Wall clock time and date at job start Tue Mar 31 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47308 * 2 1 4 4 C 1.37097 * 120.00243 * 264.77366 * 3 2 1 5 5 H 1.07993 * 119.99698 * 138.85089 * 4 3 2 6 6 C 1.38945 * 120.00096 * 318.85682 * 4 3 2 7 7 N 1.31420 * 119.99976 * 341.82532 * 6 4 3 8 8 Si 1.86798 * 120.00107 * 161.82870 * 6 4 3 9 9 H 1.48490 * 109.47288 * 89.99693 * 8 6 4 10 10 H 1.48504 * 109.47230 * 209.99745 * 8 6 4 11 11 H 1.48500 * 109.47036 * 329.99348 * 8 6 4 12 12 C 1.34778 * 119.99372 * 84.77447 * 3 2 1 13 13 O 1.21298 * 119.99636 * 180.02562 * 12 3 2 14 14 C 1.50692 * 120.00336 * 359.97438 * 12 3 2 15 15 S 1.81400 * 109.47187 * 179.97438 * 14 12 3 16 16 C 1.81402 * 103.00225 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47095 * 179.97438 * 16 15 14 18 18 C 1.33642 * 122.74822 * 269.73357 * 17 16 15 19 19 S 1.76204 * 107.92172 * 179.97438 * 18 17 16 20 20 C 1.70981 * 90.27997 * 0.27473 * 19 18 17 21 21 N 1.29021 * 110.17164 * 359.84177 * 20 19 18 22 22 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46330 * 299.99245 * 1 2 3 24 24 H 1.08997 * 109.47080 * 59.99375 * 1 2 3 25 25 H 1.09003 * 109.47101 * 240.00247 * 2 1 3 26 26 H 1.08999 * 109.47505 * 120.00929 * 2 1 3 27 27 H 0.97001 * 119.99902 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47194 * 60.00353 * 14 12 3 29 29 H 1.08994 * 109.47358 * 300.00059 * 14 12 3 30 30 H 1.09007 * 109.46934 * 60.00042 * 16 15 14 31 31 H 1.09001 * 109.47072 * 300.00402 * 16 15 14 32 32 H 1.07999 * 126.03958 * 0.03643 * 18 17 16 33 33 H 1.07998 * 124.91136 * 179.83646 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0743 3.0218 -1.3533 6 6 3.0370 1.2843 -2.1606 7 7 3.6790 0.1818 -1.8453 8 14 3.0496 1.9007 -3.9239 9 1 4.2052 2.8121 -4.1214 10 1 3.1655 0.7464 -4.8510 11 1 1.7881 2.6335 -4.2012 12 6 2.1428 2.0519 1.1624 13 8 2.5467 3.1956 1.1624 14 6 1.7790 1.3813 2.4620 15 16 2.0544 2.5341 3.8352 16 6 1.5681 1.5623 5.2877 17 6 1.7434 2.3955 6.5311 18 6 2.8805 2.4165 7.2329 19 16 2.6564 3.5107 8.5958 20 6 1.0533 3.8248 8.0908 21 7 0.7858 3.1581 7.0191 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 4.1596 -0.3117 -2.5282 28 1 2.4003 0.4966 2.6007 29 1 0.7295 1.0881 2.4382 30 1 2.1941 0.6725 5.3557 31 1 0.5236 1.2653 5.1930 32 1 3.7785 1.8616 7.0045 33 1 0.3645 4.4856 8.5959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128907865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:45 Heat of formation + Delta-G solvation = 19.379030 kcal Electronic energy + Delta-G solvation = -17511.341937 eV Core-core repulsion = 14597.898566 eV Total energy + Delta-G solvation = -2913.443370 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91724 -38.49435 -34.99167 -32.21133 -32.10266 -29.51824 -29.24709 -27.83350 -25.00483 -24.62031 -22.31894 -19.92363 -19.19953 -18.23442 -16.83031 -16.16055 -15.96147 -15.76040 -15.11103 -14.77276 -14.42877 -13.97685 -13.80462 -13.45138 -13.23906 -12.96292 -12.80455 -12.43296 -12.26485 -11.78519 -11.51051 -11.35856 -11.09820 -10.99833 -10.43451 -10.36406 -10.16013 -9.84070 -9.70181 -9.62031 -8.94442 -8.88259 -8.51202 -7.47600 -7.23013 -6.35064 -4.03449 0.51057 1.21081 1.52017 1.71972 2.78114 3.05203 3.17202 3.25482 3.30840 3.84312 4.00225 4.14797 4.79286 4.82943 4.91709 4.99034 5.14937 5.37575 5.53506 5.55426 5.60681 5.71807 5.92016 5.95103 6.16109 6.27787 6.45000 6.82471 7.16205 7.55327 7.56429 8.25342 8.46990 9.15084 9.33972 9.95686 10.70286 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.039650 B = 0.003241 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.015347 B = 8638.515319 C = 8892.362450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.436 5.436 4 C -0.308 4.308 5 H 0.089 0.911 6 C 0.039 3.961 7 N -0.871 5.871 8 Si 0.920 3.080 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.477 3.523 13 O -0.560 6.560 14 C -0.116 4.116 15 S -0.167 6.167 16 C -0.043 4.043 17 C 0.087 3.913 18 C -0.235 4.235 19 S 0.115 5.885 20 C 0.023 3.977 21 N -0.457 5.457 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.268 0.732 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.181 0.819 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 -1.554 17.445 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.157 5.157 4 C -0.436 4.436 5 H 0.107 0.893 6 C -0.165 4.165 7 N -0.509 5.509 8 Si 0.746 3.254 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.263 3.737 13 O -0.442 6.442 14 C -0.268 4.268 15 S 0.060 5.940 16 C -0.193 4.193 17 C -0.045 4.045 18 C -0.377 4.377 19 S 0.367 5.633 20 C -0.276 4.276 21 N -0.171 5.171 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.123 0.877 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.199 0.801 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.344 0.303 17.857 18.170 hybrid contribution -0.539 -1.767 -1.541 2.406 sum -3.883 -1.464 16.316 16.835 Atomic orbital electron populations 1.22235 0.98107 1.00437 1.01664 1.21487 0.91692 0.85517 1.03499 1.43365 1.56167 1.11772 1.04355 1.19389 1.35037 0.98708 0.90463 0.89311 1.25443 0.93908 0.96514 1.00674 1.69927 1.29341 1.17520 1.34100 0.86047 0.79077 0.78349 0.81924 1.20191 1.20809 1.19321 1.19531 0.82494 0.87982 0.83694 1.90569 1.49430 1.18181 1.86021 1.23714 1.05093 1.01425 0.96551 1.87682 1.87062 1.22266 0.96997 1.21909 1.05683 0.98991 0.92750 1.19444 0.89030 0.98684 0.97374 1.26875 1.03873 1.07045 0.99922 1.83986 1.12761 1.39338 1.27259 1.28383 0.98821 1.03504 0.96924 1.66069 1.33142 1.07637 1.10246 0.92982 0.93929 0.92201 0.87671 0.93480 0.92214 0.88486 0.88660 0.88695 0.88581 0.80123 0.78288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.15 37.16 0.38 -2.54 16 2 C 0.10 2.17 5.41 -4.04 -0.02 2.15 16 3 N -0.44 -11.07 2.50 -114.81 -0.29 -11.36 16 4 C -0.31 -8.57 8.84 -14.93 -0.13 -8.70 16 5 H 0.09 2.59 7.82 -52.49 -0.41 2.18 16 6 C 0.04 1.04 4.95 -17.47 -0.09 0.95 16 7 N -0.87 -23.42 11.61 55.50 0.64 -22.78 16 8 Si 0.92 20.62 29.59 -169.99 -5.03 15.59 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 C 0.48 11.93 7.61 -10.99 -0.08 11.85 16 13 O -0.56 -16.22 15.78 5.54 0.09 -16.13 16 14 C -0.12 -2.21 5.03 36.00 0.18 -2.03 16 15 S -0.17 -3.10 20.86 -107.50 -2.24 -5.34 16 16 C -0.04 -0.58 6.37 36.01 0.23 -0.35 16 17 C 0.09 1.15 6.00 -84.22 -0.51 0.65 16 18 C -0.24 -2.59 11.13 29.12 0.32 -2.27 16 19 S 0.11 1.01 23.22 -107.50 -2.50 -1.49 16 20 C 0.02 0.23 12.23 51.58 0.63 0.86 16 21 N -0.46 -6.17 10.53 -11.90 -0.13 -6.30 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.70 6.60 -51.93 -0.34 0.36 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.11 2.46 5.76 -51.93 -0.30 2.16 16 26 H 0.05 0.90 6.66 -51.93 -0.35 0.55 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.10 1.67 7.41 -51.92 -0.38 1.29 16 29 H 0.10 1.60 6.54 -51.93 -0.34 1.26 16 30 H 0.09 1.07 8.12 -51.92 -0.42 0.65 16 31 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.20 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 310.87 15.07 4.68 4.68 Total: -1.00 -33.26 310.87 -7.64 -40.91 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.79 Total: 1.65 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 0.91 Total: 0.56 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.23 Total: -40.43 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -4.74 Total: -6.83 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.26 -7.64 -40.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128907865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.288 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds