Wall clock time and date at job start Tue Mar 31 2020 05:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46904 * 2 1 4 4 C 1.50696 * 109.47609 * 120.00027 * 2 1 3 5 5 H 1.08007 * 120.00025 * 120.00152 * 4 2 1 6 6 C 1.37871 * 120.00053 * 300.00364 * 4 2 1 7 7 N 1.31523 * 120.00177 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00281 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47052 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47303 * 119.99956 * 8 6 4 11 11 H 1.48505 * 109.47226 * 240.00336 * 8 6 4 12 12 N 1.46506 * 109.47153 * 240.00634 * 2 1 3 13 13 C 1.34771 * 120.00454 * 84.99598 * 12 2 1 14 14 O 1.21283 * 119.99625 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00300 * 180.02562 * 13 12 2 16 16 S 1.81396 * 109.47078 * 180.02562 * 15 13 12 17 17 C 1.81406 * 102.99751 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47019 * 179.97438 * 17 16 15 19 19 C 1.33635 * 122.75319 * 269.73321 * 18 17 16 20 20 S 1.76192 * 107.92524 * 179.97438 * 19 18 17 21 21 C 1.70976 * 90.28427 * 0.27803 * 20 19 18 22 22 N 1.29027 * 110.16712 * 359.83656 * 21 20 19 23 23 H 1.09003 * 109.47170 * 299.99506 * 1 2 3 24 24 H 1.08997 * 109.47207 * 59.99952 * 1 2 3 25 25 H 1.09002 * 109.46904 * 180.02562 * 1 2 3 26 26 H 0.96993 * 119.99982 * 179.97438 * 7 6 4 27 27 H 0.96998 * 119.99222 * 264.99212 * 12 2 1 28 28 H 1.08993 * 109.47274 * 59.99800 * 15 13 12 29 29 H 1.09005 * 109.46975 * 299.99910 * 15 13 12 30 30 H 1.08994 * 109.47085 * 59.99990 * 17 16 15 31 31 H 1.08997 * 109.46976 * 299.99569 * 17 16 15 32 32 H 1.08001 * 126.03202 * 0.03585 * 19 18 17 33 33 H 1.08001 * 124.91761 * 179.84059 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4826 7 7 0.9435 0.8302 2.6034 8 14 2.3216 -1.1204 4.0079 9 1 3.1457 -2.2877 3.6037 10 1 3.1467 -0.1874 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0183 -0.6905 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6488 -0.7286 -3.5878 16 16 2.7106 0.4373 -4.9761 17 6 3.3282 -0.5858 -6.3409 18 6 3.4366 0.2530 -7.5883 19 6 2.4348 0.3799 -8.4636 20 16 2.9799 1.4390 -9.7619 21 6 4.5035 1.5994 -9.0028 22 7 4.5294 0.9164 -7.9085 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.7089 1.1612 3.4844 27 1 2.2491 -1.6316 -1.1527 28 1 1.9760 -1.5504 -3.8327 29 1 3.6480 -1.1211 -3.3987 30 1 2.6384 -1.4111 -6.5173 31 1 4.3102 -0.9818 -6.0825 32 1 1.4625 -0.0841 -8.3879 33 1 5.3253 2.1873 -9.3841 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178529298.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:22 Heat of formation + Delta-G solvation = 7.381556 kcal Electronic energy + Delta-G solvation = -16996.875159 eV Core-core repulsion = 14082.911540 eV Total energy + Delta-G solvation = -2913.963620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.05564 -38.81119 -34.82867 -32.47572 -32.28248 -30.34670 -28.27247 -27.77895 -25.26826 -25.08486 -21.40594 -19.97976 -19.49157 -18.50321 -17.24237 -16.28255 -15.97693 -15.85772 -15.25563 -15.06720 -14.79494 -14.08626 -13.94674 -13.60495 -13.39294 -13.16222 -12.65935 -12.50002 -12.33143 -11.69399 -11.63007 -11.09268 -10.96382 -10.74190 -10.31966 -10.25714 -10.02195 -9.95098 -9.75437 -9.17396 -9.06861 -9.03668 -8.57620 -7.98063 -7.52457 -6.13862 -4.23441 0.36747 1.08175 1.35774 1.47233 2.47735 2.83526 3.22797 3.28230 3.30902 3.33381 3.85688 4.03812 4.36074 4.64586 4.74330 5.00638 5.17182 5.18574 5.19635 5.26822 5.36936 5.50655 5.77273 6.80709 6.94766 7.12917 7.41390 7.41851 7.52071 7.66678 7.89015 8.12910 8.59433 8.74812 9.05130 9.44003 10.92216 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.054750 B = 0.002609 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.296725 B =10731.386014 C =10889.205890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.704 5.704 13 C 0.517 3.483 14 O -0.534 6.534 15 C -0.130 4.130 16 S -0.159 6.159 17 C -0.041 4.041 18 C 0.083 3.917 19 C -0.236 4.236 20 S 0.121 5.879 21 C 0.024 3.976 22 N -0.458 5.458 23 H 0.091 0.909 24 H 0.015 0.985 25 H 0.026 0.974 26 H 0.264 0.736 27 H 0.389 0.611 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.182 0.818 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -4.194 -23.271 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.353 5.353 13 C 0.300 3.700 14 O -0.412 6.412 15 C -0.282 4.282 16 S 0.068 5.932 17 C -0.191 4.191 18 C -0.049 4.049 19 C -0.378 4.378 20 S 0.373 5.627 21 C -0.275 4.275 22 N -0.171 5.171 23 H 0.109 0.891 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.199 0.801 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.527 -1.740 -23.706 24.029 hybrid contribution 0.716 -2.765 1.665 3.306 sum 4.243 -4.506 -22.041 22.893 Atomic orbital electron populations 1.22083 0.98361 0.99147 1.01021 1.18789 0.91092 0.94049 0.79733 0.93249 1.21240 1.32478 1.13255 0.90265 0.91993 1.24899 0.94805 0.94957 0.99097 1.69915 1.35848 1.22417 1.23834 0.86379 0.78598 0.79504 0.82522 1.19746 1.20836 1.20857 1.46460 1.65129 1.13569 1.10133 1.19481 0.79243 0.87409 0.83912 1.90709 1.50506 1.15543 1.84460 1.23650 1.05919 1.01917 0.96733 1.87819 1.86145 1.16940 1.02252 1.21911 1.05504 0.98703 0.93002 1.19404 0.88766 0.99888 0.96860 1.26883 1.05160 1.06968 0.98757 1.84042 1.10349 1.42882 1.25431 1.28408 1.01459 1.02836 0.94817 1.66075 1.27448 1.08429 1.15180 0.89067 0.96562 0.95440 0.92575 0.77829 0.87721 0.87605 0.88526 0.88320 0.80112 0.78190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.97 11.32 55.43 0.63 -24.35 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.70 -14.57 5.07 -54.93 -0.28 -14.85 16 13 C 0.52 10.41 7.81 -10.99 -0.09 10.32 16 14 O -0.53 -13.20 15.53 5.56 0.09 -13.11 16 15 C -0.13 -1.87 6.42 36.00 0.23 -1.64 16 16 S -0.16 -2.43 20.86 -107.50 -2.24 -4.67 16 17 C -0.04 -0.44 6.37 36.01 0.23 -0.22 16 18 C 0.08 0.95 6.00 -84.22 -0.51 0.44 16 19 C -0.24 -2.18 11.13 29.12 0.32 -1.85 16 20 S 0.12 0.90 23.22 -107.50 -2.50 -1.60 16 21 C 0.02 0.21 12.23 51.58 0.63 0.84 16 22 N -0.46 -5.47 10.53 -11.89 -0.13 -5.60 16 23 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.39 6.78 8.54 -40.82 -0.35 6.43 16 28 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.11 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.10 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -33.27 316.38 -8.06 -41.33 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -3.98 Total: 4.08 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 0.60 Total: -1.62 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.22 Total: -44.79 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -4.74 Total: -6.27 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.27 -8.06 -41.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178529298.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.714 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds