Wall clock time and date at job start Tue Mar 31 2020 05:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47059 * 2 1 4 4 S 1.81000 * 109.46989 * 239.99396 * 2 1 3 5 5 C 1.76197 * 99.99965 * 65.00214 * 4 2 1 6 6 N 1.29756 * 124.95626 * 179.97438 * 5 4 2 7 7 C 1.32092 * 116.85976 * 179.97438 * 6 5 4 8 8 C 1.33338 * 114.58567 * 0.02562 * 7 6 5 9 9 S 1.70969 * 124.95068 * 359.69675 * 5 4 2 10 10 C 1.50700 * 109.46599 * 119.99436 * 2 1 3 11 11 O 1.21285 * 119.99857 * 100.00636 * 10 2 1 12 12 N 1.34778 * 120.00271 * 279.99421 * 10 2 1 13 13 C 1.46492 * 119.99879 * 0.02562 * 12 10 2 14 14 C 1.46500 * 119.99940 * 180.02562 * 12 10 2 15 15 C 1.50702 * 109.46822 * 90.00509 * 14 12 10 16 16 H 1.07998 * 120.00133 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99959 * 180.02562 * 15 14 12 18 18 N 1.31518 * 119.99954 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00117 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47195 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47369 * 119.99636 * 19 17 15 22 22 H 1.48501 * 109.47154 * 239.99835 * 19 17 15 23 23 H 1.09004 * 109.46930 * 60.00398 * 1 2 3 24 24 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47067 * 300.00481 * 1 2 3 26 26 H 1.07998 * 122.71178 * 179.97438 * 7 6 5 27 27 H 1.08004 * 125.94693 * 180.02562 * 8 7 6 28 28 H 1.08998 * 109.47652 * 89.99476 * 13 12 10 29 29 H 1.09000 * 109.47049 * 209.99995 * 13 12 10 30 30 H 1.09004 * 109.47087 * 329.99099 * 13 12 10 31 31 H 1.08996 * 109.47482 * 210.00421 * 14 12 10 32 32 H 1.09004 * 109.47377 * 330.00914 * 14 12 10 33 33 H 0.97002 * 119.99848 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8534 -1.4778 5 6 1.5440 0.2420 -2.7257 6 7 1.7183 0.0787 -4.0011 7 6 1.2064 1.0009 -4.7963 8 6 0.5713 1.9882 -4.1641 9 16 0.6531 1.6716 -2.4330 10 6 2.0322 -0.7103 1.2306 11 8 2.4064 -1.8616 1.1560 12 7 2.0658 -0.0662 2.4140 13 6 1.6136 1.3243 2.5042 14 6 2.5546 -0.7566 3.6101 15 6 4.0412 -0.5460 3.7394 16 1 4.5690 0.0435 3.0044 17 6 4.7275 -1.1059 4.7961 18 7 4.0846 -1.8234 5.6914 19 14 6.5700 -0.8443 4.9567 20 1 7.0511 -0.0057 3.8296 21 1 6.8628 -0.1613 6.2424 22 1 7.2611 -2.1583 4.9256 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.2959 0.9591 -5.8718 27 1 0.0869 2.8325 -4.6320 28 1 0.5474 1.3458 2.7296 29 1 2.1627 1.8343 3.2957 30 1 1.7944 1.8275 1.5543 31 1 2.0530 -0.3564 4.4911 32 1 2.3447 -1.8229 3.5255 33 1 4.5674 -2.2170 6.4350 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133229584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:34 Heat of formation + Delta-G solvation = 19.886898 kcal Electronic energy + Delta-G solvation = -17900.415624 eV Core-core repulsion = 14986.994277 eV Total energy + Delta-G solvation = -2913.421348 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53438 -39.28944 -35.04231 -33.60083 -32.39477 -30.48485 -27.92419 -26.14495 -25.72913 -24.68179 -22.63150 -21.08621 -19.03055 -18.58860 -16.96752 -16.69607 -16.52699 -15.63142 -15.20397 -14.87465 -14.81096 -14.32894 -13.91358 -13.77746 -13.46463 -13.18782 -12.44168 -12.32940 -12.22808 -11.95581 -11.89388 -11.42956 -11.28382 -10.92712 -10.69142 -10.51169 -10.22158 -10.11911 -9.70187 -9.64024 -9.42632 -9.11635 -8.49244 -7.83745 -7.60931 -6.10395 -4.15559 0.43026 0.91311 0.96979 1.52211 2.25114 2.62607 3.12043 3.27572 3.35866 3.39665 3.67134 4.39850 4.48157 4.65003 4.68882 4.84895 4.98609 5.24615 5.30669 5.35319 5.43801 5.54826 5.77722 5.85117 5.89276 6.10529 6.87559 7.30679 7.37987 7.43987 7.85063 8.13793 8.17059 8.71311 8.90986 9.49985 10.97836 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.030491 B = 0.004057 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.088352 B = 6899.497635 C = 7143.126167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 H 0.117 0.883 4 S 0.098 5.902 5 C 0.010 3.990 6 N -0.463 5.463 7 C 0.053 3.947 8 C -0.276 4.276 9 S 0.130 5.870 10 C 0.529 3.471 11 O -0.520 6.520 12 N -0.590 5.590 13 C 0.077 3.923 14 C 0.246 3.754 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.282 1.282 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.177 0.823 27 H 0.177 0.823 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 10.604 -14.967 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.276 4.276 3 H 0.135 0.865 4 S 0.332 5.668 5 C -0.375 4.375 6 N -0.181 5.181 7 C -0.100 4.100 8 C -0.419 4.419 9 S 0.379 5.621 10 C 0.312 3.688 11 O -0.397 6.397 12 N -0.322 5.322 13 C -0.067 4.067 14 C 0.127 3.873 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.194 0.806 27 H 0.194 0.806 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.490 8.846 -14.127 19.181 hybrid contribution 0.382 1.556 -0.803 1.792 sum -9.108 10.402 -14.930 20.348 Atomic orbital electron populations 1.22186 0.90467 1.04817 1.03494 1.24089 1.01799 1.04563 0.97145 0.86490 1.86677 1.65609 1.24532 0.90002 1.29173 1.05186 1.02706 1.00485 1.66623 1.22503 1.28560 1.00442 1.21867 0.97023 0.89911 1.01197 1.27043 1.11523 1.06811 0.96497 1.84114 1.51184 1.19862 1.06948 1.19081 0.79669 0.86801 0.83227 1.90742 1.47733 1.16879 1.84344 1.48070 1.61847 1.12656 1.09578 1.21782 0.99155 0.83390 1.02331 1.19398 0.94409 0.93795 0.79704 1.21445 0.92892 1.32894 1.09626 0.92271 1.24930 0.98770 0.94780 0.95516 1.69938 1.36108 1.33753 1.13423 0.86427 0.84964 0.78131 0.77838 1.19731 1.20924 1.20771 0.91152 0.89954 0.89895 0.80576 0.80594 0.93171 0.90180 0.92474 0.94551 0.93538 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.77 37.16 0.33 -1.41 16 2 C -0.14 -2.09 1.76 -27.88 -0.05 -2.14 16 3 H 0.12 1.49 5.91 -51.91 -0.31 1.18 16 4 S 0.10 1.57 21.01 -107.50 -2.26 -0.69 16 5 C 0.01 0.14 7.39 51.89 0.38 0.52 16 6 N -0.46 -6.60 10.61 -14.78 -0.16 -6.76 16 7 C 0.05 0.57 11.34 -19.15 -0.22 0.36 16 8 C -0.28 -2.52 11.34 29.02 0.33 -2.19 16 9 S 0.13 1.34 18.67 -107.50 -2.01 -0.66 16 10 C 0.53 10.53 6.85 -10.98 -0.08 10.45 16 11 O -0.52 -12.69 15.62 5.55 0.09 -12.60 16 12 N -0.59 -11.80 2.86 -182.96 -0.52 -12.32 16 13 C 0.08 1.11 9.56 59.84 0.57 1.68 16 14 C 0.25 6.18 5.16 -5.19 -0.03 6.15 16 15 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 16 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 19 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H 0.07 0.70 4.68 -34.91 -0.16 0.54 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.08 0.83 6.94 -51.93 -0.36 0.47 16 26 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.18 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 29 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.06 0.66 5.94 -51.93 -0.31 0.35 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 304.99 15.07 4.60 4.60 Total: -1.00 -33.25 304.99 -7.30 -40.55 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -3.57 Total: -3.47 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 0.82 Total: 0.09 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.06 Total: -44.39 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -4.26 Total: -1.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.25 -7.30 -40.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133229584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.438 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds