Wall clock time and date at job start Tue Mar 31 2020 05:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33642 * 126.03586 * 2 1 4 4 N 1.31773 * 114.50000 * 179.97438 * 3 2 1 5 5 C 1.29028 * 117.12700 * 359.97438 * 4 3 2 6 6 C 1.50697 * 124.91575 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.46984 * 195.02434 * 6 5 4 8 8 C 1.53000 * 109.46811 * 75.03297 * 6 5 4 9 9 N 1.46499 * 109.47763 * 315.03159 * 6 5 4 10 10 C 1.34777 * 120.00199 * 205.00186 * 9 6 5 11 11 O 1.21283 * 119.99750 * 359.97438 * 10 9 6 12 12 C 1.50702 * 119.99928 * 180.27479 * 10 9 6 13 13 S 1.80999 * 109.46903 * 179.72354 * 12 10 9 14 14 C 1.76200 * 99.99730 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00351 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.00095 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00384 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47506 * 89.99666 * 18 16 14 20 20 H 1.48498 * 109.47217 * 210.00061 * 18 16 14 21 21 H 1.48502 * 109.46767 * 329.99807 * 18 16 14 22 22 S 1.70972 * 110.16676 * 0.23355 * 5 4 3 23 23 H 1.09000 * 109.47084 * 90.02934 * 1 2 3 24 24 H 1.09004 * 109.47077 * 210.02362 * 1 2 3 25 25 H 1.08994 * 109.47659 * 330.02833 * 1 2 3 26 26 H 1.08006 * 122.74475 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47598 * 59.99720 * 8 6 5 28 28 H 1.09005 * 109.47473 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.46925 * 299.99315 * 8 6 5 30 30 H 0.97000 * 119.99484 * 24.99284 * 9 6 5 31 31 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 32 32 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 33 33 H 0.97002 * 120.00288 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5843 0.8172 0.0005 5 6 3.9311 -0.4256 0.0015 6 6 5.3532 -0.9243 0.0017 7 1 5.3675 -1.9814 -0.2639 8 6 5.9579 -0.7404 1.3950 9 7 6.1374 -0.1647 -0.9751 10 6 7.2412 -0.7098 -1.5236 11 8 7.5856 -1.8291 -1.2081 12 6 8.0513 0.0741 -2.5238 13 16 9.4644 -0.9184 -3.0661 14 6 10.2132 0.2072 -4.1961 15 1 9.7716 1.1785 -4.3633 16 6 11.3713 -0.1539 -4.8705 17 7 11.9105 -1.3371 -4.6656 18 14 12.1656 1.0397 -6.0680 19 1 13.1477 1.8867 -5.3445 20 1 12.8608 0.2791 -7.1372 21 1 11.1197 1.9023 -6.6741 22 16 2.5437 -1.4247 -0.0047 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5133 26 1 1.9023 2.0875 0.0004 27 1 5.3746 -1.3056 2.1219 28 1 6.9864 -1.1015 1.3954 29 1 5.9436 0.3167 1.6606 30 1 5.8620 0.7306 -1.2272 31 1 7.4281 0.3193 -3.3839 32 1 8.4094 0.9935 -2.0607 33 1 12.7197 -1.5897 -5.1373 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177858988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:09 Heat of formation + Delta-G solvation = -25.498331 kcal Electronic energy + Delta-G solvation = -17150.904584 eV Core-core repulsion = 14235.515186 eV Total energy + Delta-G solvation = -2915.389399 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21257 -40.35220 -36.73390 -34.58618 -33.62915 -32.38404 -30.01789 -28.05046 -27.65963 -25.63466 -23.72099 -21.91595 -20.31773 -19.88430 -19.09996 -17.84182 -17.34244 -16.87952 -16.53676 -16.09372 -15.90540 -15.74224 -14.96279 -14.76135 -14.51093 -14.36992 -14.01400 -13.73784 -13.58608 -13.33303 -13.16821 -13.10669 -12.89201 -12.60679 -12.50109 -12.10765 -11.74052 -11.14376 -11.07813 -10.75635 -10.29496 -10.25706 -10.24192 -9.77817 -8.66676 -8.34851 -6.12757 -0.39838 0.23379 0.69658 1.26187 1.42562 1.46075 1.54085 1.56969 1.77730 2.25913 2.29862 2.92882 2.99248 3.31179 3.73468 3.95142 4.00950 4.07942 4.22908 4.26207 4.28557 4.48952 4.61750 4.73129 4.78462 4.88959 5.02401 5.14099 5.26727 5.32626 5.41974 6.19851 6.39795 6.67357 7.06488 7.13944 8.74376 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.035490 B = 0.003052 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.755538 B = 9172.741593 C = 9535.466182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.212 4.212 3 C 0.013 3.987 4 N -0.477 5.477 5 C 0.009 3.991 6 C 0.224 3.776 7 H 0.096 0.904 8 C -0.149 4.149 9 N -0.705 5.705 10 C 0.540 3.460 11 O -0.556 6.556 12 C -0.130 4.130 13 S -0.142 6.142 14 C -0.548 4.548 15 H 0.081 0.919 16 C 0.014 3.986 17 N -0.911 5.911 18 Si 0.999 3.001 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.259 1.259 22 S 0.157 5.843 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.197 0.803 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.415 0.585 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.933 5.185 10.919 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.333 4.333 3 C -0.137 4.137 4 N -0.192 5.192 5 C -0.268 4.268 6 C 0.116 3.884 7 H 0.114 0.886 8 C -0.209 4.209 9 N -0.360 5.360 10 C 0.326 3.674 11 O -0.434 6.434 12 C -0.281 4.281 13 S 0.085 5.915 14 C -0.696 4.696 15 H 0.100 0.900 16 C -0.191 4.191 17 N -0.547 5.547 18 Si 0.820 3.180 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.183 1.183 22 S 0.412 5.588 23 H 0.106 0.894 24 H 0.099 0.901 25 H 0.117 0.883 26 H 0.214 0.786 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.252 0.748 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.985 2.527 11.405 26.678 hybrid contribution 0.057 2.889 -1.146 3.108 sum -23.928 5.416 10.259 26.592 Atomic orbital electron populations 1.20415 0.84196 1.04857 1.04132 1.26549 1.03244 0.94262 1.09281 1.22082 0.86152 1.01531 1.03962 1.66126 1.19343 1.18684 1.15022 1.26755 1.00571 0.92576 1.06869 1.19358 0.82455 0.95972 0.90619 0.88584 1.22098 1.01332 1.03333 0.94107 1.45809 1.26127 1.20223 1.43860 1.20032 0.80581 0.86088 0.80687 1.90688 1.69556 1.20684 1.62445 1.23366 1.00560 1.03188 1.01022 1.85500 1.26247 1.24907 1.54880 1.23207 1.14036 1.03613 1.28715 0.90044 1.26121 0.96515 0.97738 0.98727 1.70178 1.20792 1.21408 1.42326 0.84952 0.78275 0.77579 0.77162 1.19289 1.20195 1.18304 1.84015 0.97043 1.10831 1.66959 0.89360 0.90073 0.88307 0.78616 0.89513 0.92365 0.91361 0.74795 0.87472 0.87255 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.42 71.24 0.74 0.22 16 2 C -0.21 -2.97 6.60 24.64 0.16 -2.81 16 3 C 0.01 0.22 11.25 83.66 0.94 1.16 16 4 N -0.48 -10.44 10.16 -191.45 -1.94 -12.38 16 5 C 0.01 0.20 6.21 88.52 0.55 0.75 16 6 C 0.22 5.71 3.07 44.24 0.14 5.84 16 7 H 0.10 2.64 7.58 -2.38 -0.02 2.62 16 8 C -0.15 -3.46 9.47 71.98 0.68 -2.78 16 9 N -0.71 -20.38 5.07 -446.09 -2.26 -22.64 16 10 C 0.54 20.59 7.81 87.66 0.68 21.27 16 11 O -0.56 -25.52 15.53 -3.04 -0.05 -25.57 16 12 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 13 S -0.14 -7.98 20.57 -56.49 -1.16 -9.14 16 14 C -0.55 -31.64 9.50 67.95 0.65 -31.00 16 15 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 16 C 0.01 0.79 5.49 84.86 0.47 1.26 16 17 N -0.91 -56.20 13.22 21.65 0.29 -55.91 16 18 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 S 0.16 2.68 23.18 -56.49 -1.31 1.37 16 23 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.20 2.22 8.06 -2.91 -0.02 2.19 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.42 10.53 8.29 -92.71 -0.77 9.77 16 31 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 32 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -74.74 319.75 1.40 -73.35 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.36 Total: 15.91 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 5.45 Total: -10.99 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -3.92 Total: -90.93 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -2.47 Total: -7.77 kcal Total: -74.74 1.40 -73.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177858988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.848 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds