Wall clock time and date at job start Tue Mar 31 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29029 * 124.91747 * 2 1 4 4 C 1.31778 * 117.12461 * 179.97438 * 3 2 1 5 5 C 1.50707 * 122.74764 * 180.02562 * 4 3 2 6 6 C 1.33632 * 114.50020 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.03568 * 179.97438 * 6 4 3 8 8 N 1.46506 * 109.47289 * 90.00197 * 7 6 4 9 9 C 1.34774 * 120.00072 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00066 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99838 * 180.02562 * 9 8 7 12 12 S 1.80997 * 109.47407 * 180.02562 * 11 9 8 13 13 C 1.76198 * 100.00268 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00294 * 359.97438 * 13 12 11 15 15 C 1.38798 * 119.99650 * 180.02562 * 13 12 11 16 16 N 1.31627 * 120.00589 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99648 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47366 * 89.99998 * 17 15 13 19 19 H 1.48504 * 109.47094 * 209.99633 * 17 15 13 20 20 H 1.48498 * 109.47221 * 329.99555 * 17 15 13 21 21 S 1.70972 * 124.91719 * 180.31033 * 2 1 3 22 22 H 1.08996 * 109.47105 * 89.97366 * 1 2 3 23 23 H 1.08996 * 109.47148 * 209.97740 * 1 2 3 24 24 H 1.08998 * 109.47275 * 329.97840 * 1 2 3 25 25 H 1.08998 * 109.46862 * 270.00077 * 5 4 3 26 26 H 1.08993 * 109.47111 * 29.99602 * 5 4 3 27 27 H 1.08992 * 109.46828 * 150.00165 * 5 4 3 28 28 H 1.09001 * 109.47438 * 329.99978 * 7 6 4 29 29 H 1.09004 * 109.47113 * 210.00234 * 7 6 4 30 30 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 31 31 H 1.09004 * 109.47043 * 299.99952 * 11 9 8 32 32 H 1.09001 * 109.47324 * 59.99585 * 11 9 8 33 33 H 0.96997 * 120.00713 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0246 0.0012 6 6 3.9353 -0.4006 0.0015 7 6 5.3574 -0.8994 0.0018 8 7 5.8184 -1.0599 1.3831 9 6 7.0686 -1.4988 1.6296 10 8 7.8123 -1.7604 0.7078 11 6 7.5426 -1.6645 3.0504 12 16 9.2506 -2.2634 3.0508 13 6 9.5395 -2.3632 4.7861 14 1 8.7591 -2.0885 5.4802 15 6 10.7706 -2.7940 5.2610 16 7 11.7220 -3.1283 4.4151 17 14 11.0766 -2.9005 7.1007 18 1 10.6952 -4.2502 7.5886 19 1 12.5161 -2.6626 7.3776 20 1 10.2620 -1.8734 7.7983 21 16 2.4856 -1.4019 -0.0076 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3634 0.8898 0.5142 25 1 4.7673 2.3009 -1.0264 26 1 4.0903 2.8791 0.5149 27 1 5.4429 1.7221 0.5153 28 1 5.9948 -0.1803 -0.5127 29 1 5.4056 -1.8599 -0.5113 30 1 5.2235 -0.8510 2.1202 31 1 7.4946 -0.7041 3.5638 32 1 6.9049 -2.3835 3.5647 33 1 12.5822 -3.4297 4.7469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266099354.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:13 Heat of formation + Delta-G solvation = -4.524853 kcal Electronic energy + Delta-G solvation = -17035.593661 eV Core-core repulsion = 14121.113740 eV Total energy + Delta-G solvation = -2914.479921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34047 -39.09403 -35.21234 -33.05107 -32.43697 -30.36147 -29.48135 -28.22827 -25.52559 -24.53746 -23.01679 -20.46085 -19.32163 -18.21802 -17.83151 -16.39653 -16.15773 -15.38265 -15.28780 -14.81565 -14.79770 -13.95981 -13.81386 -13.66238 -13.55756 -13.22421 -13.06411 -12.71055 -12.58101 -12.34456 -12.21723 -11.87763 -11.38525 -11.06974 -11.03311 -10.77723 -9.94727 -9.84448 -9.79213 -9.38180 -9.08362 -8.98296 -8.87330 -8.25252 -6.51274 -6.22514 -3.93268 0.30793 1.00595 1.43705 2.40715 3.04001 3.06537 3.22020 3.28104 3.33157 3.71650 3.76739 4.19572 4.47102 4.62349 4.80013 4.96979 5.02917 5.11939 5.12749 5.32621 5.38412 5.41805 5.48634 5.59452 5.67053 5.72008 5.87008 6.02639 6.12239 6.47572 7.42764 7.58793 7.63411 8.34457 8.53800 9.22871 10.84918 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.002962 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.555164 B = 9452.090205 C = 9634.311759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.048 3.952 3 N -0.475 5.475 4 C 0.090 3.910 5 C -0.084 4.084 6 C -0.250 4.250 7 C 0.203 3.797 8 N -0.736 5.736 9 C 0.534 3.466 10 O -0.515 6.515 11 C -0.153 4.153 12 S -0.059 6.059 13 C -0.536 4.536 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 S 0.136 5.864 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.399 0.601 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.309 6.608 -8.391 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.230 4.230 3 N -0.190 5.190 4 C -0.044 4.044 5 C -0.144 4.144 6 C -0.371 4.371 7 C 0.077 3.923 8 N -0.391 5.391 9 C 0.320 3.680 10 O -0.389 6.389 11 C -0.304 4.304 12 S 0.168 5.832 13 C -0.684 4.684 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.197 1.197 21 S 0.392 5.608 22 H 0.105 0.895 23 H 0.100 0.900 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.364 5.516 -9.984 24.219 hybrid contribution -0.457 0.984 2.573 2.792 sum -21.822 6.500 -7.412 23.945 Atomic orbital electron populations 1.20462 0.85066 1.04345 1.03966 1.27047 1.01830 0.91387 1.02689 1.66202 1.04411 1.31696 1.16699 1.20282 0.90192 0.94098 0.99811 1.20454 0.96080 0.94520 1.03302 1.25699 0.99779 0.95848 1.15767 1.19427 0.86368 1.01545 0.84923 1.46127 1.15181 1.70389 1.07447 1.20344 0.80501 0.75704 0.91458 1.90713 1.53980 1.48215 1.46024 1.23533 1.06728 1.05255 0.94844 1.85393 1.02813 1.85196 1.09846 1.22864 1.02040 1.51992 0.91495 0.90915 1.24992 0.94971 0.94585 0.99029 1.70012 1.04300 1.41592 1.34393 0.86164 0.77644 0.78604 0.83071 1.20267 1.20741 1.19686 1.84096 0.97117 1.11667 1.67911 0.89491 0.89969 0.89191 0.90307 0.90396 0.90101 0.89333 0.90354 0.76677 0.89121 0.89161 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.46 36.00 0.38 -0.06 16 2 C 0.05 0.44 7.39 -13.46 -0.10 0.34 16 3 N -0.47 -5.36 10.53 -8.06 -0.08 -5.44 16 4 C 0.09 0.98 6.74 -84.23 -0.57 0.42 16 5 C -0.08 -0.78 9.82 36.01 0.35 -0.43 16 6 C -0.25 -2.68 5.96 -35.92 -0.21 -2.89 16 7 C 0.20 2.45 5.60 -5.19 -0.03 2.42 16 8 N -0.74 -9.90 5.55 -61.47 -0.34 -10.25 16 9 C 0.53 9.79 7.85 -10.99 -0.09 9.70 16 10 O -0.52 -11.46 15.86 5.55 0.09 -11.37 16 11 C -0.15 -3.06 6.16 36.00 0.22 -2.83 16 12 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 13 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 14 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 15 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 16 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 17 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 S 0.14 1.24 23.18 -107.50 -2.49 -1.25 16 22 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.76 7.35 -51.93 -0.38 0.38 16 28 H 0.09 1.08 7.43 -51.93 -0.39 0.69 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.40 4.53 8.46 -40.82 -0.35 4.18 16 31 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 32 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -34.46 319.24 -8.41 -42.87 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.04 Total: -0.27 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 0.15 Total: -6.25 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.31 Total: -41.07 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -4.70 Total: -5.06 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.46 -8.41 -42.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266099354.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.344 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds