Wall clock time and date at job start Tue Mar 31 2020 05:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.36379 * 122.71810 * 2 1 4 4 H 0.97001 * 122.46564 * 0.02833 * 3 2 1 5 5 C 1.33136 * 115.06877 * 179.97438 * 3 2 1 6 6 S 1.71201 * 125.00630 * 180.02562 * 5 3 2 7 7 S 1.70829 * 109.99058 * 359.73088 * 5 3 2 8 8 C 1.31495 * 122.71688 * 180.02562 * 2 1 3 9 9 C 1.50701 * 125.34227 * 359.97438 * 8 2 1 10 10 C 1.50703 * 109.47064 * 90.00091 * 9 8 2 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47199 * 324.99664 * 13 12 10 15 15 C 1.52996 * 109.47084 * 84.99619 * 13 12 10 16 16 C 1.50695 * 109.47162 * 204.99813 * 13 12 10 17 17 H 1.07999 * 120.00376 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00418 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99687 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00415 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47193 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47320 * 119.99881 * 20 18 16 23 23 H 1.48506 * 109.47170 * 239.99433 * 20 18 16 24 24 H 1.09002 * 109.46914 * 269.99650 * 1 2 3 25 25 H 1.08994 * 109.47554 * 29.99827 * 1 2 3 26 26 H 1.09001 * 109.46675 * 150.00137 * 1 2 3 27 27 H 1.09002 * 109.47060 * 210.00055 * 9 8 2 28 28 H 1.09001 * 109.47380 * 330.00143 * 9 8 2 29 29 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 30 30 H 1.09002 * 109.47281 * 299.99855 * 15 13 12 31 31 H 1.08999 * 109.47646 * 60.00441 * 15 13 12 32 32 H 1.09000 * 109.47057 * 180.02562 * 15 13 12 33 33 H 0.97003 * 120.00117 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2441 1.1474 0.0000 4 1 1.8370 2.0278 0.0004 5 6 3.5637 0.9702 0.0005 6 16 4.7237 2.2293 0.0013 7 16 3.9288 -0.6986 0.0086 8 6 2.2177 -1.1063 -0.0005 9 6 1.6546 -2.5042 -0.0006 10 6 1.4664 -2.9699 -1.4214 11 8 1.7601 -2.2385 -2.3432 12 7 0.9707 -4.1987 -1.6678 13 6 0.7883 -4.6516 -3.0490 14 1 0.4933 -3.8074 -3.6723 15 6 2.1018 -5.2369 -3.5715 16 6 -0.2853 -5.7081 -3.0936 17 1 -0.7818 -6.0122 -2.1840 18 6 -0.6331 -6.2875 -4.2954 19 7 -0.0282 -5.9176 -5.4031 20 14 -1.9634 -7.5976 -4.3505 21 1 -2.4835 -7.8330 -2.9796 22 1 -3.0707 -7.1422 -5.2291 23 1 -1.3933 -8.8597 -4.8867 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 2.3446 -3.1739 0.5129 28 1 0.6935 -2.5088 0.5136 29 1 0.7355 -4.7835 -0.9305 30 1 2.8784 -4.4726 -3.5393 31 1 2.3968 -6.0811 -2.9484 32 1 1.9662 -5.5734 -4.5994 33 1 -0.2726 -6.3254 -6.2486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194648996.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:03 Heat of formation + Delta-G solvation = -7.339347 kcal Electronic energy + Delta-G solvation = -17908.440294 eV Core-core repulsion = 14993.838328 eV Total energy + Delta-G solvation = -2914.601966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.02966 -39.03445 -35.08776 -33.99409 -32.52119 -30.62107 -29.03384 -26.87038 -26.32975 -25.35060 -21.82996 -20.08597 -19.49871 -19.30808 -18.36179 -17.35734 -16.10633 -15.87097 -15.52456 -15.29844 -14.68140 -14.37765 -13.82333 -13.37570 -13.32678 -13.13020 -12.87575 -12.52346 -12.29124 -11.78223 -11.42962 -11.34903 -11.18846 -11.04332 -10.84275 -10.40469 -10.33964 -10.24512 -10.04245 -9.24236 -9.14875 -8.66457 -8.08835 -7.86662 -7.55933 -6.22302 -4.32504 0.13504 0.72367 1.22485 1.39996 1.79895 2.52810 3.12641 3.16479 3.24641 3.26436 3.89264 4.21728 4.29719 4.54924 4.63364 4.97007 5.08153 5.10231 5.21847 5.28148 5.44009 5.55133 5.98186 6.22751 6.71363 6.84962 7.03512 7.29219 7.41927 7.57654 7.78994 8.04161 8.48025 8.64950 8.92704 9.35440 10.83528 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.036423 B = 0.003525 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.560818 B = 7941.473225 C = 8231.654086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.090 3.910 3 N -0.537 5.537 4 H 0.433 0.567 5 C 0.194 3.806 6 S -0.556 6.556 7 S 0.280 5.720 8 C -0.202 4.202 9 C -0.069 4.069 10 C 0.498 3.502 11 O -0.544 6.544 12 N -0.705 5.705 13 C 0.265 3.735 14 H 0.049 0.951 15 C -0.148 4.148 16 C -0.536 4.536 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.882 5.882 20 Si 0.902 3.098 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.390 0.610 30 H 0.015 0.985 31 H 0.027 0.973 32 H 0.091 0.909 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 6.357 13.962 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.026 4.026 3 N -0.148 5.148 4 H 0.274 0.726 5 C -0.169 4.169 6 S -0.423 6.423 7 S 0.527 5.473 8 C -0.327 4.327 9 C -0.112 4.112 10 C 0.281 3.719 11 O -0.423 6.423 12 N -0.353 5.353 13 C 0.163 3.837 14 H 0.067 0.933 15 C -0.207 4.207 16 C -0.575 4.575 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.519 5.519 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.223 0.777 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.622 6.935 13.069 14.884 hybrid contribution -2.795 -0.444 0.126 2.833 sum -1.173 6.492 13.195 14.752 Atomic orbital electron populations 1.20742 0.85371 1.05614 1.04013 1.19626 0.96398 0.84472 1.02092 1.42701 1.04343 1.10642 1.57163 0.72569 1.26936 0.90285 1.06598 0.93093 1.93147 1.42189 1.37801 1.69123 1.84803 1.02883 0.92018 1.67548 1.23494 0.97538 0.98694 1.12981 1.20239 1.03253 0.89787 0.97910 1.20167 0.79041 0.82959 0.89710 1.90709 1.50949 1.54831 1.45768 1.46538 1.62498 1.14493 1.11788 1.18774 0.93533 0.95065 0.76295 0.93331 1.22086 0.96584 0.97943 1.04062 1.21227 1.20087 1.21936 0.94204 0.91968 1.24897 0.96555 0.96875 0.95378 1.69909 1.41125 1.42279 0.98584 0.86392 0.81325 0.81188 0.78176 1.19719 1.20856 1.20822 0.89257 0.90104 0.88347 0.87396 0.86839 0.77747 0.96617 0.95385 0.89092 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 9.75 36.01 0.35 -0.33 16 2 C 0.09 0.89 6.80 -82.41 -0.56 0.33 16 3 N -0.54 -5.65 5.50 -10.98 -0.06 -5.71 16 4 H 0.43 3.56 8.96 -40.82 -0.37 3.20 16 5 C 0.19 2.62 7.52 53.33 0.40 3.02 16 6 S -0.56 -9.48 31.15 -107.50 -3.35 -12.83 16 7 S 0.28 3.40 23.09 -107.50 -2.48 0.92 16 8 C -0.20 -2.24 4.95 -36.15 -0.18 -2.42 16 9 C -0.07 -0.71 5.55 -29.03 -0.16 -0.88 16 10 C 0.50 8.16 7.79 -10.98 -0.09 8.07 16 11 O -0.54 -11.39 15.70 5.56 0.09 -11.30 16 12 N -0.71 -12.56 5.07 -54.94 -0.28 -12.84 16 13 C 0.26 6.21 2.56 -69.09 -0.18 6.03 16 14 H 0.05 1.33 7.58 -51.93 -0.39 0.94 16 15 C -0.15 -3.48 9.26 37.16 0.34 -3.13 16 16 C -0.54 -13.24 8.73 -34.44 -0.30 -13.54 16 17 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.88 -23.86 11.32 55.43 0.63 -23.23 16 20 Si 0.90 19.61 29.54 -169.99 -5.02 14.59 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.82 7.24 -51.93 -0.38 0.44 16 27 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.11 0.81 7.30 -51.93 -0.38 0.44 16 29 H 0.39 5.72 8.54 -40.82 -0.35 5.38 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 313.35 15.07 4.72 4.72 Total: -1.00 -33.24 313.35 -10.05 -43.29 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -3.83 Total: 3.63 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.46 Total: -1.24 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.29 Total: -41.78 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: -6.08 SS G_CDS: -5.83 Total: -11.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.24 -10.05 -43.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194648996.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.947 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds