Wall clock time and date at job start Tue Mar 31 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00246 * 2 1 4 4 H 1.48504 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46861 * 299.99845 * 3 2 1 6 6 H 1.48498 * 109.46777 * 60.00246 * 3 2 1 7 7 C 1.37888 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99557 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99962 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46781 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99550 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00124 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99595 * 179.97438 * 11 10 9 14 14 N 1.46508 * 109.47149 * 180.02562 * 13 11 10 15 15 C 1.39740 * 120.00299 * 180.02562 * 14 13 11 16 16 C 1.38856 * 120.06235 * 0.02562 * 15 14 13 17 17 C 1.38328 * 119.91062 * 179.97438 * 16 15 14 18 18 F 1.35098 * 119.97507 * 179.97438 * 17 16 15 19 19 C 1.38515 * 120.04568 * 359.72005 * 17 16 15 20 20 C 1.38247 * 120.12873 * 0.56035 * 19 17 16 21 21 C 1.38217 * 120.08554 * 359.43723 * 20 19 17 22 22 Cl 1.73602 * 120.02309 * 180.25641 * 21 20 19 23 23 H 0.97005 * 119.99594 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46783 * 60.00460 * 9 7 2 25 25 H 1.09002 * 109.46977 * 300.00305 * 9 7 2 26 26 H 0.96993 * 120.00421 * 0.02562 * 10 9 7 27 27 H 1.09004 * 109.47398 * 60.00721 * 13 11 10 28 28 H 1.08994 * 109.47837 * 300.00458 * 13 11 10 29 29 H 0.97003 * 119.99451 * 0.02562 * 14 13 11 30 30 H 1.07997 * 120.04367 * 359.95592 * 16 15 14 31 31 H 1.07996 * 119.93776 * 180.29296 * 19 17 16 32 32 H 1.08002 * 119.96049 * 179.72326 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7328 -6.0288 -0.0006 14 7 2.0003 -7.2976 -0.0005 15 6 2.6989 -8.5078 -0.0004 16 6 4.0875 -8.5094 0.0001 17 6 4.7759 -9.7092 0.0007 18 9 6.1269 -9.7123 0.0006 19 6 4.0811 -10.9075 0.0067 20 6 2.6986 -10.9080 0.0003 21 6 2.0053 -9.7123 -0.0002 22 17 0.2693 -9.7149 -0.0014 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.1565 -3.4355 -0.0002 27 1 3.3601 -5.9711 0.8890 28 1 3.3589 -5.9713 -0.8909 29 1 1.0303 -7.2975 -0.0004 30 1 4.6293 -7.5752 -0.0003 31 1 4.6203 -11.8432 0.0119 32 1 2.1596 -11.8439 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230152981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:16 Heat of formation + Delta-G solvation = -90.706366 kcal Electronic energy + Delta-G solvation = -19015.046683 eV Core-core repulsion = 15528.572769 eV Total energy + Delta-G solvation = -3486.473914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.91269 -41.00574 -40.11574 -37.37130 -36.58617 -36.03533 -34.41570 -31.44779 -31.29800 -29.53264 -27.49092 -24.74400 -23.71629 -22.98792 -21.51556 -19.68373 -18.73717 -18.00425 -17.53832 -17.35200 -17.02811 -16.85912 -16.55188 -16.32966 -16.06343 -15.31935 -15.10094 -14.92944 -14.42344 -14.23321 -14.12278 -13.91183 -13.56739 -13.34312 -12.92564 -12.76909 -12.52018 -12.31991 -12.23268 -11.84965 -11.47628 -11.24795 -10.98004 -10.83889 -9.92358 -9.75530 -8.61485 -8.30809 -6.47122 0.01666 0.34700 1.18722 1.43818 1.44253 1.57741 1.58679 1.92545 2.35472 2.51645 2.61258 3.04928 3.27408 3.67220 3.74951 4.07856 4.15741 4.26116 4.32217 4.38386 4.75717 4.85575 5.07478 5.14945 5.15904 5.21324 5.42667 5.59643 5.67892 5.81901 6.00269 6.42362 6.63613 6.79007 7.20639 7.37011 8.81450 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.025341 B = 0.003133 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.676319 B = 8935.345114 C =10019.573130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.698 5.698 11 C 0.491 3.509 12 O -0.596 6.596 13 C 0.112 3.888 14 N -0.732 5.732 15 C 0.248 3.752 16 C -0.233 4.233 17 C 0.146 3.854 18 F -0.138 7.138 19 C -0.199 4.199 20 C -0.027 4.027 21 C -0.142 4.142 22 Cl -0.074 7.074 23 H 0.268 0.732 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.413 0.587 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.408 0.592 30 H 0.157 0.843 31 H 0.164 0.836 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.626 -21.220 0.007 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.105 0.895 9 C 0.142 3.858 10 N -0.348 5.348 11 C 0.277 3.723 12 O -0.478 6.478 13 C -0.015 4.015 14 N -0.363 5.363 15 C 0.141 3.859 16 C -0.256 4.256 17 C 0.126 3.874 18 F -0.117 7.117 19 C -0.220 4.220 20 C -0.046 4.046 21 C -0.173 4.173 22 Cl -0.046 7.046 23 H 0.077 0.923 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.250 0.750 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.247 0.753 30 H 0.175 0.825 31 H 0.182 0.818 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.638 -21.020 0.006 23.559 hybrid contribution -0.287 1.229 -0.002 1.262 sum 10.351 -19.791 0.004 22.335 Atomic orbital electron populations 1.70140 1.08284 1.28507 1.50039 1.26058 0.95750 1.03920 0.93905 0.85121 0.79212 0.77388 0.77567 1.17445 1.20628 1.20617 1.21658 0.94447 0.90433 1.52731 0.89504 1.18587 0.88670 0.84165 0.94343 1.46075 1.11599 1.05114 1.72017 1.21196 0.89663 0.85310 0.76098 1.90659 1.19215 1.85176 1.52769 1.21252 0.93163 0.80700 1.06383 1.44694 1.09555 1.01787 1.80287 1.17289 0.90823 0.84784 0.92995 1.20616 0.91446 0.99341 1.14243 1.17539 0.76603 0.94369 0.98908 1.91509 1.29165 1.97452 1.93532 1.21089 0.93803 0.97872 1.09270 1.20904 0.93227 0.96656 0.93790 1.20625 0.84620 0.94201 1.17857 1.98368 1.10160 1.98580 1.97479 0.92277 0.99217 0.99228 0.75032 0.85997 0.86006 0.75261 0.82506 0.81806 0.81725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.98 41.31 29.54 68.60 2.03 43.34 16 4 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -29.06 9.28 25.60 0.24 -28.83 16 8 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.27 13.95 5.43 85.63 0.46 14.41 16 10 N -0.70 -27.02 5.55 -466.79 -2.59 -29.61 16 11 C 0.49 17.89 7.90 87.66 0.69 18.59 16 12 O -0.60 -27.71 15.67 -3.03 -0.05 -27.76 16 13 C 0.11 2.65 5.39 85.63 0.46 3.11 16 14 N -0.73 -19.07 5.66 -343.04 -1.94 -21.01 16 15 C 0.25 5.53 6.65 38.21 0.25 5.79 16 16 C -0.23 -4.38 9.29 22.44 0.21 -4.17 16 17 C 0.15 2.59 7.30 22.36 0.16 2.75 16 18 F -0.14 -2.56 17.27 44.97 0.78 -1.79 16 19 C -0.20 -2.90 10.02 22.34 0.22 -2.68 16 20 C -0.03 -0.42 9.82 22.27 0.22 -0.20 16 21 C -0.14 -2.98 6.34 22.45 0.14 -2.84 16 22 Cl -0.07 -1.72 27.59 -2.72 -0.08 -1.80 16 23 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H 0.41 12.60 8.32 -92.71 -0.77 11.83 16 27 H 0.12 2.19 7.95 -2.38 -0.02 2.17 16 28 H 0.12 2.19 7.95 -2.39 -0.02 2.17 16 29 H 0.41 12.59 6.11 -92.71 -0.57 12.03 16 30 H 0.16 2.41 6.73 -2.91 -0.02 2.39 16 31 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -68.97 304.12 1.81 -67.16 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.15 Total: 19.81 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 3.53 Total: 6.58 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -4.25 Total: -105.54 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -68.97 1.81 -67.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230152981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.546 kcal (2) G-P(sol) polarization free energy of solvation -68.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds