Wall clock time and date at job start Tue Mar 31 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 N 1.31129 * 126.55202 * 89.71163 * 11 10 9 13 13 C 1.34495 * 105.61418 * 179.91752 * 12 11 10 14 14 C 1.50707 * 126.28421 * 180.12698 * 13 12 11 15 15 H 1.08992 * 109.57821 * 345.23737 * 14 13 12 16 16 C 1.53095 * 109.57340 * 105.49805 * 14 13 12 17 17 C 1.52585 * 109.95419 * 182.82669 * 16 14 13 18 18 C 1.52581 * 110.73003 * 289.32494 * 17 16 14 19 19 C 1.53099 * 109.95274 * 70.67474 * 18 17 16 20 20 S 1.81753 * 109.57226 * 224.98288 * 14 13 12 21 21 N 1.29947 * 107.42895 * 0.35008 * 13 12 11 22 22 O 1.21296 * 110.24644 * 359.78073 * 21 13 12 23 23 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 25 25 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 26 26 H 1.08992 * 109.39215 * 302.97367 * 16 14 13 27 27 H 1.08997 * 109.39502 * 62.68318 * 16 14 13 28 28 H 1.09004 * 109.22482 * 49.64628 * 17 16 14 29 29 H 1.09001 * 109.22590 * 169.04179 * 17 16 14 30 30 H 1.09004 * 109.38929 * 190.82116 * 18 17 16 31 31 H 1.08996 * 109.38653 * 310.52671 * 18 17 16 32 32 H 1.08998 * 109.57982 * 56.78498 * 19 18 17 33 33 H 1.08999 * 109.57201 * 177.16847 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 7 1.7081 -6.0269 -1.0785 13 6 1.2717 -7.2072 -0.6036 14 6 0.8265 -8.3895 -1.4252 15 1 0.6577 -8.0757 -2.4552 16 6 1.9061 -9.4744 -1.3898 17 6 1.4954 -10.6469 -2.2757 18 6 0.3347 -11.4153 -1.6508 19 6 -0.9442 -10.5765 -1.7193 20 16 -0.7127 -9.0659 -0.7347 21 7 1.3000 -7.1391 0.6938 22 8 1.7079 -6.0532 1.0484 23 1 -0.4849 0.8401 0.0004 24 1 3.1244 -3.7267 -0.9039 25 1 3.1244 -3.7361 0.8761 26 1 2.8473 -9.0602 -1.7512 27 1 2.0355 -9.8230 -0.3652 28 1 1.1918 -10.2697 -3.2523 29 1 2.3449 -11.3186 -2.3987 30 1 0.1848 -12.3487 -2.1934 31 1 0.5667 -11.6370 -0.6092 32 1 -1.1492 -10.3069 -2.7553 33 1 -1.7792 -11.1503 -1.3172 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231028837.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:58 Heat of formation + Delta-G solvation = 50.925737 kcal Electronic energy + Delta-G solvation = -17432.718239 eV Core-core repulsion = 14520.642836 eV Total energy + Delta-G solvation = -2912.075403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.31041 -37.49657 -35.62640 -33.62942 -32.56368 -31.38234 -28.55325 -27.84685 -25.63629 -24.32582 -23.07716 -21.33418 -20.97624 -18.06635 -17.83300 -17.12223 -17.00499 -15.50743 -14.93956 -14.90728 -14.55821 -14.33950 -14.17036 -13.94906 -13.42173 -13.40008 -13.07653 -12.79437 -12.06129 -11.89020 -11.78648 -11.42994 -11.25671 -11.15277 -11.13937 -10.91620 -10.85305 -10.76596 -10.25189 -9.86510 -9.41388 -9.19446 -8.54009 -7.84274 -6.73872 -6.35856 -4.10520 1.16849 1.45331 2.22042 2.46292 3.03925 3.16438 3.20586 3.25842 3.39750 3.59214 4.06359 4.21840 4.34610 4.38647 4.56590 4.65006 4.84061 4.99475 5.01707 5.15713 5.20871 5.28141 5.42477 5.48564 5.59014 5.60519 5.68404 5.70404 5.85864 5.90380 6.10251 6.23208 7.48673 8.23000 8.41268 9.10140 10.72169 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.044890 B = 0.003187 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.603437 B = 8782.835874 C = 8985.003477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.925 3.075 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.526 4.526 8 H 0.081 0.919 9 S -0.081 6.081 10 C -0.043 4.043 11 C 0.229 3.771 12 N -0.475 5.475 13 C 0.175 3.825 14 C 0.042 3.958 15 H 0.117 0.883 16 C -0.114 4.114 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.091 4.091 20 S -0.220 6.220 21 N -0.369 5.369 22 O 0.083 5.917 23 H 0.270 0.730 24 H 0.111 0.889 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 -20.059 -3.858 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.751 3.249 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.674 4.674 8 H 0.099 0.901 9 S 0.145 5.855 10 C -0.192 4.192 11 C 0.009 3.991 12 N -0.210 5.210 13 C -0.098 4.098 14 C -0.089 4.089 15 H 0.135 0.865 16 C -0.154 4.154 17 C -0.164 4.164 18 C -0.162 4.162 19 C -0.239 4.239 20 S 0.006 5.994 21 N -0.077 5.077 22 O 0.023 5.977 23 H 0.080 0.920 24 H 0.129 0.871 25 H 0.122 0.878 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.837 -20.492 -2.963 20.722 hybrid contribution 2.455 1.069 -0.961 2.845 sum 3.292 -19.423 -3.924 20.087 Atomic orbital electron populations 1.70015 1.06030 1.27732 1.46359 1.25039 0.95127 0.99258 0.94151 0.86011 0.79599 0.81310 0.77989 1.19387 1.20465 1.20447 1.22751 0.94896 0.90029 1.59721 0.90094 1.85268 1.05062 0.98241 1.96944 1.21996 1.04463 0.85741 1.07004 1.28221 0.93977 0.96849 0.80086 1.71898 1.18709 1.01784 1.28584 1.24656 1.01844 0.94866 0.88462 1.21252 0.95901 0.91649 1.00052 0.86508 1.21806 0.97351 0.94017 1.02206 1.21523 0.98889 0.96950 0.99085 1.21741 0.93408 0.98349 1.02687 1.23557 1.01452 0.96252 1.02646 1.87462 1.30589 1.28857 1.52476 1.74633 1.17332 1.00785 1.14909 1.85323 1.58739 1.17880 1.35798 0.91995 0.87052 0.87813 0.90247 0.89980 0.91305 0.90481 0.90599 0.90391 0.89602 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.02 13.22 55.49 0.73 -24.28 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -14.12 9.50 30.94 0.29 -13.83 16 8 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.08 -2.03 21.42 -107.50 -2.30 -4.34 16 10 C -0.04 -0.83 6.30 36.00 0.23 -0.61 16 11 C 0.23 4.32 7.77 -13.05 -0.10 4.22 16 12 N -0.47 -8.92 11.55 -9.87 -0.11 -9.04 16 13 C 0.18 2.99 6.85 -156.37 -1.07 1.92 16 14 C 0.04 0.55 3.05 -27.83 -0.08 0.47 16 15 H 0.12 1.48 8.14 -51.93 -0.42 1.05 16 16 C -0.11 -1.17 5.03 -26.89 -0.14 -1.30 16 17 C -0.13 -0.94 5.61 -27.16 -0.15 -1.09 16 18 C -0.12 -0.86 5.76 -26.89 -0.15 -1.01 16 19 C -0.09 -0.75 6.45 37.21 0.24 -0.51 16 20 S -0.22 -2.90 21.55 -107.50 -2.32 -5.21 16 21 N -0.37 -6.70 11.96 30.90 0.37 -6.33 16 22 O 0.08 1.55 11.31 18.08 0.20 1.75 16 23 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 25 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.90 8.06 -51.93 -0.42 0.49 16 28 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 309.13 15.07 4.66 4.66 Total: -1.00 -30.69 309.13 -9.01 -39.70 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -4.18 Total: -2.60 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.04 Total: -9.84 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.99 Total: -39.66 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.20 Total: 1.75 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -4.62 Total: -9.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.69 -9.01 -39.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231028837.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.624 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds