Wall clock time and date at job start Tue Mar 31 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47252 * 315.51614 * 3 2 1 5 5 C 1.37095 * 120.00162 * 94.57500 * 4 3 2 6 6 H 1.08003 * 119.99854 * 321.01289 * 5 4 3 7 7 C 1.38949 * 120.00406 * 141.01512 * 5 4 3 8 8 N 1.31409 * 120.00101 * 157.77312 * 7 5 4 9 9 Si 1.86803 * 119.99904 * 337.76982 * 7 5 4 10 10 H 1.48494 * 109.46988 * 93.64734 * 9 7 5 11 11 H 1.48500 * 109.47266 * 213.64925 * 9 7 5 12 12 H 1.48504 * 109.46806 * 333.65000 * 9 7 5 13 13 C 1.34784 * 120.00162 * 274.57139 * 4 3 2 14 14 O 1.21285 * 119.99947 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99660 * 0.02562 * 13 4 3 16 16 C 1.53001 * 109.46785 * 179.97438 * 15 13 4 17 17 H 1.08996 * 109.38898 * 55.21174 * 16 15 13 18 18 C 1.52633 * 109.38254 * 174.99919 * 16 15 13 19 19 S 1.81180 * 109.99495 * 187.00695 * 18 16 15 20 20 C 1.81174 * 103.31188 * 297.38612 * 19 18 16 21 21 C 1.52633 * 109.99342 * 62.61280 * 20 19 18 22 22 S 1.81171 * 109.99370 * 293.14845 * 21 20 19 23 23 H 1.08997 * 109.47548 * 75.52250 * 3 2 1 24 24 H 1.09005 * 109.47153 * 195.51880 * 3 2 1 25 25 H 0.97004 * 119.99752 * 180.02562 * 8 7 5 26 26 H 1.08995 * 109.47197 * 299.99563 * 15 13 4 27 27 H 1.08997 * 109.47250 * 59.99479 * 15 13 4 28 28 H 1.09004 * 109.38861 * 307.16740 * 18 16 15 29 29 H 1.09007 * 109.38992 * 66.84773 * 18 16 15 30 30 H 1.09005 * 109.38244 * 182.77254 * 20 19 18 31 31 H 1.08995 * 109.38702 * 302.55880 * 20 19 18 32 32 H 1.09005 * 109.38629 * 53.30447 * 21 20 19 33 33 H 1.09004 * 109.38566 * 173.09167 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9845 0.9678 5 6 3.4152 -2.2522 0.5542 6 1 2.8050 -2.7478 -0.1864 7 6 4.5228 -2.8996 1.0878 8 7 4.5978 -4.2111 1.0522 9 14 5.9054 -1.9055 1.8558 10 1 5.6770 -1.7876 3.3183 11 1 7.2012 -2.5882 1.6107 12 1 5.9371 -0.5506 1.2489 13 6 3.2336 -0.6446 2.2649 14 8 3.6387 -1.4601 3.0660 15 6 2.8832 0.7488 2.7196 16 6 3.1267 0.8701 4.2252 17 1 4.1554 0.5880 4.4493 18 6 2.8908 2.3136 4.6618 19 16 3.3719 2.5228 6.3959 20 6 2.2416 1.4160 7.2790 21 6 2.4775 -0.0274 6.8424 22 16 1.9964 -0.2366 5.1084 23 1 2.9715 -0.2561 -0.9950 24 1 2.9709 0.9911 0.2750 25 1 5.3709 -4.6630 1.4251 26 1 3.5057 1.4707 2.1912 27 1 1.8334 0.9479 2.5044 28 1 3.4849 2.9818 4.0384 29 1 1.8347 2.5582 4.5474 30 1 2.4151 1.5025 8.3516 31 1 1.2124 1.6963 7.0552 32 1 3.5336 -0.2720 6.9568 33 1 1.8820 -0.6955 7.4647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269761574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:22 Heat of formation + Delta-G solvation = -8.101869 kcal Electronic energy + Delta-G solvation = -18674.852865 eV Core-core repulsion = 15760.217833 eV Total energy + Delta-G solvation = -2914.635032 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95904 -37.78211 -36.37545 -35.70673 -34.23756 -33.88701 -29.76462 -29.07319 -26.09834 -24.84105 -23.37859 -21.38037 -19.57752 -18.79645 -18.22416 -17.55398 -17.48081 -16.87194 -16.58869 -15.72357 -15.39671 -15.18395 -14.97917 -14.90224 -14.70537 -14.38845 -14.20309 -14.05730 -13.82441 -13.66860 -13.22548 -13.18857 -12.86772 -12.51315 -12.43909 -12.14939 -11.89666 -11.68659 -11.21089 -10.68816 -10.59605 -10.38013 -9.78458 -8.93935 -8.55968 -8.32241 -6.09575 0.56100 0.69473 1.32857 1.34959 1.44787 1.58957 1.61863 1.64076 1.83790 2.04183 2.53826 2.74886 3.09429 3.33224 3.50625 3.63269 3.68679 3.98576 4.00576 4.13706 4.29312 4.35677 4.38190 4.55698 4.59420 4.61693 4.72039 4.74798 4.85325 5.74424 5.85403 6.58778 6.76945 6.91821 7.35183 7.86204 8.74144 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.006830 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.723042 B = 4098.779853 C = 4852.143108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.219 3.781 3 C 0.191 3.809 4 N -0.477 5.477 5 C -0.351 4.351 6 H 0.063 0.937 7 C 0.046 3.954 8 N -0.913 5.913 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.318 1.318 12 H -0.239 1.239 13 C 0.441 3.559 14 O -0.547 6.547 15 C -0.116 4.116 16 C -0.027 4.027 17 H 0.083 0.917 18 C -0.072 4.072 19 S -0.277 6.277 20 C -0.076 4.076 21 C -0.083 4.083 22 S -0.290 6.290 23 H 0.148 0.852 24 H 0.164 0.836 25 H 0.270 0.730 26 H 0.152 0.848 27 H 0.105 0.895 28 H 0.145 0.855 29 H 0.108 0.892 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 18.400 7.368 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.099 4.099 3 C 0.065 3.935 4 N -0.201 5.201 5 C -0.477 4.477 6 H 0.081 0.919 7 C -0.158 4.158 8 N -0.550 5.550 9 Si 0.793 3.207 10 H -0.202 1.202 11 H -0.249 1.249 12 H -0.162 1.162 13 C 0.232 3.768 14 O -0.428 6.428 15 C -0.158 4.158 16 C -0.159 4.159 17 H 0.101 0.899 18 C -0.222 4.222 19 S -0.049 6.049 20 C -0.226 4.226 21 C -0.233 4.233 22 S -0.062 6.062 23 H 0.166 0.834 24 H 0.181 0.819 25 H 0.079 0.921 26 H 0.169 0.831 27 H 0.123 0.877 28 H 0.163 0.837 29 H 0.126 0.874 30 H 0.154 0.846 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.946 17.834 7.829 19.573 hybrid contribution 0.874 -0.904 0.232 1.279 sum -1.072 16.929 8.061 18.781 Atomic orbital electron populations 1.81120 1.14854 1.10337 1.10104 1.30609 0.96395 0.91317 0.91605 1.19671 0.78864 0.96617 0.98310 1.43659 1.59965 1.10956 1.05562 1.18624 1.11134 0.90640 1.27351 0.91909 1.25973 1.00002 0.95437 0.94427 1.69892 1.30367 1.09875 1.44877 0.85557 0.75460 0.80018 0.79701 1.20168 1.24852 1.16165 1.21209 0.81799 0.91412 0.82361 1.90615 1.46704 1.52996 1.52521 1.21667 1.05406 0.95116 0.93642 1.23008 1.00852 0.95255 0.96760 0.89897 1.23639 1.07304 0.96606 0.94616 1.86769 1.52940 1.59671 1.05496 1.23558 1.01731 0.93407 1.03870 1.23548 1.05673 0.99946 0.94155 1.87454 1.49173 1.64110 1.05485 0.83417 0.81894 0.92060 0.83080 0.87688 0.83726 0.87388 0.84605 0.87930 0.89813 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -17.55 18.54 20.01 0.37 -17.18 16 2 C 0.22 6.78 15.17 89.44 1.36 8.14 16 3 C 0.19 4.94 5.65 84.57 0.48 5.42 16 4 N -0.48 -19.21 2.19 -645.42 -1.41 -20.63 16 5 C -0.35 -18.39 9.72 84.04 0.82 -17.57 16 6 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 7 C 0.05 2.59 4.78 84.93 0.41 3.00 16 8 N -0.91 -56.05 13.96 21.66 0.30 -55.74 16 9 Si 0.96 46.27 24.84 68.60 1.70 47.98 16 10 H -0.27 -14.23 6.12 99.48 0.61 -13.62 16 11 H -0.32 -15.50 7.11 99.48 0.71 -14.79 16 12 H -0.24 -9.62 7.11 99.48 0.71 -8.91 16 13 C 0.44 17.67 5.59 87.66 0.49 18.16 16 14 O -0.55 -27.43 9.83 -3.04 -0.03 -27.46 16 15 C -0.12 -3.05 3.76 29.85 0.11 -2.94 16 16 C -0.03 -0.75 2.03 30.47 0.06 -0.69 16 17 H 0.08 2.66 7.96 -2.40 -0.02 2.64 16 18 C -0.07 -1.35 5.53 71.86 0.40 -0.95 16 19 S -0.28 -5.73 22.05 -56.49 -1.25 -6.97 16 20 C -0.08 -1.37 6.25 71.86 0.45 -0.92 16 21 C -0.08 -1.98 6.25 71.86 0.45 -1.53 16 22 S -0.29 -9.44 19.80 -56.49 -1.12 -10.56 16 23 H 0.15 3.25 8.00 -2.39 -0.02 3.23 16 24 H 0.16 2.29 6.63 -2.38 -0.02 2.28 16 25 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 26 H 0.15 2.43 7.40 -2.39 -0.02 2.42 16 27 H 0.10 2.56 7.60 -2.39 -0.02 2.54 16 28 H 0.14 1.92 8.13 -2.39 -0.02 1.90 16 29 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.10 1.75 8.14 -2.40 -0.02 1.73 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -78.64 299.07 4.61 -74.03 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.02 Total: 6.44 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 5.02 Total: 10.11 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -0.74 Total: -93.55 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.03 Total: -27.46 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.70 Total: 47.98 kcal Atomic # 16 Polarization: -15.17 SS G_CDS: -2.36 Total: -17.54 kcal Total: -78.64 4.61 -74.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269761574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.928 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds