Wall clock time and date at job start Tue Mar 31 2020 05:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47059 * 2 1 4 4 S 1.81000 * 109.46989 * 239.99396 * 2 1 3 5 5 C 1.76197 * 99.99965 * 65.00214 * 4 2 1 6 6 N 1.29756 * 124.95626 * 179.97438 * 5 4 2 7 7 C 1.32092 * 116.85976 * 179.97438 * 6 5 4 8 8 C 1.33338 * 114.58567 * 0.02562 * 7 6 5 9 9 S 1.70969 * 124.95068 * 359.69675 * 5 4 2 10 10 C 1.50700 * 109.46599 * 119.99436 * 2 1 3 11 11 O 1.21285 * 119.99857 * 100.00636 * 10 2 1 12 12 N 1.34778 * 120.00271 * 279.99421 * 10 2 1 13 13 C 1.46492 * 119.99879 * 0.02562 * 12 10 2 14 14 C 1.46500 * 119.99940 * 180.02562 * 12 10 2 15 15 C 1.50702 * 109.46822 * 90.00509 * 14 12 10 16 16 H 1.07998 * 120.00133 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99959 * 180.02562 * 15 14 12 18 18 N 1.31518 * 119.99954 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00117 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47195 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47369 * 119.99636 * 19 17 15 22 22 H 1.48501 * 109.47154 * 239.99835 * 19 17 15 23 23 H 1.09004 * 109.46930 * 60.00398 * 1 2 3 24 24 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47067 * 300.00481 * 1 2 3 26 26 H 1.07998 * 122.71178 * 179.97438 * 7 6 5 27 27 H 1.08004 * 125.94693 * 180.02562 * 8 7 6 28 28 H 1.08998 * 109.47652 * 89.99476 * 13 12 10 29 29 H 1.09000 * 109.47049 * 209.99995 * 13 12 10 30 30 H 1.09004 * 109.47087 * 329.99099 * 13 12 10 31 31 H 1.08996 * 109.47482 * 210.00421 * 14 12 10 32 32 H 1.09004 * 109.47377 * 330.00914 * 14 12 10 33 33 H 0.97002 * 119.99848 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8534 -1.4778 5 6 1.5440 0.2420 -2.7257 6 7 1.7183 0.0787 -4.0011 7 6 1.2064 1.0009 -4.7963 8 6 0.5713 1.9882 -4.1641 9 16 0.6531 1.6716 -2.4330 10 6 2.0322 -0.7103 1.2306 11 8 2.4064 -1.8616 1.1560 12 7 2.0658 -0.0662 2.4140 13 6 1.6136 1.3243 2.5042 14 6 2.5546 -0.7566 3.6101 15 6 4.0412 -0.5460 3.7394 16 1 4.5690 0.0435 3.0044 17 6 4.7275 -1.1059 4.7961 18 7 4.0846 -1.8234 5.6914 19 14 6.5700 -0.8443 4.9567 20 1 7.0511 -0.0057 3.8296 21 1 6.8628 -0.1613 6.2424 22 1 7.2611 -2.1583 4.9256 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.2959 0.9591 -5.8718 27 1 0.0869 2.8325 -4.6320 28 1 0.5474 1.3458 2.7296 29 1 2.1627 1.8343 3.2957 30 1 1.7944 1.8275 1.5543 31 1 2.0530 -0.3564 4.4911 32 1 2.3447 -1.8229 3.5255 33 1 4.5674 -2.2170 6.4350 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133229584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:34 Heat of formation + Delta-G solvation = -3.291500 kcal Electronic energy + Delta-G solvation = -17901.420715 eV Core-core repulsion = 14986.994277 eV Total energy + Delta-G solvation = -2914.426438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89913 -40.39160 -36.72953 -35.14761 -34.13347 -31.33789 -29.76593 -27.52096 -26.64291 -26.15781 -24.32164 -22.08802 -20.07320 -19.85165 -18.74177 -18.25262 -17.84780 -17.03076 -16.51665 -16.32819 -15.88617 -15.77725 -15.08185 -14.87059 -14.66400 -14.40718 -14.08068 -13.68114 -13.54387 -13.36431 -13.10817 -13.07183 -12.80730 -12.55677 -12.24753 -12.23005 -11.71275 -11.57343 -10.99578 -10.85828 -10.65150 -10.59257 -10.16180 -9.52149 -8.71827 -8.23929 -6.37964 -0.43289 -0.13607 0.03013 0.69802 1.19585 1.36483 1.39574 1.50484 1.62731 1.77783 2.16152 2.40024 3.06722 3.36751 3.58638 3.66918 3.70131 4.37422 4.40661 4.46775 4.53259 4.54342 4.71662 4.89644 4.97108 5.05438 5.11959 5.21265 5.51142 5.77436 6.03398 6.56282 6.59006 6.71381 7.17585 7.35161 8.83509 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.030491 B = 0.004057 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.088352 B = 6899.497635 C = 7143.126167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 H 0.141 0.859 4 S 0.020 5.980 5 C -0.018 4.018 6 N -0.491 5.491 7 C 0.029 3.971 8 C -0.250 4.250 9 S 0.179 5.821 10 C 0.521 3.479 11 O -0.578 6.578 12 N -0.595 5.595 13 C 0.068 3.932 14 C 0.260 3.740 15 C -0.544 4.544 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.268 1.268 22 H -0.283 1.283 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.203 0.797 27 H 0.217 0.783 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.033 0.967 32 H 0.001 0.999 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.311 13.959 -16.398 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.247 4.247 3 H 0.159 0.841 4 S 0.252 5.748 5 C -0.402 4.402 6 N -0.211 5.211 7 C -0.123 4.123 8 C -0.392 4.392 9 S 0.428 5.572 10 C 0.306 3.694 11 O -0.458 6.458 12 N -0.326 5.326 13 C -0.073 4.073 14 C 0.139 3.861 15 C -0.583 4.583 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.789 3.211 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.209 1.209 23 H 0.109 0.891 24 H 0.088 0.912 25 H 0.124 0.876 26 H 0.220 0.780 27 H 0.234 0.766 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.510 12.256 -15.571 22.430 hybrid contribution 0.593 0.610 -0.483 0.978 sum -9.917 12.866 -16.053 22.838 Atomic orbital electron populations 1.22235 0.87883 1.04837 1.05543 1.23859 1.03495 1.04074 0.93313 0.84121 1.86902 1.67778 1.27431 0.92643 1.28641 1.07625 1.04174 0.99784 1.66572 1.23041 1.30305 1.01182 1.22301 0.97789 0.89938 1.02299 1.27601 1.09131 1.06749 0.95767 1.83796 1.48936 1.16780 1.07692 1.19899 0.78596 0.86386 0.84478 1.90708 1.50059 1.19624 1.85434 1.48036 1.61576 1.14722 1.08248 1.22148 1.00953 0.80073 1.04158 1.18853 0.93576 0.91879 0.81824 1.21728 0.94276 1.32805 1.09483 0.92830 1.25801 1.03437 0.94422 0.95221 1.70044 1.37965 1.34561 1.14019 0.85410 0.79262 0.77966 0.78441 1.19230 1.19267 1.20939 0.89085 0.91167 0.87592 0.78032 0.76637 0.89817 0.90767 0.89081 0.94869 0.98041 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.77 71.98 0.63 -2.43 16 2 C -0.11 -3.25 1.76 29.85 0.05 -3.20 16 3 H 0.14 3.21 5.91 -2.39 -0.01 3.20 16 4 S 0.02 0.64 21.01 -56.49 -1.19 -0.54 16 5 C -0.02 -0.47 7.39 130.55 0.96 0.50 16 6 N -0.49 -13.46 10.61 -200.69 -2.13 -15.59 16 7 C 0.03 0.54 11.34 83.55 0.95 1.48 16 8 C -0.25 -3.43 11.34 66.71 0.76 -2.68 16 9 S 0.18 3.05 18.67 -56.49 -1.05 1.99 16 10 C 0.52 21.13 6.85 87.66 0.60 21.73 16 11 O -0.58 -29.85 15.62 -3.04 -0.05 -29.90 16 12 N -0.60 -23.88 2.86 -851.14 -2.43 -26.31 16 13 C 0.07 1.80 9.56 127.77 1.22 3.02 16 14 C 0.26 13.55 5.16 85.63 0.44 13.99 16 15 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 16 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 17 C 0.01 0.60 5.46 84.65 0.46 1.06 16 18 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 19 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H 0.09 1.53 4.68 -13.20 -0.06 1.47 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.11 1.75 6.94 -2.39 -0.02 1.73 16 26 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 27 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 28 H 0.08 1.67 7.66 -2.39 -0.02 1.65 16 29 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 30 H 0.09 1.77 5.94 -2.38 -0.01 1.75 16 31 H 0.03 1.73 8.07 -2.39 -0.02 1.71 16 32 H 0.00 0.09 7.42 -2.38 -0.02 0.07 16 33 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -77.33 304.99 2.86 -74.47 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 1.08 Total: 1.28 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 6.32 Total: 2.86 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -4.27 Total: -96.89 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.05 Total: -29.90 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.24 Total: 1.45 kcal Total: -77.33 2.86 -74.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133229584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.177 kcal (2) G-P(sol) polarization free energy of solvation -77.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds