Wall clock time and date at job start Tue Mar 31 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47252 * 315.51614 * 3 2 1 5 5 C 1.37095 * 120.00162 * 94.57500 * 4 3 2 6 6 H 1.08003 * 119.99854 * 321.01289 * 5 4 3 7 7 C 1.38949 * 120.00406 * 141.01512 * 5 4 3 8 8 N 1.31409 * 120.00101 * 157.77312 * 7 5 4 9 9 Si 1.86803 * 119.99904 * 337.76982 * 7 5 4 10 10 H 1.48494 * 109.46988 * 93.64734 * 9 7 5 11 11 H 1.48500 * 109.47266 * 213.64925 * 9 7 5 12 12 H 1.48504 * 109.46806 * 333.65000 * 9 7 5 13 13 C 1.34784 * 120.00162 * 274.57139 * 4 3 2 14 14 O 1.21285 * 119.99947 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99660 * 0.02562 * 13 4 3 16 16 C 1.53001 * 109.46785 * 179.97438 * 15 13 4 17 17 H 1.08996 * 109.38898 * 55.21174 * 16 15 13 18 18 C 1.52633 * 109.38254 * 174.99919 * 16 15 13 19 19 S 1.81180 * 109.99495 * 187.00695 * 18 16 15 20 20 C 1.81174 * 103.31188 * 297.38612 * 19 18 16 21 21 C 1.52633 * 109.99342 * 62.61280 * 20 19 18 22 22 S 1.81171 * 109.99370 * 293.14845 * 21 20 19 23 23 H 1.08997 * 109.47548 * 75.52250 * 3 2 1 24 24 H 1.09005 * 109.47153 * 195.51880 * 3 2 1 25 25 H 0.97004 * 119.99752 * 180.02562 * 8 7 5 26 26 H 1.08995 * 109.47197 * 299.99563 * 15 13 4 27 27 H 1.08997 * 109.47250 * 59.99479 * 15 13 4 28 28 H 1.09004 * 109.38861 * 307.16740 * 18 16 15 29 29 H 1.09007 * 109.38992 * 66.84773 * 18 16 15 30 30 H 1.09005 * 109.38244 * 182.77254 * 20 19 18 31 31 H 1.08995 * 109.38702 * 302.55880 * 20 19 18 32 32 H 1.09005 * 109.38629 * 53.30447 * 21 20 19 33 33 H 1.09004 * 109.38566 * 173.09167 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9845 0.9678 5 6 3.4152 -2.2522 0.5542 6 1 2.8050 -2.7478 -0.1864 7 6 4.5228 -2.8996 1.0878 8 7 4.5978 -4.2111 1.0522 9 14 5.9054 -1.9055 1.8558 10 1 5.6770 -1.7876 3.3183 11 1 7.2012 -2.5882 1.6107 12 1 5.9371 -0.5506 1.2489 13 6 3.2336 -0.6446 2.2649 14 8 3.6387 -1.4601 3.0660 15 6 2.8832 0.7488 2.7196 16 6 3.1267 0.8701 4.2252 17 1 4.1554 0.5880 4.4493 18 6 2.8908 2.3136 4.6618 19 16 3.3719 2.5228 6.3959 20 6 2.2416 1.4160 7.2790 21 6 2.4775 -0.0274 6.8424 22 16 1.9964 -0.2366 5.1084 23 1 2.9715 -0.2561 -0.9950 24 1 2.9709 0.9911 0.2750 25 1 5.3709 -4.6630 1.4251 26 1 3.5057 1.4707 2.1912 27 1 1.8334 0.9479 2.5044 28 1 3.4849 2.9818 4.0384 29 1 1.8347 2.5582 4.5474 30 1 2.4151 1.5025 8.3516 31 1 1.2124 1.6963 7.0552 32 1 3.5336 -0.2720 6.9568 33 1 1.8820 -0.6955 7.4647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269761574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:22 Heat of formation + Delta-G solvation = 13.898634 kcal Electronic energy + Delta-G solvation = -18673.898852 eV Core-core repulsion = 15760.217833 eV Total energy + Delta-G solvation = -2913.681018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.33659 -36.33150 -34.99987 -34.26111 -33.05440 -32.13577 -28.42080 -27.67674 -24.44265 -23.89535 -22.09547 -19.77363 -17.91598 -17.45497 -16.96383 -16.38983 -16.02319 -15.52136 -15.12616 -14.28405 -14.17047 -14.03414 -13.68631 -13.57493 -13.27050 -13.10541 -12.77742 -12.60832 -12.47235 -12.33633 -12.05689 -11.74193 -11.33032 -11.16123 -10.97911 -10.74705 -10.30598 -10.15105 -10.02738 -9.54617 -8.69875 -8.59713 -8.01721 -7.93125 -7.27289 -6.26116 -4.03615 1.45579 1.76242 2.24794 2.66581 2.99513 3.14554 3.21116 3.37606 3.61363 3.71418 4.20199 4.44788 4.52144 4.55064 4.68464 4.84388 4.88082 4.94711 5.11844 5.16255 5.31691 5.40619 5.42440 5.46493 5.61306 5.66826 5.72812 5.85738 5.99646 7.73419 7.76785 7.91581 8.60891 8.76326 9.31278 9.61063 10.78291 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.006830 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.723042 B = 4098.779853 C = 4852.143108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.201 3.799 3 C 0.192 3.808 4 N -0.460 5.460 5 C -0.361 4.361 6 H 0.095 0.905 7 C 0.098 3.902 8 N -0.857 5.857 9 Si 0.909 3.091 10 H -0.249 1.249 11 H -0.309 1.309 12 H -0.281 1.281 13 C 0.445 3.555 14 O -0.502 6.502 15 C -0.123 4.123 16 C -0.043 4.043 17 H 0.106 0.894 18 C -0.081 4.081 19 S -0.260 6.260 20 C -0.085 4.085 21 C -0.103 4.103 22 S -0.203 6.203 23 H 0.125 0.875 24 H 0.102 0.898 25 H 0.274 0.726 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 14.447 7.111 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.119 4.119 3 C 0.064 3.936 4 N -0.184 5.184 5 C -0.486 4.486 6 H 0.113 0.887 7 C -0.112 4.112 8 N -0.491 5.491 9 Si 0.739 3.261 10 H -0.175 1.175 11 H -0.238 1.238 12 H -0.206 1.206 13 C 0.234 3.766 14 O -0.381 6.381 15 C -0.166 4.166 16 C -0.174 4.174 17 H 0.124 0.876 18 C -0.232 4.232 19 S -0.032 6.032 20 C -0.235 4.235 21 C -0.253 4.253 22 S 0.026 5.974 23 H 0.143 0.857 24 H 0.120 0.880 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.134 0.866 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.209 13.824 7.605 15.931 hybrid contribution 1.082 0.348 0.250 1.164 sum -1.127 14.172 7.855 16.243 Atomic orbital electron populations 1.81088 1.13467 1.08976 1.08760 1.30304 0.96170 0.92558 0.92830 1.19141 0.80498 0.95480 0.98432 1.43528 1.59593 1.11288 1.04037 1.18778 1.12538 0.88192 1.29092 0.88728 1.25226 0.97516 0.94925 0.93568 1.69768 1.29452 1.08079 1.41763 0.86471 0.78410 0.79258 0.81931 1.17454 1.23813 1.20615 1.20122 0.84071 0.89434 0.82979 1.90635 1.45197 1.50979 1.51292 1.21588 1.03614 0.98363 0.93066 1.23056 1.03222 0.93872 0.97295 0.87578 1.23679 1.05967 0.98917 0.94602 1.86669 1.52103 1.59613 1.04808 1.23566 1.01637 0.95555 1.02750 1.23578 1.06417 0.97866 0.97479 1.87240 1.47598 1.61708 1.00877 0.85675 0.87988 0.91637 0.88273 0.89144 0.86637 0.88549 0.87055 0.88746 0.88663 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.41 18.54 42.15 0.78 -7.63 16 2 C 0.20 3.38 15.17 -20.76 -0.31 3.07 16 3 C 0.19 2.90 5.65 -6.83 -0.04 2.86 16 4 N -0.46 -9.79 2.19 -117.93 -0.26 -10.05 16 5 C -0.36 -9.41 9.72 -14.93 -0.15 -9.56 16 6 H 0.10 2.63 8.06 -52.48 -0.42 2.20 16 7 C 0.10 2.72 4.78 -17.47 -0.08 2.63 16 8 N -0.86 -25.20 13.96 55.50 0.77 -24.42 16 9 Si 0.91 22.35 24.84 -169.99 -4.22 18.12 16 10 H -0.25 -6.43 6.12 56.52 0.35 -6.08 16 11 H -0.31 -7.62 7.11 56.52 0.40 -7.22 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.44 9.41 5.59 -10.98 -0.06 9.35 16 14 O -0.50 -12.64 9.83 5.55 0.05 -12.58 16 15 C -0.12 -1.88 3.76 -27.88 -0.10 -1.99 16 16 C -0.04 -0.65 2.03 -26.92 -0.05 -0.70 16 17 H 0.11 1.81 7.96 -51.92 -0.41 1.40 16 18 C -0.08 -0.93 5.53 36.97 0.20 -0.73 16 19 S -0.26 -3.09 22.05 -107.50 -2.37 -5.46 16 20 C -0.08 -0.88 6.25 36.97 0.23 -0.65 16 21 C -0.10 -1.29 6.25 36.97 0.23 -1.06 16 22 S -0.20 -3.38 19.80 -107.50 -2.13 -5.51 16 23 H 0.13 1.64 8.00 -51.93 -0.42 1.23 16 24 H 0.10 1.09 6.63 -51.93 -0.34 0.75 16 25 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.10 1.16 7.40 -51.93 -0.38 0.78 16 27 H 0.09 1.31 7.60 -51.93 -0.39 0.92 16 28 H 0.12 1.11 8.13 -51.92 -0.42 0.68 16 29 H 0.10 1.04 8.14 -51.91 -0.42 0.62 16 30 H 0.11 0.94 8.14 -51.91 -0.42 0.52 16 31 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.09 1.27 8.14 -51.91 -0.42 0.85 16 33 H 0.11 1.24 8.14 -51.91 -0.42 0.81 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -33.43 299.07 -7.10 -40.53 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.10 Total: -0.71 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.14 Total: 3.21 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 1.30 Total: -42.11 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.05 Total: -12.58 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.22 Total: 18.12 kcal Atomic # 16 Polarization: -6.47 SS G_CDS: -4.50 Total: -10.97 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.43 -7.10 -40.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269761574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.433 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds