Wall clock time and date at job start Tue Mar 31 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47125 * 2 1 4 4 C 1.50703 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.33442 * 122.71850 * 124.94725 * 4 3 2 6 6 S 1.76172 * 108.06148 * 180.02562 * 5 4 3 7 7 C 1.70968 * 90.34164 * 0.02562 * 6 5 4 8 8 N 1.39006 * 124.94258 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00092 * 0.03053 * 8 7 6 10 10 O 1.21286 * 119.99984 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99937 * 179.97438 * 9 8 7 12 12 S 1.81002 * 109.47109 * 179.97438 * 11 9 8 13 13 C 1.76199 * 99.99758 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00324 * 0.02562 * 13 12 11 15 15 C 1.38807 * 119.99632 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99994 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99671 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47529 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47253 * 119.99933 * 17 15 13 20 20 H 1.48498 * 109.46960 * 239.99473 * 17 15 13 21 21 N 1.29623 * 110.10783 * 359.97438 * 7 6 5 22 22 H 1.09002 * 109.46825 * 300.00388 * 1 2 3 23 23 H 1.08998 * 109.46578 * 59.99829 * 1 2 3 24 24 H 1.08992 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46825 * 239.99612 * 2 1 3 26 26 H 1.08998 * 109.46578 * 120.00170 * 2 1 3 27 27 H 1.08993 * 109.47317 * 60.00053 * 3 2 1 28 28 H 1.08999 * 109.47088 * 299.99290 * 3 2 1 29 29 H 1.07997 * 125.96916 * 0.04862 * 5 4 3 30 30 H 0.96995 * 119.99839 * 180.02562 * 8 7 6 31 31 H 1.08996 * 109.47272 * 299.99719 * 11 9 8 32 32 H 1.08995 * 109.47136 * 59.99962 * 11 9 8 33 33 H 0.97007 * 120.00078 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2680 2.0856 -0.9211 6 16 5.9725 1.8296 -0.5569 7 6 5.5503 0.8796 0.8004 8 7 6.4579 0.2750 1.6624 9 6 7.7820 0.4188 1.4559 10 8 8.1816 1.0754 0.5177 11 6 8.7659 -0.2362 2.3908 12 16 10.4524 0.1394 1.8515 13 6 11.3674 -0.7238 3.0853 14 1 10.8486 -1.2665 3.8616 15 6 12.7551 -0.7062 3.0595 16 7 13.3874 -0.0451 2.1131 17 14 13.7252 -1.6219 4.3671 18 1 12.7859 -2.2808 5.3098 19 1 14.5802 -2.6495 3.7204 20 1 14.5809 -0.6629 5.1109 21 7 4.2608 0.8054 0.9087 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6768 1.9562 -0.8900 29 1 3.8751 2.6627 -1.7451 30 1 6.1383 -0.2503 2.4125 31 1 8.6143 0.1427 3.4014 32 1 8.6135 -1.3154 2.3807 33 1 14.3572 -0.0331 2.0948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127238478.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:24 Heat of formation + Delta-G solvation = -23.644885 kcal Electronic energy + Delta-G solvation = -16973.236254 eV Core-core repulsion = 14057.927226 eV Total energy + Delta-G solvation = -2915.309027 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59051 -40.53268 -36.53638 -35.14875 -34.59366 -31.89374 -30.40689 -27.91784 -27.70069 -25.22232 -22.85271 -22.47529 -20.99900 -19.69260 -19.23528 -17.87917 -17.73791 -17.13678 -16.88534 -16.19557 -15.92200 -15.55952 -15.38831 -15.19037 -14.55445 -14.25554 -14.03398 -13.69556 -13.24180 -13.14079 -12.98002 -12.92137 -12.63780 -12.19363 -12.10137 -11.77257 -11.74642 -11.54034 -11.16592 -11.05612 -10.76608 -10.33057 -10.22057 -9.26505 -8.68783 -8.36338 -6.14226 -0.28075 0.15150 0.92509 1.08091 1.14626 1.41186 1.41950 1.55395 1.81371 1.90932 2.24389 2.99015 3.18248 3.45866 3.72622 4.03336 4.19586 4.21108 4.27426 4.43114 4.50084 4.62439 4.77645 4.85096 4.88958 5.01809 5.13856 5.35597 5.36957 5.42888 5.49774 5.81755 6.19501 6.65674 6.75118 7.06206 8.72835 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.044598 B = 0.002977 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.682689 B = 9403.629987 C = 9940.827319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.038 4.038 4 C 0.075 3.925 5 C -0.308 4.308 6 S 0.206 5.794 7 C 0.233 3.767 8 N -0.611 5.611 9 C 0.537 3.463 10 O -0.512 6.512 11 C -0.124 4.124 12 S -0.135 6.135 13 C -0.546 4.546 14 H 0.086 0.914 15 C 0.015 3.985 16 N -0.910 5.910 17 Si 0.997 3.003 18 H -0.256 1.256 19 H -0.275 1.275 20 H -0.275 1.275 21 N -0.519 5.519 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.203 0.797 30 H 0.436 0.564 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.198 1.110 -2.572 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.078 4.078 4 C -0.057 4.057 5 C -0.448 4.448 6 S 0.456 5.544 7 C -0.134 4.134 8 N -0.263 5.263 9 C 0.323 3.677 10 O -0.386 6.386 11 C -0.275 4.275 12 S 0.092 5.908 13 C -0.694 4.694 14 H 0.104 0.896 15 C -0.190 4.190 16 N -0.546 5.546 17 Si 0.819 3.181 18 H -0.180 1.180 19 H -0.201 1.201 20 H -0.201 1.201 21 N -0.243 5.243 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.220 0.780 30 H 0.277 0.723 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.548 2.213 -4.147 22.055 hybrid contribution -0.455 -1.437 2.051 2.545 sum -22.003 0.776 -2.096 22.116 Atomic orbital electron populations 1.21750 0.94120 1.02118 1.02493 1.21391 0.96677 0.95608 1.01582 1.20328 0.84780 0.98459 1.04224 1.20316 0.98647 0.95951 0.90746 1.27536 0.97049 1.11888 1.08357 1.85332 1.04207 1.44525 1.20346 1.23587 0.90741 1.01125 0.97943 1.42705 1.03477 1.50647 1.29497 1.20571 0.81618 0.79972 0.85546 1.90664 1.77340 1.39443 1.31188 1.23301 0.97105 1.05133 1.01980 1.85586 0.94601 1.69687 1.40968 1.23235 0.94206 1.37237 1.14673 0.89572 1.26087 0.97968 0.96207 0.98765 1.70167 1.09441 1.41115 1.33906 0.84922 0.77872 0.77757 0.77522 1.18000 1.20080 1.20086 1.66137 1.01931 1.26188 1.30040 0.92246 0.91629 0.92517 0.92865 0.92905 0.89909 0.87980 0.78034 0.72264 0.85852 0.85868 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.11 -1.84 5.83 30.59 0.18 -1.66 16 3 C -0.04 -0.61 5.71 29.85 0.17 -0.44 16 4 C 0.08 1.72 6.07 41.45 0.25 1.98 16 5 C -0.31 -6.72 11.05 66.73 0.74 -5.98 16 6 S 0.21 5.89 20.22 -56.49 -1.14 4.75 16 7 C 0.23 6.81 8.19 179.20 1.47 8.28 16 8 N -0.61 -16.82 5.40 -313.64 -1.69 -18.51 16 9 C 0.54 18.43 7.81 87.66 0.68 19.11 16 10 O -0.51 -21.16 13.33 -3.05 -0.04 -21.20 16 11 C -0.12 -4.46 6.16 71.24 0.44 -4.02 16 12 S -0.14 -7.04 20.57 -56.49 -1.16 -8.20 16 13 C -0.55 -29.67 9.50 67.96 0.65 -29.03 16 14 H 0.09 4.33 7.80 -2.91 -0.02 4.31 16 15 C 0.01 0.81 5.49 84.86 0.47 1.28 16 16 N -0.91 -54.17 13.22 21.65 0.29 -53.88 16 17 Si 1.00 42.32 29.55 68.60 2.03 44.35 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 21 N -0.52 -14.14 10.39 -189.59 -1.97 -16.11 16 22 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 1.03 8.08 -2.39 -0.02 1.01 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.13 8.03 -2.39 -0.02 1.11 16 29 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.44 9.13 8.82 -92.71 -0.82 8.31 16 31 H 0.12 3.89 8.14 -2.40 -0.02 3.87 16 32 H 0.12 3.88 8.14 -2.40 -0.02 3.86 16 33 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -69.87 315.83 2.37 -67.50 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.31 Total: 12.78 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 5.75 Total: -11.47 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -3.38 Total: -88.50 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.04 Total: -21.20 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.30 Total: -3.45 kcal Total: -69.87 2.37 -67.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127238478.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.856 kcal (2) G-P(sol) polarization free energy of solvation -69.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds