Wall clock time and date at job start Tue Mar 31 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47308 * 2 1 4 4 C 1.37097 * 120.00243 * 264.77366 * 3 2 1 5 5 H 1.07993 * 119.99698 * 138.85089 * 4 3 2 6 6 C 1.38945 * 120.00096 * 318.85682 * 4 3 2 7 7 N 1.31420 * 119.99976 * 341.82532 * 6 4 3 8 8 Si 1.86798 * 120.00107 * 161.82870 * 6 4 3 9 9 H 1.48490 * 109.47288 * 89.99693 * 8 6 4 10 10 H 1.48504 * 109.47230 * 209.99745 * 8 6 4 11 11 H 1.48500 * 109.47036 * 329.99348 * 8 6 4 12 12 C 1.34778 * 119.99372 * 84.77447 * 3 2 1 13 13 O 1.21298 * 119.99636 * 180.02562 * 12 3 2 14 14 C 1.50692 * 120.00336 * 359.97438 * 12 3 2 15 15 S 1.81400 * 109.47187 * 179.97438 * 14 12 3 16 16 C 1.81402 * 103.00225 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47095 * 179.97438 * 16 15 14 18 18 C 1.33642 * 122.74822 * 269.73357 * 17 16 15 19 19 S 1.76204 * 107.92172 * 179.97438 * 18 17 16 20 20 C 1.70981 * 90.27997 * 0.27473 * 19 18 17 21 21 N 1.29021 * 110.17164 * 359.84177 * 20 19 18 22 22 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46330 * 299.99245 * 1 2 3 24 24 H 1.08997 * 109.47080 * 59.99375 * 1 2 3 25 25 H 1.09003 * 109.47101 * 240.00247 * 2 1 3 26 26 H 1.08999 * 109.47505 * 120.00929 * 2 1 3 27 27 H 0.97001 * 119.99902 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47194 * 60.00353 * 14 12 3 29 29 H 1.08994 * 109.47358 * 300.00059 * 14 12 3 30 30 H 1.09007 * 109.46934 * 60.00042 * 16 15 14 31 31 H 1.09001 * 109.47072 * 300.00402 * 16 15 14 32 32 H 1.07999 * 126.03958 * 0.03643 * 18 17 16 33 33 H 1.07998 * 124.91136 * 179.83646 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0743 3.0218 -1.3533 6 6 3.0370 1.2843 -2.1606 7 7 3.6790 0.1818 -1.8453 8 14 3.0496 1.9007 -3.9239 9 1 4.2052 2.8121 -4.1214 10 1 3.1655 0.7464 -4.8510 11 1 1.7881 2.6335 -4.2012 12 6 2.1428 2.0519 1.1624 13 8 2.5467 3.1956 1.1624 14 6 1.7790 1.3813 2.4620 15 16 2.0544 2.5341 3.8352 16 6 1.5681 1.5623 5.2877 17 6 1.7434 2.3955 6.5311 18 6 2.8805 2.4165 7.2329 19 16 2.6564 3.5107 8.5958 20 6 1.0533 3.8248 8.0908 21 7 0.7858 3.1581 7.0191 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 4.1596 -0.3117 -2.5282 28 1 2.4003 0.4966 2.6007 29 1 0.7295 1.0881 2.4382 30 1 2.1941 0.6725 5.3557 31 1 0.5236 1.2653 5.1930 32 1 3.7785 1.8616 7.0045 33 1 0.3645 4.4856 8.5959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128907865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:44 Heat of formation + Delta-G solvation = -2.347703 kcal Electronic energy + Delta-G solvation = -17512.284079 eV Core-core repulsion = 14597.898566 eV Total energy + Delta-G solvation = -2914.385512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76674 -40.39404 -36.93475 -34.14459 -33.03803 -31.25540 -30.85923 -28.78264 -26.67117 -25.74666 -23.97708 -21.25611 -20.55455 -19.12823 -18.75656 -17.83740 -17.38063 -16.93798 -16.69341 -16.14734 -16.05955 -15.51729 -14.78407 -14.66875 -14.58528 -14.29664 -14.12853 -13.81963 -13.78301 -13.46312 -13.12218 -12.87175 -12.69404 -12.39308 -12.32842 -12.09048 -11.83794 -11.03364 -10.87944 -10.64041 -10.49631 -10.42407 -9.73425 -9.44581 -8.66156 -8.36906 -6.13835 -0.31964 0.42640 0.51526 0.76930 1.37019 1.40808 1.52382 1.54626 1.96881 2.07218 2.29083 2.98108 3.01857 3.21340 3.89712 3.97247 4.06485 4.10951 4.17443 4.42729 4.42802 4.45823 4.60773 4.64194 4.81948 5.01150 5.07105 5.28289 5.43511 5.52424 6.20292 6.49910 6.75019 7.14043 7.38822 8.00156 8.66937 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.039650 B = 0.003241 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.015347 B = 8638.515319 C = 8892.362450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.100 3.900 3 N -0.447 5.447 4 C -0.344 4.344 5 H 0.060 0.940 6 C 0.007 3.993 7 N -0.889 5.889 8 Si 0.982 3.018 9 H -0.280 1.280 10 H -0.265 1.265 11 H -0.267 1.267 12 C 0.460 3.540 13 O -0.613 6.613 14 C -0.095 4.095 15 S -0.235 6.235 16 C -0.018 4.018 17 C 0.057 3.943 18 C -0.244 4.244 19 S 0.175 5.825 20 C 0.016 3.984 21 N -0.499 5.499 22 H 0.088 0.912 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.275 0.725 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.196 0.804 33 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -2.799 18.871 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 N -0.167 5.167 4 C -0.472 4.472 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.526 5.526 8 Si 0.805 3.195 9 H -0.205 1.205 10 H -0.189 1.189 11 H -0.191 1.191 12 C 0.248 3.752 13 O -0.499 6.499 14 C -0.246 4.246 15 S -0.008 6.008 16 C -0.169 4.169 17 C -0.075 4.075 18 C -0.386 4.386 19 S 0.428 5.572 20 C -0.282 4.282 21 N -0.213 5.213 22 H 0.107 0.893 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.213 0.787 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.744 -0.983 19.288 19.673 hybrid contribution -0.362 -1.349 -1.813 2.289 sum -4.107 -2.332 17.475 18.102 Atomic orbital electron populations 1.22128 0.95148 1.02719 1.01352 1.21630 0.94089 0.83183 1.03399 1.43661 1.55942 1.13110 1.03973 1.19341 1.37012 0.98285 0.92598 0.92202 1.26155 0.92925 0.96545 1.03953 1.69981 1.29132 1.18030 1.35421 0.85126 0.78760 0.78246 0.77348 1.20547 1.18888 1.19105 1.20422 0.81660 0.87605 0.85530 1.90523 1.51668 1.20567 1.87176 1.23433 1.06761 1.01009 0.93376 1.87883 1.87788 1.25126 0.99961 1.21876 1.06276 0.98718 0.89983 1.19477 0.90088 1.00055 0.97864 1.27214 1.03698 1.07187 1.00540 1.83790 1.11079 1.37294 1.25064 1.28947 1.00243 1.02860 0.96131 1.66068 1.34264 1.09025 1.11971 0.89303 0.92817 0.93949 0.89965 0.91249 0.91585 0.86428 0.86197 0.86239 0.88066 0.78711 0.75358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 10.15 71.98 0.73 -4.45 16 2 C 0.10 4.18 5.41 86.38 0.47 4.64 16 3 N -0.45 -23.12 2.50 -635.54 -1.59 -24.71 16 4 C -0.34 -19.81 8.84 84.04 0.74 -19.07 16 5 H 0.06 3.70 7.82 -2.91 -0.02 3.68 16 6 C 0.01 0.39 4.95 84.92 0.42 0.81 16 7 N -0.89 -47.84 11.61 21.66 0.25 -47.59 16 8 Si 0.98 42.61 29.59 68.60 2.03 44.64 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 C 0.46 23.52 7.61 87.65 0.67 24.18 16 13 O -0.61 -37.16 15.78 -3.09 -0.05 -37.21 16 14 C -0.09 -3.54 5.03 71.23 0.36 -3.19 16 15 S -0.23 -8.71 20.86 -56.49 -1.18 -9.89 16 16 C -0.02 -0.47 6.37 71.24 0.45 -0.02 16 17 C 0.06 1.44 6.00 41.52 0.25 1.69 16 18 C -0.24 -4.90 11.13 66.78 0.74 -4.16 16 19 S 0.18 2.62 23.22 -56.49 -1.31 1.31 16 20 C 0.02 0.29 12.23 130.66 1.60 1.89 16 21 N -0.50 -12.85 10.53 -191.55 -2.02 -14.86 16 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.05 1.66 6.60 -2.38 -0.02 1.64 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 3.83 5.76 -2.39 -0.01 3.82 16 26 H 0.07 2.53 6.66 -2.39 -0.02 2.51 16 27 H 0.27 13.75 8.31 -92.71 -0.77 12.97 16 28 H 0.12 3.85 7.41 -2.39 -0.02 3.83 16 29 H 0.12 3.82 6.54 -2.39 -0.02 3.80 16 30 H 0.12 2.40 8.12 -2.39 -0.02 2.38 16 31 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.20 3.16 8.06 -2.91 -0.02 3.13 16 33 H 0.23 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -75.53 310.87 3.69 -71.84 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 1.12 Total: 14.13 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.43 Total: 2.34 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -3.36 Total: -87.17 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.05 Total: -37.21 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -6.09 SS G_CDS: -2.49 Total: -8.58 kcal Total: -75.53 3.69 -71.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128907865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.490 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds