Wall clock time and date at job start Tue Mar 31 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47433 * 274.25610 * 3 2 1 5 5 C 1.37095 * 120.00238 * 263.95739 * 4 3 2 6 6 H 1.07998 * 120.00039 * 200.21475 * 5 4 3 7 7 C 1.38953 * 119.99896 * 20.21113 * 5 4 3 8 8 N 1.31413 * 119.99930 * 21.43166 * 7 5 4 9 9 Si 1.86794 * 119.99782 * 201.42429 * 7 5 4 10 10 H 1.48503 * 109.47119 * 60.00776 * 9 7 5 11 11 H 1.48506 * 109.46942 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47347 * 300.00275 * 9 7 5 13 13 C 1.34782 * 119.99775 * 83.95255 * 4 3 2 14 14 O 1.21284 * 119.99881 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99739 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.46827 * 179.97438 * 15 13 4 17 17 H 1.08997 * 109.38383 * 304.99819 * 16 15 13 18 18 C 1.52631 * 109.38296 * 185.21223 * 16 15 13 19 19 S 1.81205 * 109.97755 * 172.90130 * 18 16 15 20 20 C 1.81170 * 103.24429 * 62.75841 * 19 18 16 21 21 C 1.52638 * 109.99067 * 297.34541 * 20 19 18 22 22 S 1.81175 * 109.38420 * 64.78172 * 16 15 13 23 23 H 1.09000 * 109.47063 * 154.25446 * 3 2 1 24 24 H 1.08999 * 109.47535 * 34.25935 * 3 2 1 25 25 H 0.96998 * 119.99763 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47174 * 299.99328 * 15 13 4 27 27 H 1.08995 * 109.47537 * 59.99400 * 15 13 4 28 28 H 1.09006 * 109.38404 * 293.14486 * 18 16 15 29 29 H 1.08998 * 109.38854 * 52.82599 * 18 16 15 30 30 H 1.08996 * 109.38615 * 177.19038 * 20 19 18 31 31 H 1.09000 * 109.29770 * 57.44935 * 20 19 18 32 32 H 1.09000 * 109.38446 * 306.68953 * 21 20 19 33 33 H 1.08999 * 109.38740 * 187.00728 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.1016 1.3774 5 6 3.4423 1.0311 2.0680 6 1 4.0916 0.9619 2.9282 7 6 2.9575 2.2681 1.6611 8 7 1.8748 2.3379 0.9196 9 14 3.8448 3.8317 2.1682 10 1 5.2354 3.8027 1.6479 11 1 3.1315 5.0087 1.6102 12 1 3.8724 3.9268 3.6499 13 6 3.2057 -1.3093 1.9657 14 8 3.6096 -1.3940 3.1061 15 6 2.8259 -2.5544 1.2063 16 6 3.0429 -3.7803 2.0958 17 1 4.0711 -3.7874 2.4574 18 6 2.7823 -5.0470 1.2851 19 16 3.2347 -6.5080 2.2568 20 6 2.1014 -6.4350 3.6683 21 6 2.3595 -5.1682 4.4798 22 16 1.9096 -3.7072 3.5074 23 1 2.9709 0.9265 -0.4464 24 1 2.9718 -0.8485 -0.5785 25 1 1.5362 3.2014 0.6359 26 1 1.7769 -2.4971 0.9158 27 1 3.4460 -2.6391 0.3139 28 1 1.7253 -5.0979 1.0234 29 1 3.3784 -5.0218 0.3729 30 1 2.2561 -7.3082 4.3020 31 1 1.0737 -6.4288 3.3052 32 1 3.4160 -5.1162 4.7431 33 1 1.7621 -5.1942 5.3911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269761572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:20 Heat of formation + Delta-G solvation = 3.062974 kcal Electronic energy + Delta-G solvation = -18384.157960 eV Core-core repulsion = 15470.007072 eV Total energy + Delta-G solvation = -2914.150888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.95902 -35.91983 -34.75719 -34.13357 -32.96704 -31.82988 -28.26064 -27.32151 -24.70993 -23.88164 -22.12306 -19.26994 -17.91603 -17.06270 -16.72887 -16.26388 -16.19023 -15.37898 -14.75289 -14.27510 -14.10439 -14.04733 -13.59107 -13.34983 -13.00575 -12.96911 -12.83549 -12.23318 -12.15674 -11.76781 -11.60223 -11.38272 -11.16178 -11.05346 -10.73566 -10.55816 -10.42853 -10.31505 -10.16652 -9.48211 -9.22904 -8.62190 -8.02172 -7.95471 -7.24521 -6.48604 -3.99166 1.50665 1.82060 2.29421 2.73109 3.13208 3.22623 3.24750 3.56009 3.80947 3.97732 4.11737 4.46713 4.58722 4.85379 4.89149 4.92468 4.99895 5.04333 5.18812 5.21026 5.44136 5.46092 5.54446 5.68396 5.71241 5.79847 6.07694 6.13233 6.45210 7.48811 7.91445 8.29408 8.74592 9.01869 9.20562 9.75053 10.57774 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.027844 B = 0.004779 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.358377 B = 5857.717910 C = 6242.223326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.243 3.757 3 C 0.222 3.778 4 N -0.444 5.444 5 C -0.313 4.313 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.877 5.877 9 Si 0.926 3.074 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.455 3.545 14 O -0.548 6.548 15 C -0.121 4.121 16 C -0.038 4.038 17 H 0.106 0.894 18 C -0.082 4.082 19 S -0.262 6.262 20 C -0.085 4.085 21 C -0.103 4.103 22 S -0.205 6.205 23 H 0.124 0.876 24 H 0.083 0.917 25 H 0.273 0.727 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -13.293 -1.790 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.075 4.075 3 C 0.094 3.906 4 N -0.166 5.166 5 C -0.440 4.440 6 H 0.125 0.875 7 C -0.171 4.171 8 N -0.516 5.516 9 Si 0.753 3.247 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.243 3.757 14 O -0.428 6.428 15 C -0.164 4.164 16 C -0.169 4.169 17 H 0.125 0.875 18 C -0.232 4.232 19 S -0.034 6.034 20 C -0.235 4.235 21 C -0.254 4.254 22 S 0.023 5.977 23 H 0.142 0.858 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.632 -13.197 -1.258 13.357 hybrid contribution 0.581 1.024 0.150 1.187 sum 2.212 -12.173 -1.109 12.422 Atomic orbital electron populations 1.80895 1.13610 1.11982 1.08543 1.29304 0.95386 0.90383 0.92446 1.18682 0.81679 1.03795 0.86425 1.43590 1.57116 1.05702 1.10170 1.19624 1.27893 0.82574 1.13866 0.87538 1.25275 0.94811 0.99630 0.97429 1.69836 1.18050 1.26616 1.37091 0.85989 0.79358 0.80198 0.79184 1.19745 1.21078 1.19835 1.19890 0.84298 0.84216 0.87333 1.90607 1.48873 1.85800 1.17542 1.21544 1.03548 0.92626 0.98654 1.23020 1.02871 0.95385 0.95630 0.87546 1.23703 1.06049 0.93157 1.00294 1.86644 1.52868 1.36625 1.27223 1.23559 1.01601 1.01184 0.97200 1.23568 1.06296 0.94422 1.01077 1.87317 1.48857 1.33917 1.27562 0.85847 0.89954 0.91647 0.89382 0.88396 0.88599 0.86619 0.87154 0.88782 0.88728 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.09 18.54 42.15 0.78 -10.31 16 2 C 0.24 5.27 12.82 -20.76 -0.27 5.00 16 3 C 0.22 4.22 4.91 -6.83 -0.03 4.19 16 4 N -0.44 -10.04 2.60 -117.93 -0.31 -10.34 16 5 C -0.31 -7.92 9.27 -14.93 -0.14 -8.05 16 6 H 0.11 2.85 7.43 -52.49 -0.39 2.46 16 7 C 0.03 0.79 4.84 -17.47 -0.08 0.71 16 8 N -0.88 -22.13 9.58 55.50 0.53 -21.60 16 9 Si 0.93 19.56 29.60 -169.99 -5.03 14.53 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 11 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.46 9.81 7.27 -10.98 -0.08 9.74 16 14 O -0.55 -13.63 14.44 5.55 0.08 -13.55 16 15 C -0.12 -1.93 3.77 -27.88 -0.10 -2.03 16 16 C -0.04 -0.57 2.03 -26.92 -0.05 -0.62 16 17 H 0.11 1.73 7.95 -51.92 -0.41 1.32 16 18 C -0.08 -0.96 5.52 36.97 0.20 -0.75 16 19 S -0.26 -3.09 22.06 -107.50 -2.37 -5.46 16 20 C -0.09 -0.89 6.25 36.97 0.23 -0.65 16 21 C -0.10 -1.27 6.25 36.97 0.23 -1.04 16 22 S -0.20 -3.43 19.82 -107.50 -2.13 -5.56 16 23 H 0.12 2.41 6.63 -51.93 -0.34 2.06 16 24 H 0.08 1.15 6.69 -51.93 -0.35 0.80 16 25 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 26 H 0.09 1.45 7.49 -51.93 -0.39 1.06 16 27 H 0.10 1.21 7.41 -51.93 -0.38 0.82 16 28 H 0.10 1.10 8.14 -51.92 -0.42 0.67 16 29 H 0.12 1.13 8.12 -51.92 -0.42 0.71 16 30 H 0.11 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.09 0.96 8.14 -51.91 -0.42 0.54 16 32 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.11 1.19 8.14 -51.92 -0.42 0.77 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -30.78 301.64 -7.93 -38.72 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.94 Total: 2.55 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.10 Total: 6.48 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 1.01 Total: -42.25 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Atomic # 16 Polarization: -6.52 SS G_CDS: -4.50 Total: -11.02 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.78 -7.93 -38.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269761572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.780 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds