Wall clock time and date at job start Tue Mar 31 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29029 * 124.91747 * 2 1 4 4 C 1.31778 * 117.12461 * 179.97438 * 3 2 1 5 5 C 1.50707 * 122.74764 * 180.02562 * 4 3 2 6 6 C 1.33632 * 114.50020 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.03568 * 179.97438 * 6 4 3 8 8 N 1.46506 * 109.47289 * 90.00197 * 7 6 4 9 9 C 1.34774 * 120.00072 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00066 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99838 * 180.02562 * 9 8 7 12 12 S 1.80997 * 109.47407 * 180.02562 * 11 9 8 13 13 C 1.76198 * 100.00268 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00294 * 359.97438 * 13 12 11 15 15 C 1.38798 * 119.99650 * 180.02562 * 13 12 11 16 16 N 1.31627 * 120.00589 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99648 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47366 * 89.99998 * 17 15 13 19 19 H 1.48504 * 109.47094 * 209.99633 * 17 15 13 20 20 H 1.48498 * 109.47221 * 329.99555 * 17 15 13 21 21 S 1.70972 * 124.91719 * 180.31033 * 2 1 3 22 22 H 1.08996 * 109.47105 * 89.97366 * 1 2 3 23 23 H 1.08996 * 109.47148 * 209.97740 * 1 2 3 24 24 H 1.08998 * 109.47275 * 329.97840 * 1 2 3 25 25 H 1.08998 * 109.46862 * 270.00077 * 5 4 3 26 26 H 1.08993 * 109.47111 * 29.99602 * 5 4 3 27 27 H 1.08992 * 109.46828 * 150.00165 * 5 4 3 28 28 H 1.09001 * 109.47438 * 329.99978 * 7 6 4 29 29 H 1.09004 * 109.47113 * 210.00234 * 7 6 4 30 30 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 31 31 H 1.09004 * 109.47043 * 299.99952 * 11 9 8 32 32 H 1.09001 * 109.47324 * 59.99585 * 11 9 8 33 33 H 0.96997 * 120.00713 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0246 0.0012 6 6 3.9353 -0.4006 0.0015 7 6 5.3574 -0.8994 0.0018 8 7 5.8184 -1.0599 1.3831 9 6 7.0686 -1.4988 1.6296 10 8 7.8123 -1.7604 0.7078 11 6 7.5426 -1.6645 3.0504 12 16 9.2506 -2.2634 3.0508 13 6 9.5395 -2.3632 4.7861 14 1 8.7591 -2.0885 5.4802 15 6 10.7706 -2.7940 5.2610 16 7 11.7220 -3.1283 4.4151 17 14 11.0766 -2.9005 7.1007 18 1 10.6952 -4.2502 7.5886 19 1 12.5161 -2.6626 7.3776 20 1 10.2620 -1.8734 7.7983 21 16 2.4856 -1.4019 -0.0076 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3634 0.8898 0.5142 25 1 4.7673 2.3009 -1.0264 26 1 4.0903 2.8791 0.5149 27 1 5.4429 1.7221 0.5153 28 1 5.9948 -0.1803 -0.5127 29 1 5.4056 -1.8599 -0.5113 30 1 5.2235 -0.8510 2.1202 31 1 7.4946 -0.7041 3.5638 32 1 6.9049 -2.3835 3.5647 33 1 12.5822 -3.4297 4.7469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266099354.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:12 Heat of formation + Delta-G solvation = -28.919504 kcal Electronic energy + Delta-G solvation = -17036.651492 eV Core-core repulsion = 14121.113740 eV Total energy + Delta-G solvation = -2915.537752 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19440 -40.46144 -36.36550 -34.58474 -33.94122 -31.60267 -30.17833 -29.38034 -27.66357 -25.52090 -23.69842 -21.86590 -20.30115 -19.67638 -18.97889 -17.87865 -17.37146 -16.87701 -16.61799 -16.20433 -15.85820 -15.62451 -14.84206 -14.65566 -14.45590 -14.37054 -14.15316 -13.93439 -13.51333 -13.29505 -13.16626 -12.96360 -12.89150 -12.84394 -12.60854 -12.21674 -11.73963 -11.16170 -11.14200 -10.69180 -10.35472 -10.27514 -10.22417 -9.65125 -8.66500 -8.34625 -6.12563 -0.46121 0.27059 0.68282 1.26269 1.42750 1.45878 1.55805 1.56591 1.67268 2.26879 2.35287 2.99615 3.07310 3.31548 3.59058 3.90758 3.98140 4.01137 4.28601 4.48045 4.50296 4.54717 4.55776 4.65012 4.69180 4.75251 4.93763 5.09741 5.25785 5.29993 5.42216 6.20011 6.39405 6.68376 7.06836 7.15344 8.74566 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.002962 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.555164 B = 9452.090205 C = 9634.311759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.053 3.947 3 N -0.503 5.503 4 C 0.088 3.912 5 C -0.084 4.084 6 C -0.269 4.269 7 C 0.208 3.792 8 N -0.711 5.711 9 C 0.539 3.461 10 O -0.560 6.560 11 C -0.130 4.130 12 S -0.147 6.147 13 C -0.547 4.547 14 H 0.082 0.918 15 C 0.013 3.987 16 N -0.911 5.911 17 Si 0.998 3.002 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.258 1.258 21 S 0.157 5.843 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.413 0.587 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.702 7.034 -7.208 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.224 4.224 3 N -0.219 5.219 4 C -0.046 4.046 5 C -0.143 4.143 6 C -0.390 4.390 7 C 0.083 3.917 8 N -0.365 5.365 9 C 0.325 3.675 10 O -0.438 6.438 11 C -0.281 4.281 12 S 0.080 5.920 13 C -0.694 4.694 14 H 0.101 0.899 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.820 3.180 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.182 1.182 21 S 0.414 5.586 22 H 0.121 0.879 23 H 0.120 0.880 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.249 0.751 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.820 5.954 -8.797 26.081 hybrid contribution 0.093 0.894 2.115 2.298 sum -23.727 6.849 -6.682 25.584 Atomic orbital electron populations 1.20677 0.82544 1.05517 1.05313 1.27731 1.03320 0.90945 1.00397 1.66284 1.04573 1.32660 1.18413 1.20514 0.90576 0.94492 0.99047 1.20480 0.95661 0.94309 1.03864 1.25490 0.99486 0.96320 1.17726 1.19385 0.87434 1.01395 0.83511 1.45864 1.13516 1.68209 1.08933 1.20028 0.81548 0.75764 0.90175 1.90705 1.55590 1.50623 1.46863 1.23372 1.01816 1.06264 0.96668 1.85554 1.09375 1.86281 1.10806 1.23203 1.02661 1.51967 0.91616 0.89940 1.26120 0.94572 0.93858 1.04583 1.70174 1.04915 1.42683 1.36991 0.84956 0.77705 0.79144 0.76191 1.19319 1.20308 1.18222 1.84010 0.96030 1.11057 1.67472 0.87906 0.87970 0.88807 0.89468 0.90028 0.90441 0.89485 0.90784 0.75058 0.87153 0.87214 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.46 71.24 0.75 0.08 16 2 C 0.05 0.86 7.39 88.52 0.65 1.52 16 3 N -0.50 -10.51 10.53 -179.41 -1.89 -12.40 16 4 C 0.09 1.80 6.74 41.52 0.28 2.08 16 5 C -0.08 -1.48 9.82 71.24 0.70 -0.78 16 6 C -0.27 -5.40 5.96 24.64 0.15 -5.25 16 7 C 0.21 4.85 5.60 85.63 0.48 5.33 16 8 N -0.71 -18.20 5.55 -466.77 -2.59 -20.79 16 9 C 0.54 19.50 7.85 87.66 0.69 20.18 16 10 O -0.56 -25.32 15.86 -3.04 -0.05 -25.37 16 11 C -0.13 -5.09 6.16 71.23 0.44 -4.65 16 12 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 13 C -0.55 -31.07 9.50 67.95 0.65 -30.43 16 14 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 15 C 0.01 0.76 5.49 84.86 0.47 1.23 16 16 N -0.91 -55.84 13.22 21.65 0.29 -55.55 16 17 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 S 0.16 2.56 23.18 -56.49 -1.31 1.25 16 22 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.39 7.35 -2.39 -0.02 1.38 16 28 H 0.09 2.08 7.43 -2.39 -0.02 2.07 16 29 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.41 8.48 8.46 -92.71 -0.78 7.70 16 31 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 32 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -75.64 319.24 0.91 -74.73 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.35 Total: 12.63 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 5.24 Total: -10.69 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -4.19 Total: -88.75 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.37 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -5.56 SS G_CDS: -2.47 Total: -8.03 kcal Total: -75.64 0.91 -74.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266099354.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.815 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds