12.96841 -12.88226 -12.73866 -12.66197 -12.55867 -12.33144 -11.84301 -11.80795 -11.71634 -11.15922 -10.43394 -9.83385 -9.78167 -8.76701 -8.38835 -6.19411 -0.23338 0.04604 0.92268 0.94453 1.07485 1.40660 1.44226 1.53456 1.83608 2.22224 2.51347 2.96343 3.21217 3.47103 3.70711 3.86820 4.07331 4.08510 4.20118 4.34623 4.39164 4.52517 4.70052 4.74104 5.01078 5.11334 5.17316 5.26705 5.32339 5.39394 5.71620 6.16363 6.62542 7.02650 8.70230 Molecular weight = 286.02amu Principal moments of inertia in cm(-1) A = 0.034354 B = 0.003842 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.839967 B = 7286.122527 C = 7603.422278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C -0.098 4.098 4 C -0.090 4.090 5 C -0.125 4.125 6 C 0.061 3.939 7 O -0.288 6.288 8 C 0.486 3.514 9 O -0.498 6.498 10 C -0.107 4.107 11 S -0.129 6.129 12 C -0.551 4.551 13 H 0.087 0.913 14 C 0.019 3.981 15 N -0.910 5.910 16 Si 0.999 3.001 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.261 1.261 20 C -0.070 4.070 21 Cl -0.067 7.067 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.178 0.822 26 H 0.176 0.824 27 H 0.149 0.851 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.274 16.295 13.938 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.075 4.075 3 C -0.116 4.116 4 C -0.107 4.107 5 C -0.143 4.143 6 C 0.019 3.981 7 O -0.204 6.204 8 C 0.329 3.671 9 O -0.383 6.383 10 C -0.255 4.255 11 S 0.098 5.902 12 C -0.699 4.699 13 H 0.105 0.895 14 C -0.187 4.187 15 N -0.546 5.546 16 Si 0.821 3.179 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.185 1.185 20 C -0.097 4.097 21 Cl -0.038 7.038 22 H 0.099 0.901 23 H 0.085 0.915 24 H 0.123 0.877 25 H 0.195 0.805 26 H 0.194 0.806 27 H 0.167 0.833 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.829 16.821 12.483 22.362 hybrid contribution 0.814 -1.981 0.856 2.306 sum -7.015 14.840 13.339 21.151 Atomic orbital electron populations 1.20956 0.88038 1.04734 1.03731 1.20145 0.98454 0.90459 0.98445 1.21611 0.94365 0.97869 0.97773 1.21594 0.94558 0.98102 0.96474 1.21540 1.01847 0.90609 1.00326 1.18756 0.88987 0.85422 1.04982 1.84644 1.68114 1.33655 1.34003 1.23503 0.75674 0.87030 0.80865 1.90676 1.46213 1.65544 1.35860 1.23114 1.05299 0.92115 1.04978 1.85543 1.80714 1.22097 1.01847 1.23170 1.46502 1.03007 0.97209 0.89542 1.26106 0.95628 1.03150 0.93793 1.70153 1.45723 1.39314 0.99364 0.84991 0.78883 0.76176 0.77896 1.18714 1.20256 1.18523 1.21471 0.91193 0.88871 1.08141 1.98368 1.76236 1.32373 1.96779 0.90117 0.91495 0.87717 0.80490 0.80617 0.83332 0.85503 0.86154 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 9.61 71.24 0.68 -1.18 16 2 C -0.07 -1.58 5.88 -19.86 -0.12 -1.70 16 3 C -0.10 -1.52 9.70 22.28 0.22 -1.31 16 4 C -0.09 -1.46 10.04 22.26 0.22 -1.24 16 5 C -0.12 -2.97 9.99 22.36 0.22 -2.75 16 6 C 0.06 1.88 4.95 22.52 0.11 1.99 16 7 O -0.29 -10.05 9.57 4.43 0.04 -10.00 16 8 C 0.49 19.68 7.46 71.24 0.53 20.21 16 9 O -0.50 -23.17 15.61 21.96 0.34 -22.83 16 10 C -0.11 -4.46 6.27 71.24 0.45 -4.01 16 11 S -0.13 -7.09 20.57 -56.49 -1.16 -8.25 16 12 C -0.55 -31.15 9.50 67.96 0.65 -30.50 16 13 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 14 C 0.02 1.04 5.49 84.86 0.47 1.51 16 15 N -0.91 -55.01 13.22 21.65 0.29 -54.73 16 16 Si 1.00 43.08 29.55 68.60 2.03 45.10 16 17 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 18 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 20 C -0.07 -2.02 6.30 22.41 0.14 -1.88 16 21 Cl -0.07 -2.06 26.46 -2.72 -0.07 -2.13 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.18 6.90 -2.39 -0.02 1.16 16 24 H 0.10 0.97 8.09 -2.39 -0.02 0.95 16 25 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 26 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 27 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.13 4.72 8.14 -2.39 -0.02 4.70 16 29 H 0.12 4.65 8.14 -2.40 -0.02 4.63 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -73.32 301.18 6.20 -67.12 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.16 Total: 6.57 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 3.57 Total: -20.86 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.29 Total: -54.73 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: 0.39 Total: -32.83 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.16 Total: -8.25 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.07 Total: -2.13 kcal Total: -73.32 6.20 -67.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774661663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.555 kcal (2) G-P(sol) polarization free energy of solvation -73.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds