Wall clock time and date at job start Tue Mar 31 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47264 * 2 1 4 4 C 1.50697 * 109.46963 * 120.00321 * 2 1 3 5 5 H 1.08004 * 120.00102 * 119.99917 * 4 2 1 6 6 C 1.37876 * 119.99912 * 299.99926 * 4 2 1 7 7 N 1.31518 * 120.00193 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00069 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47084 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47159 * 300.00188 * 8 6 4 11 11 H 1.48510 * 109.46895 * 59.99961 * 8 6 4 12 12 N 1.46507 * 109.47264 * 239.99905 * 2 1 3 13 13 C 1.34783 * 119.99530 * 85.00081 * 12 2 1 14 14 O 1.21586 * 119.99852 * 0.02562 * 13 12 2 15 15 N 1.34770 * 119.99587 * 179.97438 * 13 12 2 16 16 C 1.40123 * 120.00099 * 175.52308 * 15 13 12 17 17 C 1.38817 * 120.04718 * 34.68378 * 16 15 13 18 18 C 1.38128 * 119.96921 * 179.70678 * 17 16 15 19 19 C 1.38486 * 120.06333 * 0.59223 * 18 17 16 20 20 F 1.35098 * 119.95233 * 179.70144 * 19 18 17 21 21 C 1.38452 * 120.09530 * 359.68491 * 19 18 17 22 22 C 1.38226 * 120.03086 * 0.02562 * 21 19 18 23 23 Cl 1.73606 * 120.03438 * 179.97438 * 22 21 19 24 24 H 1.09006 * 109.46586 * 59.99631 * 1 2 3 25 25 H 1.08995 * 109.46777 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46724 * 300.00014 * 1 2 3 27 27 H 0.97001 * 120.00042 * 180.02562 * 7 6 4 28 28 H 0.96995 * 120.00333 * 265.00390 * 12 2 1 29 29 H 0.97005 * 120.00446 * 355.51759 * 15 13 12 30 30 H 1.08007 * 120.01859 * 0.02562 * 17 16 15 31 31 H 1.07998 * 119.96901 * 180.29876 * 18 17 16 32 32 H 1.07993 * 119.98265 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3212 -1.1205 4.0079 9 1 1.8258 -0.4208 5.2204 10 1 1.8257 -2.5204 4.0076 11 1 3.8063 -1.1212 4.0082 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8584 1.1616 -2.4116 15 7 2.5969 -0.6534 -3.4574 16 6 2.6421 0.0196 -4.6857 17 6 2.9379 1.3753 -4.7250 18 6 2.9880 2.0357 -5.9371 19 6 2.7314 1.3494 -7.1122 20 9 2.7751 1.9990 -8.2960 21 6 2.4304 -0.0015 -7.0757 22 6 2.3851 -0.6676 -5.8654 23 17 2.0070 -2.3614 -5.8194 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 0.7086 1.1611 3.4844 28 1 2.2491 -1.6318 -1.1527 29 1 2.8894 -1.5764 -3.3992 30 1 3.1339 1.9123 -3.8086 31 1 3.2229 3.0894 -5.9680 32 1 2.2310 -0.5350 -7.9932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153376063.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:04 Heat of formation + Delta-G solvation = -74.015479 kcal Electronic energy + Delta-G solvation = -19673.509884 eV Core-core repulsion = 16187.759741 eV Total energy + Delta-G solvation = -3485.750143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.93146 -41.71597 -39.78750 -37.57361 -36.89719 -35.68905 -34.32775 -32.05565 -31.26005 -29.48265 -27.31814 -24.70015 -24.06854 -22.77748 -21.62715 -19.97142 -19.15292 -18.65442 -17.93798 -17.40446 -16.91284 -16.67107 -16.26454 -15.96922 -15.81385 -15.18766 -14.88067 -14.61280 -14.46319 -14.35288 -14.00758 -13.70789 -12.99403 -12.90921 -12.75397 -12.58406 -12.41361 -12.25501 -12.15299 -12.14064 -11.45325 -11.11735 -11.09888 -10.58822 -10.05355 -9.87178 -9.10029 -8.16252 -6.33396 -0.15227 0.00638 0.88728 1.46806 1.48886 1.55917 1.63407 2.03066 2.42200 2.47594 3.14529 3.19942 3.32872 3.59162 3.88617 4.09370 4.18225 4.53400 4.75188 4.84595 4.94258 4.97638 5.09006 5.10675 5.31408 5.39028 5.59391 5.63070 5.72627 5.82348 6.09460 6.15921 6.73476 7.13801 7.34567 7.59980 8.89844 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.029607 B = 0.003688 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.490079 B = 7589.660323 C = 8162.907736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 H 0.005 0.995 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.287 1.287 10 H -0.265 1.265 11 H -0.271 1.271 12 N -0.711 5.711 13 C 0.697 3.303 14 O -0.617 6.617 15 N -0.675 5.675 16 C 0.163 3.837 17 C -0.099 4.099 18 C -0.121 4.121 19 C 0.086 3.914 20 F -0.135 7.135 21 C -0.118 4.118 22 C -0.045 4.045 23 Cl -0.042 7.042 24 H 0.012 0.988 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.266 0.734 28 H 0.404 0.596 29 H 0.420 0.580 30 H 0.140 0.860 31 H 0.162 0.838 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -5.389 -17.892 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.023 0.977 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.213 1.213 10 H -0.190 1.190 11 H -0.196 1.196 12 N -0.363 5.363 13 C 0.397 3.603 14 O -0.497 6.497 15 N -0.324 5.324 16 C 0.066 3.934 17 C -0.120 4.120 18 C -0.141 4.141 19 C 0.065 3.935 20 F -0.113 7.113 21 C -0.137 4.137 22 C -0.075 4.075 23 Cl -0.013 7.013 24 H 0.031 0.969 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.239 0.761 29 H 0.259 0.741 30 H 0.158 0.842 31 H 0.179 0.821 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.196 -4.385 -17.701 18.713 hybrid contribution 0.269 -0.923 0.876 1.301 sum 4.464 -5.309 -16.824 18.198 Atomic orbital electron populations 1.21928 0.98388 0.99424 0.99622 1.18291 0.90884 0.91868 0.80425 0.97701 1.21497 1.32761 1.13706 0.90640 0.90756 1.25753 0.94840 0.95557 1.02180 1.70040 1.36812 1.23847 1.24703 0.85406 0.78642 0.78670 0.77659 1.21295 1.18986 1.19578 1.45479 1.68477 1.14026 1.08346 1.16148 0.78275 0.84982 0.80888 1.90852 1.58532 1.15760 1.84600 1.42517 1.67449 1.16987 1.05434 1.17467 0.99610 0.92487 0.83832 1.21182 0.98750 0.92954 0.99083 1.21323 1.00603 1.02216 0.89940 1.17408 1.04449 0.90442 0.81155 1.91514 1.94208 1.81182 1.44428 1.20940 1.01833 0.92848 0.98101 1.20377 1.06926 0.87272 0.92956 1.98380 1.92686 1.11617 1.98661 0.96910 0.94217 0.91346 0.92516 0.76117 0.74134 0.84206 0.82088 0.81023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.69 9.26 71.98 0.67 -6.02 16 2 C 0.29 14.50 2.56 44.24 0.11 14.61 16 3 H 0.01 0.30 7.58 -2.39 -0.02 0.28 16 4 C -0.55 -28.06 8.73 25.60 0.22 -27.84 16 5 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -51.35 11.32 21.45 0.24 -51.11 16 8 Si 0.97 40.94 29.54 68.60 2.03 42.96 16 9 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 12 N -0.71 -28.33 5.07 -461.40 -2.34 -30.67 16 13 C 0.70 26.98 8.38 179.05 1.50 28.47 16 14 O -0.62 -28.72 13.42 -3.99 -0.05 -28.78 16 15 N -0.67 -19.49 5.06 -317.03 -1.60 -21.09 16 16 C 0.16 4.48 6.31 38.12 0.24 4.72 16 17 C -0.10 -2.80 8.70 22.38 0.19 -2.61 16 18 C -0.12 -2.76 10.02 22.30 0.22 -2.54 16 19 C 0.09 1.81 7.30 22.38 0.16 1.97 16 20 F -0.13 -2.79 17.26 44.97 0.78 -2.01 16 21 C -0.12 -2.28 9.80 22.32 0.22 -2.06 16 22 C -0.05 -1.01 6.34 22.43 0.14 -0.87 16 23 Cl -0.04 -0.83 27.96 -2.72 -0.08 -0.90 16 24 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 27 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.40 13.32 8.56 -92.71 -0.79 12.53 16 29 H 0.42 9.59 8.10 -92.70 -0.75 8.84 16 30 H 0.14 4.70 6.19 -2.91 -0.02 4.68 16 31 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -62.26 298.58 2.75 -59.50 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -0.35 Total: 22.90 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 4.13 Total: 9.19 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -3.70 Total: -102.87 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.05 Total: -28.78 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.90 kcal Total: -62.26 2.75 -59.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153376063.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.512 kcal (2) G-P(sol) polarization free energy of solvation -62.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds