Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.47192 * 2 1 4 4 C 1.42887 * 114.00447 * 185.74207 * 3 2 1 5 5 C 1.52999 * 109.47381 * 210.02520 * 4 3 2 6 6 N 1.46902 * 109.46678 * 299.99618 * 5 4 3 7 7 C 1.46906 * 110.99754 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46930 * 204.99933 * 7 6 5 9 9 C 1.52998 * 109.47023 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47185 * 60.00423 * 9 8 7 11 11 C 1.50694 * 109.47196 * 59.99781 * 10 9 8 12 12 H 1.07997 * 120.00067 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99909 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00219 * 179.72221 * 13 11 10 15 15 Si 1.86805 * 120.00085 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47023 * 90.00179 * 15 13 11 17 17 H 1.48501 * 109.47080 * 210.00183 * 15 13 11 18 18 H 1.48491 * 109.47045 * 330.00271 * 15 13 11 19 19 C 1.53001 * 109.46794 * 299.99717 * 10 9 8 20 20 C 1.53001 * 109.47152 * 84.99985 * 7 6 5 21 21 O 1.42903 * 109.47770 * 90.02073 * 4 3 2 22 22 C 1.42899 * 113.99783 * 286.25139 * 21 4 3 23 23 C 1.53002 * 109.47009 * 186.66191 * 22 21 4 24 24 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47564 * 300.00410 * 1 2 3 26 26 H 1.09006 * 109.46754 * 60.00543 * 1 2 3 27 27 H 1.08999 * 109.47942 * 239.99873 * 2 1 3 28 28 H 1.09003 * 109.47264 * 119.99416 * 2 1 3 29 29 H 1.09000 * 109.47365 * 330.02137 * 4 3 2 30 30 H 1.09003 * 109.47588 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.47356 * 59.99376 * 5 4 3 32 32 H 1.00895 * 111.00151 * 303.95053 * 6 5 4 33 33 H 1.08997 * 109.46921 * 324.99841 * 7 6 5 34 34 H 1.09006 * 109.47292 * 60.00062 * 8 7 6 35 35 H 1.08993 * 109.47479 * 300.00165 * 8 7 6 36 36 H 1.09006 * 109.47276 * 300.00119 * 9 8 7 37 37 H 1.09004 * 109.47428 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.46986 * 179.97438 * 10 9 8 39 39 H 0.97002 * 120.00352 * 179.97438 * 14 13 11 40 40 H 1.08996 * 109.47309 * 179.97438 * 19 10 9 41 41 H 1.09006 * 109.47192 * 300.00013 * 19 10 9 42 42 H 1.08996 * 109.47250 * 299.99615 * 20 7 6 43 43 H 1.08993 * 109.46836 * 60.00092 * 20 7 6 44 44 H 1.09001 * 109.47124 * 306.65979 * 22 21 4 45 45 H 1.08997 * 109.47422 * 66.66289 * 22 21 4 46 46 H 1.09006 * 109.47198 * 59.99755 * 23 22 21 47 47 H 1.09003 * 109.47273 * 179.97438 * 23 22 21 48 48 H 1.09001 * 109.47004 * 299.99861 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4246 1.4624 -0.1306 5 6 3.9026 2.7236 0.5918 6 7 3.2589 3.9024 -0.0033 7 6 3.6956 5.1349 0.6663 8 6 2.6237 6.2136 0.4986 9 6 3.0782 7.4971 1.1965 10 6 4.3893 7.9798 0.5729 11 6 4.1772 8.2535 -0.8937 12 1 3.2046 8.0983 -1.3369 13 6 5.2250 8.7011 -1.6700 14 7 5.0413 8.9348 -2.9512 15 14 6.9074 8.9689 -0.9037 16 1 7.6990 7.7160 -0.9973 17 1 7.6138 10.0560 -1.6279 18 1 6.7468 9.3476 0.5231 19 6 5.4613 6.9010 0.7405 20 6 5.0066 5.6173 0.0422 21 8 3.7704 1.5462 -1.5146 22 6 3.6543 0.3082 -2.2187 23 6 4.2032 0.4747 -3.6371 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9023 0.5878 0.3109 30 1 4.9845 2.8117 0.4918 31 1 3.6389 2.6597 1.6475 32 1 3.4353 3.9484 -0.9956 33 1 3.8493 4.9372 1.7271 34 1 1.6896 5.8700 0.9433 35 1 2.4699 6.4113 -0.5621 36 1 3.2317 7.2991 2.2574 37 1 2.3143 8.2655 1.0775 38 1 4.7129 8.8944 1.0698 39 1 5.7783 9.2501 -3.4973 40 1 6.3952 7.2446 0.2959 41 1 5.6147 6.7030 1.8014 42 1 5.7703 4.8488 0.1616 43 1 4.8528 5.8150 -1.0186 44 1 4.2233 -0.4613 -1.6969 45 1 2.6057 0.0146 -2.2671 46 1 5.2519 0.7682 -3.5887 47 1 4.1151 -0.4698 -4.1740 48 1 3.6342 1.2441 -4.1589 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -109.367377 kcal Electronic energy + Delta-G solvation = -24163.289995 eV Core-core repulsion = 20831.683214 eV Total energy + Delta-G solvation = -3331.606781 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 285.209 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.45353 -38.20847 -36.40290 -34.86619 -32.35996 -31.64605 -30.74265 -29.86416 -29.27031 -26.50725 -24.21135 -23.51779 -22.48173 -21.94192 -21.59993 -20.61507 -18.65645 -17.69591 -17.34446 -16.20185 -15.85564 -15.31586 -14.91634 -14.60514 -14.25522 -13.98625 -13.85696 -13.77175 -13.32919 -12.97940 -12.87342 -12.49071 -12.34749 -12.19585 -12.05704 -11.99558 -11.97411 -11.69621 -11.53659 -11.29989 -11.18892 -10.89756 -10.71037 -10.35594 -10.07961 -9.96543 -9.89715 -9.75951 -9.67194 -9.21520 -9.02813 -8.72641 -8.42842 -7.75733 -5.96949 -3.93102 3.32372 3.38990 3.43135 3.45214 3.68327 4.39983 4.49568 4.66614 4.78665 4.88195 5.01951 5.02665 5.08507 5.21726 5.28504 5.35360 5.42291 5.46866 5.57312 5.66227 5.71062 5.75970 5.78974 5.82717 5.97494 5.99721 6.01718 6.21887 6.29932 6.39247 6.43297 6.53477 6.64098 6.75955 6.86508 7.03082 7.06657 7.20456 7.22020 7.23271 7.38103 7.56701 7.66098 7.91272 7.96247 8.65438 9.08879 9.66897 11.16270 Molecular weight = 285.21amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.004226 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.010514 B = 6623.793580 C = 7320.242014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.367 6.367 4 C 0.249 3.751 5 C 0.077 3.923 6 N -0.671 5.671 7 C 0.096 3.904 8 C -0.093 4.093 9 C -0.096 4.096 10 C 0.007 3.993 11 C -0.498 4.498 12 H 0.076 0.924 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.884 3.116 16 H -0.282 1.282 17 H -0.301 1.301 18 H -0.268 1.268 19 C -0.112 4.112 20 C -0.133 4.133 21 O -0.384 6.384 22 C 0.052 3.948 23 C -0.152 4.152 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.352 0.648 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.053 0.947 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.042 0.958 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.083 0.917 44 H 0.042 0.958 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 -20.220 5.891 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 O -0.287 6.287 4 C 0.153 3.847 5 C -0.053 4.053 6 N -0.302 5.302 7 C -0.013 4.013 8 C -0.131 4.131 9 C -0.134 4.134 10 C -0.012 4.012 11 C -0.536 4.536 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.543 5.543 15 Si 0.715 3.285 16 H -0.209 1.209 17 H -0.229 1.229 18 H -0.193 1.193 19 C -0.150 4.150 20 C -0.171 4.171 21 O -0.304 6.304 22 C -0.025 4.025 23 C -0.209 4.209 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.171 0.829 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.927 -19.914 6.032 21.174 hybrid contribution 2.172 -0.356 -0.014 2.201 sum -1.755 -20.270 6.018 21.217 Atomic orbital electron populations 1.21708 0.93562 1.01808 1.03558 1.22773 0.96332 0.84775 0.99653 1.88241 1.22654 1.25225 1.92588 1.23389 0.81272 0.97770 0.82256 1.21935 0.96456 0.88767 0.98167 1.60601 1.60058 1.00745 1.08845 1.21533 0.94165 0.88935 0.96659 1.21349 0.96004 0.93342 1.02444 1.21363 0.98684 0.96609 0.96755 1.19209 0.91410 0.93120 0.97482 1.21037 0.98140 1.43100 0.91297 0.90585 1.24997 0.98494 0.95149 0.94628 1.69906 1.32108 1.46804 1.05498 0.86899 0.85188 0.76855 0.79536 1.20906 1.22850 1.19319 1.21784 0.99405 0.96937 0.96898 1.22076 0.96007 0.96264 1.02804 1.88091 1.86745 1.32583 1.23022 1.22645 0.99635 0.86340 0.93842 1.21757 1.02248 1.02401 0.94540 0.91509 0.91648 0.91658 0.93322 0.93678 0.93075 0.93521 0.89663 0.82911 0.92163 0.93491 0.90649 0.94771 0.92805 0.95830 0.92940 0.93999 0.94851 0.94881 0.89802 0.93942 0.92857 0.91802 0.91365 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.04 0.41 6.25 37.16 0.23 0.64 16 3 O -0.37 -5.02 10.04 -59.04 -0.59 -5.61 16 4 C 0.25 3.20 3.13 37.16 0.12 3.31 16 5 C 0.08 1.08 5.63 -3.82 -0.02 1.05 16 6 N -0.67 -11.36 6.12 -106.72 -0.65 -12.01 16 7 C 0.10 1.75 2.47 -67.71 -0.17 1.58 16 8 C -0.09 -1.83 5.30 -26.73 -0.14 -1.97 16 9 C -0.10 -1.95 5.41 -26.73 -0.14 -2.10 16 10 C 0.01 0.15 2.18 -91.77 -0.20 -0.04 16 11 C -0.50 -13.74 7.19 -34.44 -0.25 -13.99 16 12 H 0.08 2.28 6.95 -52.49 -0.36 1.91 16 13 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 14 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 15 Si 0.88 22.41 24.37 -169.99 -4.14 18.27 16 16 H -0.28 -7.01 6.87 56.52 0.39 -6.63 16 17 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 18 H -0.27 -6.54 6.53 56.52 0.37 -6.18 16 19 C -0.11 -2.45 4.94 -26.70 -0.13 -2.58 16 20 C -0.13 -2.69 4.95 -26.70 -0.13 -2.82 16 21 O -0.38 -5.36 9.58 -59.04 -0.57 -5.93 16 22 C 0.05 0.55 5.78 37.16 0.21 0.76 16 23 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.43 5.04 -51.93 -0.26 0.17 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.54 7.63 -51.93 -0.40 0.14 16 30 H 0.05 0.64 7.43 -51.93 -0.39 0.26 16 31 H 0.09 1.10 8.06 -51.93 -0.42 0.68 16 32 H 0.35 6.45 7.86 -39.29 -0.31 6.15 16 33 H 0.06 1.03 7.80 -51.93 -0.41 0.63 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.68 6.62 -51.93 -0.34 1.34 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.61 7.45 -51.93 -0.39 0.22 16 43 H 0.08 1.96 7.21 -51.93 -0.37 1.59 16 44 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 45 H 0.05 0.54 5.84 -51.93 -0.30 0.24 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -30.77 358.04 -8.48 -39.25 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.74 Total: 4.01 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 0.04 Total: -16.35 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.12 Total: -39.05 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.16 Total: -11.54 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.14 Total: 18.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.77 -8.48 -39.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.113 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds