Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35987 * 117.00096 * 2 1 4 4 C 1.38565 * 120.07608 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.00269 * 180.02562 * 4 3 2 6 6 C 1.38248 * 120.14349 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.15181 * 359.97438 * 6 5 4 8 8 C 1.38570 * 119.99485 * 359.72506 * 7 6 5 9 9 O 1.35993 * 120.07150 * 180.27403 * 8 7 6 10 10 S 1.52197 * 113.99925 * 270.27269 * 9 8 7 11 11 O 1.42099 * 104.27928 * 191.07196 * 10 9 8 12 12 O 1.42101 * 104.28108 * 318.93196 * 10 9 8 13 13 C 1.81402 * 104.44745 * 75.00568 * 10 9 8 14 14 C 1.53005 * 109.47126 * 180.02562 * 13 10 9 15 15 C 1.50694 * 109.46931 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00499 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99830 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99971 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99961 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47189 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47238 * 120.00185 * 19 17 15 22 22 H 1.48506 * 109.46933 * 240.00279 * 19 17 15 23 23 H 1.09001 * 109.47103 * 300.00410 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99914 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.08006 * 119.99818 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.92930 * 179.97438 * 5 4 3 28 28 H 1.07998 * 119.92729 * 179.97438 * 6 5 4 29 29 H 1.07992 * 120.00147 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.46946 * 299.99345 * 13 10 9 31 31 H 1.08993 * 109.47541 * 59.99637 * 13 10 9 32 32 H 1.09002 * 109.46512 * 299.99414 * 14 13 10 33 33 H 1.09004 * 109.47114 * 59.99738 * 14 13 10 34 34 H 0.96997 * 119.99544 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9225 3.6057 -0.0011 6 6 3.3030 3.6797 -0.0016 7 6 4.0604 2.5232 -0.0011 8 6 3.4360 1.2862 0.0058 9 8 4.1796 0.1476 0.0119 10 16 4.5234 -0.3747 -1.3757 11 8 5.0541 -1.6717 -1.1404 12 8 3.3282 -0.1967 -2.1233 13 6 5.8201 0.7449 -1.9721 14 6 6.2551 0.3195 -3.3760 15 6 7.3319 1.2499 -3.8717 16 1 7.6717 2.0636 -3.2481 17 6 7.8833 1.0624 -5.1215 18 7 7.4692 0.0719 -5.8811 19 14 9.2175 2.2162 -5.7364 20 1 9.5023 3.2407 -4.6997 21 1 10.4521 1.4404 -6.0172 22 1 8.7591 2.8846 -6.9807 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2147 2.3197 -0.0014 27 1 1.3344 4.5115 -0.0019 28 1 3.7909 4.6432 -0.0024 29 1 5.1386 2.5839 -0.0019 30 1 5.4337 1.7636 -2.0051 31 1 6.6754 0.7023 -1.2978 32 1 6.6414 -0.6993 -3.3435 33 1 5.3996 0.3624 -4.0501 34 1 7.8574 -0.0601 -6.7602 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104104635.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -145.342818 kcal Electronic energy + Delta-G solvation = -20942.408293 eV Core-core repulsion = 17546.776426 eV Total energy + Delta-G solvation = -3395.631868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.075 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.28524 -40.08076 -38.32190 -38.21656 -37.18524 -35.93906 -33.23166 -31.63444 -31.10925 -28.24876 -27.67679 -24.70366 -23.78374 -23.20684 -21.60712 -19.67444 -19.27008 -18.66729 -18.43990 -18.15521 -16.97748 -16.69499 -16.62001 -16.48590 -15.85625 -15.42908 -15.23814 -15.13279 -14.48278 -14.17657 -13.87616 -13.77202 -13.36006 -13.33082 -13.19941 -13.13927 -12.95381 -12.80324 -12.53429 -12.31253 -12.13509 -12.08607 -12.06545 -11.74151 -11.11781 -10.65512 -10.08263 -9.32924 -8.25613 -6.40007 -0.98281 0.08930 0.29034 1.18998 1.42442 1.43574 1.56920 2.18952 2.38701 2.54106 2.62920 2.98802 3.08232 3.60692 3.74741 3.88159 3.95618 4.04916 4.21525 4.28648 4.35254 4.37565 4.51170 4.67173 4.68780 4.95811 5.04697 5.22040 5.23053 5.25382 5.37023 5.66611 5.68066 6.04484 6.26454 6.73325 7.30289 8.87300 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.022758 B = 0.005026 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.049780 B = 5569.507809 C = 6222.398518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.339 6.339 3 C 0.130 3.870 4 C -0.201 4.201 5 C -0.050 4.050 6 C -0.137 4.137 7 C -0.100 4.100 8 C -0.015 4.015 9 O -0.657 6.657 10 S 2.590 3.410 11 O -0.982 6.982 12 O -0.977 6.977 13 C -0.606 4.606 14 C 0.024 3.976 15 C -0.537 4.537 16 H 0.080 0.920 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.977 3.023 20 H -0.253 1.253 21 H -0.280 1.280 22 H -0.277 1.277 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.171 0.829 27 H 0.180 0.820 28 H 0.176 0.824 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.005 0.995 33 H 0.010 0.990 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 11.076 14.487 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.252 6.252 3 C 0.082 3.918 4 C -0.219 4.219 5 C -0.069 4.069 6 C -0.155 4.155 7 C -0.120 4.120 8 C -0.058 4.058 9 O -0.617 6.617 10 S 2.691 3.309 11 O -0.981 6.981 12 O -0.976 6.976 13 C -0.736 4.736 14 C -0.014 4.014 15 C -0.576 4.576 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.801 3.199 20 H -0.176 1.176 21 H -0.206 1.206 22 H -0.203 1.203 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.188 0.812 27 H 0.198 0.802 28 H 0.194 0.806 29 H 0.181 0.819 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.024 0.976 33 H 0.029 0.971 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.169 10.077 14.554 22.675 hybrid contribution 1.034 -0.086 -0.820 1.322 sum -13.135 9.990 13.734 21.470 Atomic orbital electron populations 1.23507 0.75470 1.05925 1.03194 1.86138 1.24598 1.26862 1.87635 1.19509 0.90705 0.86886 0.94748 1.21648 1.01956 0.90737 1.07575 1.21740 0.94896 0.98120 0.92106 1.21492 0.94241 0.98417 1.01398 1.21705 1.02851 0.89732 0.97721 1.18036 0.87244 0.82924 1.17550 1.85741 1.72361 1.47326 1.56238 1.05577 0.76276 0.75934 0.73137 1.93501 1.82025 1.38975 1.83553 1.93520 1.44882 1.86672 1.72488 1.30577 1.17430 1.16532 1.09051 1.18808 0.97332 0.96997 0.88303 1.21532 1.20362 1.14002 1.01701 0.90194 1.26150 0.99792 0.97331 0.96988 1.70119 1.44259 1.32130 1.11026 0.85215 0.77734 0.78477 0.78506 1.17621 1.20562 1.20272 0.89651 0.91125 0.86922 0.81179 0.80247 0.80649 0.81942 0.83248 0.83408 0.97640 0.97145 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -10.57 9.72 -72.51 -0.71 -11.27 16 3 C 0.13 3.80 5.93 22.57 0.13 3.94 16 4 C -0.20 -3.81 9.04 22.35 0.20 -3.61 16 5 C -0.05 -0.71 10.04 22.27 0.22 -0.48 16 6 C -0.14 -2.23 10.04 22.27 0.22 -2.01 16 7 C -0.10 -2.37 8.45 22.35 0.19 -2.18 16 8 C -0.02 -0.48 4.81 22.57 0.11 -0.37 16 9 O -0.66 -24.47 9.84 -60.48 -0.60 -25.07 16 10 S 2.59 110.50 5.17 -56.49 -0.29 110.20 16 11 O -0.98 -48.78 18.09 -118.57 -2.15 -50.92 16 12 O -0.98 -44.95 15.81 -117.13 -1.85 -46.81 16 13 C -0.61 -24.59 5.39 71.98 0.39 -24.21 16 14 C 0.02 1.30 4.98 29.85 0.15 1.45 16 15 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 16 H 0.08 4.05 7.74 -2.91 -0.02 4.02 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 19 Si 0.98 43.05 29.54 68.60 2.03 45.07 16 20 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 H 0.09 1.00 7.66 -2.39 -0.02 0.98 16 24 H 0.07 1.11 7.66 -2.38 -0.02 1.10 16 25 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.17 2.02 6.30 -2.91 -0.02 2.00 16 27 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 28 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 29 H 0.16 3.20 7.46 -2.91 -0.02 3.17 16 30 H 0.15 5.15 6.58 -2.39 -0.02 5.13 16 31 H 0.15 5.25 8.14 -2.39 -0.02 5.23 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -83.64 306.24 1.26 -82.38 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.11 Total: 8.96 kcal Atomic # 6 Polarization: -58.94 SS G_CDS: 3.43 Total: -55.52 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.28 Total: -57.03 kcal Atomic # 8 Polarization: -128.77 SS G_CDS: -5.30 Total: -134.07 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 110.50 SS G_CDS: -0.29 Total: 110.20 kcal Total: -83.64 1.26 -82.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104104635.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.958 kcal (2) G-P(sol) polarization free energy of solvation -83.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds