Wall clock time and date at job start Tue Mar 31 2020 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47270 * 2 1 4 4 C 1.53001 * 109.46863 * 120.00140 * 2 1 3 5 5 N 1.46495 * 109.47303 * 294.99964 * 4 2 1 6 6 C 1.34775 * 120.00210 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99887 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00116 * 179.97438 * 6 5 4 9 9 S 1.80996 * 109.47141 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00118 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99943 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00103 * 179.97438 * 10 9 8 13 13 N 1.31636 * 120.00061 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00186 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46565 * 60.00482 * 14 12 10 16 16 H 1.48497 * 109.47021 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47024 * 300.00746 * 14 12 10 18 18 C 1.50701 * 109.47052 * 240.00227 * 2 1 3 19 19 N 1.29022 * 124.91373 * 299.69734 * 18 2 1 20 20 C 1.31789 * 117.12256 * 180.26689 * 19 18 2 21 21 C 1.33637 * 114.50004 * 359.97438 * 20 19 18 22 22 S 1.70978 * 124.91683 * 120.00098 * 18 2 1 23 23 H 1.09001 * 109.47205 * 59.99632 * 1 2 3 24 24 H 1.08998 * 109.47270 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47298 * 299.99996 * 1 2 3 26 26 H 1.09000 * 109.47257 * 55.00261 * 4 2 1 27 27 H 1.09001 * 109.46952 * 174.99870 * 4 2 1 28 28 H 0.97004 * 119.99833 * 0.02562 * 5 4 2 29 29 H 1.09000 * 109.47522 * 300.00365 * 8 6 5 30 30 H 1.09001 * 109.46972 * 60.00148 * 8 6 5 31 31 H 0.96993 * 120.00135 * 180.02562 * 13 12 10 32 32 H 1.08002 * 122.74893 * 180.02562 * 20 19 18 33 33 H 1.07998 * 126.03336 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0352 2.4424 6 6 1.9964 -0.4132 3.6659 7 8 2.6271 -1.4429 3.7791 8 6 1.5982 0.3654 4.8932 9 16 2.2026 -0.4872 6.3710 10 6 1.6129 0.6081 7.6189 11 1 1.0595 1.4934 7.3427 12 6 1.8588 0.3325 8.9568 13 7 2.5329 -0.7469 9.2935 14 14 1.2343 1.4941 10.2798 15 1 -0.2456 1.5867 10.1987 16 1 1.6259 0.9785 11.6162 17 1 1.8265 2.8406 10.0760 18 6 2.0323 -0.7104 -1.2305 19 7 1.7843 -1.9417 -1.5253 20 6 2.3074 -2.4096 -2.6407 21 6 3.0369 -1.5234 -3.3251 22 16 3.0195 -0.0033 -2.4343 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6054 -1.7199 1.2951 27 1 3.1263 -0.7995 1.2056 28 1 1.1482 0.8590 2.3518 29 1 2.0328 1.3639 4.8470 30 1 0.5119 0.4436 4.9372 31 1 2.7043 -0.9397 10.2285 32 1 2.1581 -3.4258 -2.9748 33 1 3.5477 -1.7069 -4.2588 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183502690.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:30 Heat of formation + Delta-G solvation = -1.341506 kcal Electronic energy + Delta-G solvation = -17017.108246 eV Core-core repulsion = 14102.766366 eV Total energy + Delta-G solvation = -2914.341880 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16147 -39.12821 -36.23866 -33.01514 -32.41180 -29.96092 -29.20902 -26.55566 -25.57763 -25.17438 -22.27235 -20.47023 -19.66297 -18.35681 -17.75823 -16.35823 -16.06556 -15.71997 -15.48678 -14.79284 -14.77467 -14.40781 -14.22124 -13.74799 -13.55677 -13.24854 -12.89162 -12.55903 -12.20478 -11.93999 -11.84905 -11.48922 -11.35296 -11.03101 -11.02618 -10.76035 -9.92311 -9.81040 -9.72813 -9.41541 -9.20695 -9.04958 -8.87878 -8.21983 -6.48315 -6.19942 -3.90582 0.37086 1.01457 1.40999 2.52948 3.04109 3.12410 3.24584 3.28486 3.31744 3.63947 3.89101 4.21960 4.50903 4.56061 4.70168 4.86501 5.03869 5.14969 5.16426 5.16787 5.45352 5.52118 5.63125 5.66843 5.78729 5.90886 5.93696 6.02931 6.15275 6.59354 7.43273 7.60609 7.70347 8.36486 8.63068 9.25070 10.87444 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.049562 B = 0.002669 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.813186 B =10486.845875 C =10688.868687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.025 4.025 3 H 0.096 0.904 4 C 0.136 3.864 5 N -0.738 5.738 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.061 3.939 19 N -0.466 5.466 20 C 0.042 3.958 21 C -0.263 4.263 22 S 0.120 5.880 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.398 0.602 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.269 0.731 32 H 0.177 0.823 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 3.932 -25.810 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.047 4.047 3 H 0.114 0.886 4 C 0.010 3.990 5 N -0.394 5.394 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.218 4.218 19 N -0.180 5.180 20 C -0.109 4.109 21 C -0.402 4.402 22 S 0.375 5.625 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.232 0.768 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.194 0.806 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.951 2.750 -25.291 25.458 hybrid contribution -1.380 1.367 0.173 1.950 sum -2.331 4.117 -25.118 25.560 Atomic orbital electron populations 1.21830 0.92047 1.03759 1.02304 1.20057 0.97693 0.98275 0.88680 0.88565 1.21184 1.00109 0.95766 0.81924 1.45974 1.59809 1.28153 1.05452 1.20304 0.78714 0.85497 0.83681 1.90714 1.38240 1.23836 1.86128 1.23528 1.04852 1.03427 0.98544 1.85423 1.72721 1.33051 0.92154 1.22828 1.41515 1.11275 0.92793 0.90967 1.24996 0.94870 0.95802 0.97934 1.70009 1.37416 1.24621 1.18265 0.86223 0.79181 0.80333 0.79748 1.19939 1.20829 1.19950 1.26872 1.00340 0.93462 1.01134 1.66210 1.23057 1.11512 1.17203 1.21862 0.96898 1.01631 0.90524 1.27103 1.09736 0.96159 1.07213 1.84072 1.47221 1.14935 1.16237 0.92262 0.91023 0.91154 0.90299 0.91545 0.76809 0.89184 0.89155 0.92129 0.80626 0.80545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.04 37.16 0.34 -0.80 16 2 C -0.02 -0.22 2.86 -91.77 -0.26 -0.48 16 3 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 4 C 0.14 1.68 5.04 -4.04 -0.02 1.66 16 5 N -0.74 -9.73 5.28 -60.30 -0.32 -10.05 16 6 C 0.53 9.98 7.85 -10.99 -0.09 9.89 16 7 O -0.52 -11.96 15.86 5.56 0.09 -11.88 16 8 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 14 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C 0.06 0.59 5.91 -13.46 -0.08 0.51 16 19 N -0.47 -5.20 10.53 -11.86 -0.12 -5.33 16 20 C 0.04 0.37 11.35 -19.18 -0.22 0.15 16 21 C -0.26 -1.92 11.37 29.12 0.33 -1.59 16 22 S 0.12 0.94 23.17 -107.50 -2.49 -1.55 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.50 7.18 -51.93 -0.37 0.13 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.40 3.87 7.65 -40.82 -0.31 3.56 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 31 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -35.35 318.11 -8.17 -43.52 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.03 Total: 0.00 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 0.42 Total: -6.48 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.29 Total: -40.94 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -4.70 Total: -5.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.35 -8.17 -43.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183502690.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.175 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds