Wall clock time and date at job start Tue Mar 31 2020 05:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46497 * 109.46926 * 65.00537 * 4 2 1 6 6 C 1.34773 * 120.00234 * 180.02562 * 5 4 2 7 7 O 1.21289 * 120.00083 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00361 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.47329 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99962 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00075 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99962 * 179.97438 * 10 9 8 13 13 N 1.31637 * 119.99561 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99996 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47080 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47120 * 120.00121 * 14 12 10 17 17 H 1.48506 * 109.47103 * 239.99927 * 14 12 10 18 18 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 19 19 N 1.29021 * 124.91824 * 240.00316 * 18 2 1 20 20 C 1.31782 * 117.13006 * 179.97438 * 19 18 2 21 21 C 1.33645 * 114.49803 * 359.97438 * 20 19 18 22 22 S 1.70979 * 124.91513 * 59.69468 * 18 2 1 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 27 27 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 28 28 H 0.97005 * 120.00366 * 359.97438 * 5 4 2 29 29 H 1.09003 * 109.47201 * 299.99295 * 8 6 5 30 30 H 1.09000 * 109.47570 * 59.99615 * 8 6 5 31 31 H 0.97001 * 119.99232 * 180.02562 * 13 12 10 32 32 H 1.07994 * 122.75497 * 180.02562 * 20 19 18 33 33 H 1.07997 * 126.03884 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0353 -2.4423 6 6 1.9957 -0.4137 -3.6659 7 8 2.6257 -1.4439 -3.7792 8 6 1.5966 0.3643 -4.8933 9 16 2.2001 -0.4889 -6.3711 10 6 1.6095 0.6059 -7.6191 11 1 1.0570 1.4918 -7.3429 12 6 1.8553 0.3303 -8.9571 13 7 2.5302 -0.7487 -9.2936 14 14 1.2286 1.4906 -10.2801 15 1 0.5045 2.6207 -9.6449 16 1 2.3765 2.0149 -11.0629 17 1 0.3062 0.7580 -11.1844 18 6 2.0323 -0.7104 1.2305 19 7 2.7772 -0.1769 2.1389 20 6 3.1277 -0.9411 3.1537 21 6 2.6516 -2.1886 3.0985 22 16 1.6915 -2.3379 1.6286 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.1264 -0.7995 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 1.1484 0.8591 -2.3518 29 1 0.5103 0.4425 -4.9367 30 1 2.0312 1.3629 -4.8478 31 1 2.7023 -0.9410 -10.2286 32 1 3.7482 -0.5880 3.9641 33 1 2.8220 -2.9666 3.8278 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183502710.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:32 Heat of formation + Delta-G solvation = -1.151886 kcal Electronic energy + Delta-G solvation = -17018.090993 eV Core-core repulsion = 14103.757335 eV Total energy + Delta-G solvation = -2914.333658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09797 -39.20583 -36.36910 -33.06274 -32.42636 -30.06780 -29.28097 -26.58777 -25.55056 -25.13613 -21.81586 -20.78510 -20.08515 -18.21739 -17.69238 -16.40379 -16.20919 -15.76366 -15.49379 -14.80562 -14.79271 -14.47512 -14.16251 -13.79827 -13.47257 -13.28775 -13.00957 -12.58504 -12.30240 -12.01534 -11.82446 -11.55658 -11.35759 -11.06933 -11.01954 -10.75977 -9.96094 -9.81151 -9.70869 -9.47116 -9.18985 -9.07992 -8.94386 -8.23312 -6.50096 -6.21867 -3.92327 0.37893 1.04765 1.45900 2.50665 2.98095 3.07590 3.21746 3.27282 3.31782 3.57750 3.92708 4.20229 4.37420 4.60150 4.70576 4.87404 5.04084 5.12622 5.13470 5.16009 5.35643 5.41201 5.56587 5.61525 5.80134 5.81694 5.84126 5.89139 6.13377 6.52882 7.41619 7.59890 7.65322 8.35466 8.57926 9.23669 10.85630 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.050787 B = 0.002711 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.191307 B =10325.141095 C =10551.642880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.029 4.029 3 H 0.109 0.891 4 C 0.129 3.871 5 N -0.737 5.737 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.058 3.942 19 N -0.474 5.474 20 C 0.038 3.962 21 C -0.265 4.265 22 S 0.137 5.863 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.399 0.601 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.268 0.732 32 H 0.176 0.824 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 0.548 24.540 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.051 4.051 3 H 0.127 0.873 4 C 0.003 3.997 5 N -0.392 5.392 6 C 0.319 3.681 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.503 5.503 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.220 4.220 19 N -0.188 5.188 20 C -0.113 4.113 21 C -0.404 4.404 22 S 0.391 5.609 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.234 0.766 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.193 0.807 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.491 -1.544 23.694 23.999 hybrid contribution -0.680 2.561 0.224 2.659 sum -4.170 1.016 23.918 24.300 Atomic orbital electron populations 1.21964 0.92393 1.03160 1.03198 1.20041 0.96804 1.00374 0.87930 0.87252 1.21300 1.00621 0.95154 0.82602 1.45932 1.59841 1.28181 1.05256 1.20326 0.78640 0.85501 0.83671 1.90714 1.38233 1.23847 1.86141 1.23528 1.04870 1.03486 0.98477 1.85420 1.72796 1.33023 0.92173 1.22906 1.41365 1.11255 0.92741 0.90852 1.25004 0.94874 0.95813 0.97968 1.70035 1.37506 1.24659 1.18086 0.86108 0.78572 0.80119 0.80640 1.19614 1.20574 1.20576 1.26858 0.99810 0.95402 0.99952 1.66280 1.12980 1.37134 1.02366 1.21813 1.01915 0.89772 0.97850 1.27172 1.07163 1.02666 1.03404 1.84171 1.47143 1.12905 1.16657 0.90636 0.91774 0.91656 0.91035 0.91081 0.76620 0.89110 0.89117 0.92238 0.80697 0.80507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.96 37.16 0.33 -0.75 16 2 C -0.03 -0.26 2.85 -91.77 -0.26 -0.52 16 3 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.13 1.50 4.93 -4.04 -0.02 1.48 16 5 N -0.74 -9.43 5.28 -60.30 -0.32 -9.75 16 6 C 0.53 9.75 7.85 -10.99 -0.09 9.66 16 7 O -0.52 -11.63 15.86 5.55 0.09 -11.55 16 8 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.53 -15.13 9.50 30.94 0.29 -14.84 16 11 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 13 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 14 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.06 0.58 6.03 -13.46 -0.08 0.50 16 19 N -0.47 -5.25 10.54 -11.86 -0.13 -5.37 16 20 C 0.04 0.33 11.35 -19.18 -0.22 0.12 16 21 C -0.26 -2.02 11.37 29.12 0.33 -1.69 16 22 S 0.14 1.18 22.67 -107.50 -2.44 -1.25 16 23 H 0.07 0.49 7.18 -51.93 -0.37 0.12 16 24 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.87 8.11 -51.93 -0.42 0.44 16 28 H 0.40 3.82 7.65 -40.82 -0.31 3.51 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 31 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -35.09 317.32 -8.12 -43.21 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.02 Total: -0.26 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 0.42 Total: -6.88 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.29 Total: -40.51 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -4.65 Total: -5.10 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.09 -8.12 -43.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183502710.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.057 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds