Wall clock time and date at job start Tue Mar 31 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 113.99863 * 2 1 4 4 C 1.52998 * 109.47382 * 179.97438 * 3 2 1 5 5 S 1.81394 * 109.47703 * 179.97438 * 4 3 2 6 6 O 1.42106 * 110.54475 * 291.62530 * 5 4 3 7 7 O 1.42101 * 110.54444 * 68.37413 * 5 4 3 8 8 O 1.52196 * 104.45506 * 179.97438 * 5 4 3 9 9 C 1.35905 * 113.99669 * 74.99523 * 8 5 4 10 10 C 1.39150 * 119.93518 * 269.72992 * 9 8 5 11 11 C 1.38522 * 120.44434 * 179.72264 * 10 9 8 12 12 C 1.37673 * 120.30276 * 0.55467 * 11 10 9 13 13 C 1.40730 * 119.85575 * 359.72084 * 12 11 10 14 14 C 1.41402 * 120.21655 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99902 * 24.40974 * 14 13 12 16 16 C 1.39932 * 119.99934 * 204.40454 * 14 13 12 17 17 N 1.30821 * 120.00217 * 17.87248 * 16 14 13 18 18 Si 1.86800 * 119.99970 * 197.87495 * 16 14 13 19 19 H 1.48498 * 109.47373 * 89.99795 * 18 16 14 20 20 H 1.48509 * 109.47193 * 210.00085 * 18 16 14 21 21 H 1.48502 * 109.47065 * 329.99584 * 18 16 14 22 22 C 1.38100 * 119.93010 * 90.00565 * 9 8 5 23 23 H 1.08999 * 109.47322 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47296 * 300.00375 * 1 2 3 25 25 H 1.09000 * 109.46976 * 60.00254 * 1 2 3 26 26 H 1.09005 * 109.47827 * 59.99788 * 3 2 1 27 27 H 1.09001 * 109.47554 * 299.99646 * 3 2 1 28 28 H 1.08998 * 109.47213 * 59.99666 * 4 3 2 29 29 H 1.09000 * 109.47024 * 300.00136 * 4 3 2 30 30 H 1.07994 * 119.77753 * 359.97438 * 10 9 8 31 31 H 1.08003 * 119.85101 * 180.27978 * 11 10 9 32 32 H 1.08006 * 120.07251 * 179.74480 * 12 11 10 33 33 H 0.97005 * 120.00388 * 179.97438 * 17 16 14 34 34 H 1.08006 * 120.15198 * 359.97352 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 16 4.2732 2.8418 -0.0001 6 8 4.0285 3.4961 -1.2376 7 8 4.0276 3.4976 1.2363 8 8 5.7741 2.5894 0.0013 9 6 6.2668 2.1798 -1.1973 10 6 6.3303 0.8218 -1.4944 11 6 6.8252 0.3929 -2.7151 12 6 7.2706 1.3063 -3.6438 13 6 7.2175 2.6825 -3.3543 14 6 7.6725 3.6273 -4.3029 15 1 7.6880 3.3740 -5.3527 16 6 8.1023 4.8905 -3.8814 17 7 8.4179 5.0894 -2.6275 18 14 8.2256 6.2929 -5.1093 19 1 6.9334 7.0231 -5.1581 20 1 9.3047 7.2236 -4.6911 21 1 8.5368 5.7468 -6.4547 22 6 6.7086 3.1118 -2.1155 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6885 1.8465 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8574 0.6436 -0.8891 29 1 3.8567 0.6440 0.8909 30 1 5.9877 0.0977 -0.7702 31 1 6.8660 -0.6632 -2.9374 32 1 7.6596 0.9675 -4.5927 33 1 8.7163 5.9650 -2.3354 34 1 6.6632 4.1657 -1.8836 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192147850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:44 Heat of formation + Delta-G solvation = -156.135657 kcal Electronic energy + Delta-G solvation = -20775.051651 eV Core-core repulsion = 17378.951770 eV Total energy + Delta-G solvation = -3396.099881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.69916 -39.02242 -38.65714 -38.34526 -37.28178 -35.57044 -33.13734 -31.70212 -30.83908 -27.59458 -27.31789 -24.80105 -23.96677 -23.01706 -21.12194 -19.74226 -19.20082 -18.40711 -18.13018 -17.45977 -17.13584 -16.98906 -16.62858 -16.06718 -15.99937 -15.86047 -14.83360 -14.65002 -14.38891 -14.08715 -13.97461 -13.49474 -13.41533 -13.28594 -13.23528 -12.98894 -12.82916 -12.74229 -12.55652 -12.45890 -12.13288 -11.94305 -11.89311 -11.49646 -11.12886 -10.78716 -9.56211 -9.48770 -8.75059 -6.47310 -1.01709 0.59739 0.90126 1.18317 1.37260 1.49125 1.51890 2.16684 2.37624 2.56733 2.90516 3.00081 3.48095 3.50501 3.65833 4.07909 4.15810 4.35284 4.40432 4.47555 4.48132 4.55371 4.63562 4.81519 4.84008 4.99295 5.04172 5.21944 5.52053 5.67789 5.80753 5.93974 6.01396 6.19381 6.49371 6.78810 6.81790 8.22287 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.005009 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.078082 B = 5588.773815 C = 5959.568761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.399 6.399 3 C 0.068 3.932 4 C -0.635 4.635 5 S 2.605 3.395 6 O -0.979 6.979 7 O -0.968 6.968 8 O -0.670 6.670 9 C 0.059 3.941 10 C -0.253 4.253 11 C -0.068 4.068 12 C -0.221 4.221 13 C 0.085 3.915 14 C -0.485 4.485 15 H 0.094 0.906 16 C 0.029 3.971 17 N -0.824 5.824 18 Si 0.985 3.015 19 H -0.267 1.267 20 H -0.267 1.267 21 H -0.246 1.246 22 C -0.165 4.165 23 H 0.106 0.894 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.157 0.843 29 H 0.167 0.833 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.121 0.879 33 H 0.291 0.709 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 -7.744 2.543 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.319 6.319 3 C -0.010 4.010 4 C -0.764 4.764 5 S 2.703 3.297 6 O -0.977 6.977 7 O -0.966 6.966 8 O -0.631 6.631 9 C 0.018 3.982 10 C -0.274 4.274 11 C -0.086 4.086 12 C -0.242 4.242 13 C 0.082 3.918 14 C -0.514 4.514 15 H 0.112 0.888 16 C -0.187 4.187 17 N -0.449 5.449 18 Si 0.805 3.195 19 H -0.192 1.192 20 H -0.192 1.192 21 H -0.169 1.169 22 C -0.188 4.188 23 H 0.125 0.875 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.175 0.825 29 H 0.185 0.815 30 H 0.165 0.835 31 H 0.170 0.830 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.043 -6.985 2.925 12.578 hybrid contribution -0.080 0.641 -0.018 0.646 sum -10.123 -6.344 2.907 12.295 Atomic orbital electron populations 1.23107 0.78794 1.04655 1.01489 1.87886 1.22012 1.26285 1.95682 1.22146 0.88763 0.87135 1.02927 1.30775 1.06545 1.23961 1.15080 1.04956 0.73732 0.77761 0.73228 1.93634 1.83934 1.73733 1.46416 1.93543 1.83596 1.73269 1.46191 1.85538 1.47887 1.86872 1.42757 1.18306 1.05529 0.94342 0.80003 1.20897 1.14348 0.91456 1.00666 1.20905 0.95904 0.99913 0.91887 1.21475 1.08857 0.92185 1.01642 1.17845 0.89012 0.93514 0.91415 1.19992 1.37879 0.97807 0.95708 0.88779 1.26938 0.91494 1.02475 0.97757 1.69854 1.30501 1.25610 1.18941 0.85157 0.78868 0.76538 0.78974 1.19176 1.19184 1.16944 1.21416 1.02940 0.98463 0.95939 0.87544 0.92439 0.92832 0.90183 0.90912 0.82536 0.81511 0.83528 0.82965 0.86072 0.89827 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -9.30 10.70 -148.98 -1.59 -10.89 16 3 C 0.07 1.62 5.95 71.98 0.43 2.05 16 4 C -0.63 -16.72 5.83 71.98 0.42 -16.30 16 5 S 2.61 97.49 5.16 -56.49 -0.29 97.20 16 6 O -0.98 -43.86 16.26 -118.57 -1.93 -45.78 16 7 O -0.97 -39.22 18.09 -118.57 -2.15 -41.36 16 8 O -0.67 -28.94 10.04 -61.57 -0.62 -29.56 16 9 C 0.06 2.74 4.79 22.46 0.11 2.85 16 10 C -0.25 -9.77 8.47 22.56 0.19 -9.58 16 11 C -0.07 -2.55 10.02 22.20 0.22 -2.33 16 12 C -0.22 -9.79 9.79 22.75 0.22 -9.56 16 13 C 0.08 4.47 5.57 -21.31 -0.12 4.35 16 14 C -0.49 -25.42 9.05 23.46 0.21 -25.21 16 15 H 0.09 4.57 7.91 -2.91 -0.02 4.55 16 16 C 0.03 1.47 5.14 85.25 0.44 1.91 16 17 N -0.82 -44.22 10.95 21.82 0.24 -43.98 16 18 Si 0.98 38.14 29.59 68.60 2.03 40.17 16 19 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 22 C -0.17 -8.98 7.68 22.82 0.18 -8.81 16 23 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.16 4.02 6.62 -2.39 -0.02 4.01 16 29 H 0.17 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.15 4.37 7.51 -2.91 -0.02 4.35 16 31 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 33 H 0.29 14.20 8.30 -92.70 -0.77 13.44 16 34 H 0.10 6.12 6.16 -2.91 -0.02 6.11 16 Total: -1.00 -69.86 306.89 0.35 -69.51 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 1.11 Total: 23.84 kcal Atomic # 6 Polarization: -62.69 SS G_CDS: 3.55 Total: -59.14 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.24 Total: -43.98 kcal Atomic # 8 Polarization: -121.31 SS G_CDS: -6.29 Total: -127.60 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Atomic # 16 Polarization: 97.49 SS G_CDS: -0.29 Total: 97.20 kcal Total: -69.86 0.35 -69.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192147850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.624 kcal (2) G-P(sol) polarization free energy of solvation -69.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds