Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00246 * 2 1 4 4 H 1.48504 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46861 * 299.99845 * 3 2 1 6 6 H 1.48498 * 109.46777 * 60.00246 * 3 2 1 7 7 C 1.37888 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99557 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99962 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46781 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99550 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00124 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99595 * 179.97438 * 11 10 9 14 14 N 1.46508 * 109.47149 * 180.02562 * 13 11 10 15 15 C 1.39740 * 120.00299 * 180.02562 * 14 13 11 16 16 C 1.38856 * 120.06235 * 0.02562 * 15 14 13 17 17 C 1.38328 * 119.91062 * 179.97438 * 16 15 14 18 18 F 1.35098 * 119.97507 * 179.97438 * 17 16 15 19 19 C 1.38515 * 120.04568 * 359.72005 * 17 16 15 20 20 C 1.38247 * 120.12873 * 0.56035 * 19 17 16 21 21 C 1.38217 * 120.08554 * 359.43723 * 20 19 17 22 22 Cl 1.73602 * 120.02309 * 180.25641 * 21 20 19 23 23 H 0.97005 * 119.99594 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46783 * 60.00460 * 9 7 2 25 25 H 1.09002 * 109.46977 * 300.00305 * 9 7 2 26 26 H 0.96993 * 120.00421 * 0.02562 * 10 9 7 27 27 H 1.09004 * 109.47398 * 60.00721 * 13 11 10 28 28 H 1.08994 * 109.47837 * 300.00458 * 13 11 10 29 29 H 0.97003 * 119.99451 * 0.02562 * 14 13 11 30 30 H 1.07997 * 120.04367 * 359.95592 * 16 15 14 31 31 H 1.07996 * 119.93776 * 180.29296 * 19 17 16 32 32 H 1.08002 * 119.96049 * 179.72326 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7328 -6.0288 -0.0006 14 7 2.0003 -7.2976 -0.0005 15 6 2.6989 -8.5078 -0.0004 16 6 4.0875 -8.5094 0.0001 17 6 4.7759 -9.7092 0.0007 18 9 6.1269 -9.7123 0.0006 19 6 4.0811 -10.9075 0.0067 20 6 2.6986 -10.9080 0.0003 21 6 2.0053 -9.7123 -0.0002 22 17 0.2693 -9.7149 -0.0014 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.1565 -3.4355 -0.0002 27 1 3.3601 -5.9711 0.8890 28 1 3.3589 -5.9713 -0.8909 29 1 1.0303 -7.2975 -0.0004 30 1 4.6293 -7.5752 -0.0003 31 1 4.6203 -11.8432 0.0119 32 1 2.1596 -11.8439 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230152981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = -69.809541 kcal Electronic energy + Delta-G solvation = -19014.140528 eV Core-core repulsion = 15528.572769 eV Total energy + Delta-G solvation = -3485.567760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.12675 -39.88093 -38.88546 -36.50659 -35.49137 -34.33423 -32.48071 -30.64457 -30.27076 -27.93297 -26.17123 -23.25509 -22.61418 -21.98366 -19.98628 -18.60062 -17.41975 -16.86124 -16.62268 -15.93539 -15.88933 -15.52921 -15.42936 -15.07737 -14.73880 -14.17516 -13.92988 -13.89037 -13.29167 -12.99479 -12.82938 -12.50078 -12.06704 -11.85932 -11.75018 -11.44013 -11.04847 -11.00485 -10.97872 -10.41351 -10.40764 -9.49222 -9.37430 -8.96723 -8.85073 -8.08647 -7.73315 -6.24933 -4.32591 0.80381 1.11713 2.02521 2.98817 3.05371 3.18749 3.26236 3.28955 3.29543 3.87868 4.08037 4.28640 4.41264 4.77324 4.92597 5.04274 5.11627 5.20499 5.28060 5.28382 5.51656 5.60752 5.85898 5.89970 6.41502 6.85743 7.15734 7.21218 7.38547 7.49302 7.55114 7.86182 8.40874 8.62271 8.86574 9.34144 10.85198 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.025341 B = 0.003133 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.676319 B = 8935.345114 C =10019.573130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.249 3.751 10 N -0.704 5.704 11 C 0.493 3.507 12 O -0.550 6.550 13 C 0.096 3.904 14 N -0.717 5.717 15 C 0.264 3.736 16 C -0.233 4.233 17 C 0.155 3.845 18 F -0.136 7.136 19 C -0.211 4.211 20 C -0.031 4.031 21 C -0.129 4.129 22 Cl -0.062 7.062 23 H 0.266 0.734 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.394 0.606 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.419 0.581 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.707 -20.369 0.004 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.352 5.352 11 C 0.276 3.724 12 O -0.429 6.429 13 C -0.032 4.032 14 N -0.347 5.347 15 C 0.155 3.845 16 C -0.257 4.257 17 C 0.135 3.865 18 F -0.114 7.114 19 C -0.232 4.232 20 C -0.050 4.050 21 C -0.161 4.161 22 Cl -0.034 7.034 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.227 0.773 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.261 0.739 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.641 -20.121 0.003 21.523 hybrid contribution 0.622 1.111 -0.001 1.273 sum 8.263 -19.010 0.002 20.728 Atomic orbital electron populations 1.69980 1.06145 1.27356 1.48663 1.24963 0.94934 0.99555 0.94554 0.86336 0.79821 0.82804 0.77819 1.19571 1.20745 1.20740 1.21238 0.93344 0.90295 1.53542 0.91711 1.19184 0.88223 0.81757 0.97986 1.46412 1.11522 1.05757 1.71484 1.20241 0.89303 0.84645 0.78193 1.90678 1.16582 1.84467 1.51208 1.21263 0.94916 0.83408 1.03603 1.44687 1.10033 1.01164 1.78854 1.17167 0.90334 0.85250 0.91719 1.20477 0.91992 0.98386 1.14825 1.17385 0.76622 0.93947 0.98541 1.91510 1.29015 1.97430 1.93475 1.20770 0.93918 0.97215 1.11339 1.20617 0.93014 0.96468 0.94899 1.20365 0.85077 0.93444 1.17215 1.98372 1.09031 1.98556 1.97395 0.92392 0.95280 0.95291 0.77325 0.88999 0.89002 0.73940 0.83848 0.84362 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.55 -14.28 9.28 -34.44 -0.32 -14.60 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.25 6.30 5.43 -5.20 -0.03 6.28 16 10 N -0.70 -13.62 5.55 -61.47 -0.34 -13.96 16 11 C 0.49 8.96 7.90 -10.98 -0.09 8.87 16 12 O -0.55 -12.29 15.67 5.56 0.09 -12.20 16 13 C 0.10 1.23 5.39 -5.19 -0.03 1.20 16 14 N -0.72 -9.64 5.66 -59.78 -0.34 -9.98 16 15 C 0.26 3.15 6.65 -83.74 -0.56 2.60 16 16 C -0.23 -2.48 9.29 -39.32 -0.37 -2.85 16 17 C 0.16 1.59 7.30 -39.45 -0.29 1.30 16 18 F -0.14 -1.44 17.27 2.25 0.04 -1.41 16 19 C -0.21 -1.87 10.02 -39.48 -0.40 -2.26 16 20 C -0.03 -0.28 9.82 -39.59 -0.39 -0.67 16 21 C -0.13 -1.45 6.34 -39.31 -0.25 -1.70 16 22 Cl -0.06 -0.73 27.59 -51.86 -1.43 -2.16 16 23 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.39 6.32 8.32 -40.82 -0.34 5.98 16 27 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 28 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 29 H 0.42 6.38 6.11 -40.82 -0.25 6.13 16 30 H 0.14 1.33 6.73 -52.49 -0.35 0.98 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -30.51 304.12 -7.48 -37.99 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -2.99 Total: 6.75 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.80 Total: -0.20 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.06 Total: -48.68 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.43 Total: -2.16 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.51 -7.48 -37.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230152981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.815 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds