Wall clock time and date at job start Tue Mar 31 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47291 * 45.10201 * 3 2 1 5 5 N 1.46502 * 109.47302 * 180.16785 * 4 3 2 6 6 C 1.46501 * 119.99744 * 275.04836 * 5 4 3 7 7 C 1.50706 * 109.46924 * 275.95159 * 6 5 4 8 8 H 1.07998 * 120.00126 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99602 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00661 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99759 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46892 * 60.00154 * 11 9 7 13 13 H 1.48500 * 109.47426 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47165 * 300.00181 * 11 9 7 15 15 C 1.34774 * 120.00324 * 95.04610 * 5 4 3 16 16 O 1.21280 * 119.99627 * 5.02376 * 15 5 4 17 17 C 1.50701 * 120.00059 * 185.03297 * 15 5 4 18 18 S 1.82979 * 110.81338 * 187.45948 * 17 15 5 19 19 C 1.81594 * 102.07478 * 142.79883 * 18 17 15 20 20 C 1.53271 * 110.67952 * 2.63464 * 19 18 17 21 21 S 1.82804 * 107.36076 * 330.44174 * 20 19 18 22 22 H 1.09005 * 109.46995 * 285.10074 * 3 2 1 23 23 H 1.08999 * 109.46890 * 165.10589 * 3 2 1 24 24 H 1.08999 * 109.47280 * 60.16992 * 4 3 2 25 25 H 1.08999 * 109.47113 * 300.16652 * 4 3 2 26 26 H 1.09001 * 109.47718 * 35.95521 * 6 5 4 27 27 H 1.09004 * 109.47297 * 155.95431 * 6 5 4 28 28 H 0.97000 * 120.00304 * 179.97438 * 10 9 7 29 29 H 1.08998 * 110.87804 * 63.96397 * 17 15 5 30 30 H 1.09001 * 109.22778 * 122.93886 * 19 18 17 31 31 H 1.09003 * 109.22903 * 242.33386 * 19 18 17 32 32 H 1.09003 * 109.87917 * 89.92827 * 20 19 18 33 33 H 1.08998 * 109.87594 * 211.06489 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0172 -1.0218 5 7 4.5835 -1.0195 -1.0189 6 6 5.3190 -0.0457 -1.8295 7 6 5.4445 -0.5595 -3.2407 8 1 5.0186 -1.5156 -3.5072 9 6 6.1021 0.1914 -4.1918 10 7 6.6203 1.3558 -3.8675 11 14 6.2571 -0.4451 -5.9411 12 1 4.9029 -0.6465 -6.5164 13 1 7.0028 0.5418 -6.7629 14 1 6.9894 -1.7371 -5.9348 15 6 5.2546 -1.9172 -0.2706 16 8 4.6492 -2.7806 0.3286 17 6 6.7572 -1.8481 -0.1781 18 16 7.4213 -3.3017 0.7129 19 6 8.9544 -3.6391 -0.2000 20 6 9.1714 -2.5928 -1.2988 21 16 7.5220 -2.0193 -1.8394 22 1 2.9715 -0.2669 0.9922 23 1 2.9709 0.9940 -0.2641 24 1 2.7576 -0.7480 -2.0144 25 1 2.7532 -2.0101 -0.7592 26 1 4.7817 0.9027 -1.8346 27 1 6.3129 0.1021 -1.4069 28 1 7.0833 1.8839 -4.5366 29 1 7.0747 -0.9219 0.3009 30 1 9.7968 -3.6138 0.4912 31 1 8.8920 -4.6283 -0.6535 32 1 9.7448 -1.7540 -0.9040 33 1 9.7000 -3.0423 -2.1394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270423259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:26 Heat of formation + Delta-G solvation = -10.468738 kcal Electronic energy + Delta-G solvation = -18378.669285 eV Core-core repulsion = 15463.931619 eV Total energy + Delta-G solvation = -2914.737667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86101 -37.95792 -36.84166 -34.65384 -34.09315 -32.95334 -30.39925 -28.99589 -25.26318 -24.75059 -24.45460 -20.52384 -18.96989 -18.39225 -18.34357 -17.87889 -17.36941 -16.56981 -16.27665 -16.09793 -15.96403 -15.49720 -14.86996 -14.63615 -14.46535 -14.25026 -13.71384 -13.69580 -13.48012 -13.40351 -13.17290 -12.97923 -12.73080 -12.67319 -12.55706 -12.09853 -11.81383 -11.67622 -11.51573 -11.04167 -10.51918 -10.29811 -9.57065 -8.84267 -8.41933 -8.08556 -6.11052 0.17491 0.43122 0.94830 1.45707 1.49630 1.53465 1.60311 1.78694 1.81275 1.83680 2.18060 2.50043 3.12076 3.29629 3.49430 3.68303 3.90867 3.96051 4.10478 4.15365 4.54750 4.55990 4.66811 4.74931 4.83634 4.94999 5.03457 5.34797 5.69112 5.85758 6.16538 6.45360 6.54994 6.87971 7.13740 7.52352 8.97357 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.010781 B = 0.008928 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.472126 B = 3135.537756 C = 5334.604533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.245 3.755 3 C -0.030 4.030 4 C 0.123 3.877 5 N -0.585 5.585 6 C 0.240 3.760 7 C -0.508 4.508 8 H 0.048 0.952 9 C 0.049 3.951 10 N -0.903 5.903 11 Si 0.925 3.075 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.545 3.455 16 O -0.556 6.556 17 C -0.043 4.043 18 S -0.245 6.245 19 C -0.078 4.078 20 C -0.126 4.126 21 S -0.165 6.165 22 H 0.123 0.877 23 H 0.133 0.867 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.264 0.736 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 -3.406 6.159 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.072 4.072 3 C -0.071 4.071 4 C -0.002 4.002 5 N -0.315 5.315 6 C 0.119 3.881 7 C -0.550 4.550 8 H 0.066 0.934 9 C -0.153 4.153 10 N -0.542 5.542 11 Si 0.753 3.247 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.203 1.203 15 C 0.329 3.671 16 O -0.436 6.436 17 C -0.284 4.284 18 S -0.021 6.021 19 C -0.229 4.229 20 C -0.276 4.276 21 S 0.064 5.936 22 H 0.141 0.859 23 H 0.151 0.849 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.161 0.839 30 H 0.148 0.852 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.886 -4.053 6.208 8.371 hybrid contribution 1.481 0.334 -1.127 1.891 sum 5.367 -3.719 5.081 8.273 Atomic orbital electron populations 1.81211 1.14322 1.10641 1.10545 1.29191 0.95071 0.91446 0.91499 1.19692 0.80129 1.03969 1.03294 1.21227 0.79433 0.99681 0.99821 1.47998 1.06453 1.33578 1.43463 1.19472 0.92428 0.87132 0.89041 1.21288 1.34931 1.03901 0.94891 0.93415 1.25141 0.94924 0.94754 1.00493 1.69928 1.36810 1.12280 1.35189 0.86119 0.78106 0.78267 0.82237 1.20382 1.21138 1.20292 1.19236 0.87356 0.81260 0.79200 1.90671 1.69120 1.35982 1.47823 1.25909 0.99275 1.03301 0.99886 1.87274 1.27951 1.40086 1.46764 1.24034 0.96470 1.02840 0.99534 1.24530 1.00058 1.01202 1.01763 1.90357 1.11682 1.85963 1.05593 0.85877 0.84879 0.89268 0.90217 0.94360 0.93554 0.92643 0.83888 0.85150 0.87387 0.87564 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.78 18.54 20.01 0.37 -15.41 16 2 C 0.25 6.59 15.43 89.44 1.38 7.97 16 3 C -0.03 -0.68 6.02 28.79 0.17 -0.51 16 4 C 0.12 3.68 5.47 86.38 0.47 4.16 16 5 N -0.58 -20.57 2.46 -826.15 -2.03 -22.60 16 6 C 0.24 9.57 4.67 85.63 0.40 9.97 16 7 C -0.51 -23.23 6.87 25.60 0.18 -23.05 16 8 H 0.05 2.32 7.81 -2.91 -0.02 2.30 16 9 C 0.05 2.33 5.46 84.65 0.46 2.80 16 10 N -0.90 -44.65 13.29 21.45 0.28 -44.36 16 11 Si 0.93 39.53 29.54 68.60 2.03 41.56 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 15 C 0.55 20.10 7.20 87.66 0.63 20.73 16 16 O -0.56 -22.73 15.50 -3.03 -0.05 -22.78 16 17 C -0.04 -1.42 2.94 71.24 0.21 -1.21 16 18 S -0.25 -7.45 21.55 -46.19 -1.00 -8.45 16 19 C -0.08 -1.68 6.79 72.07 0.49 -1.20 16 20 C -0.13 -2.97 6.97 72.07 0.50 -2.47 16 21 S -0.17 -5.82 17.80 -46.19 -0.82 -6.64 16 22 H 0.12 2.53 8.14 -2.38 -0.02 2.52 16 23 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.09 2.73 8.11 -2.39 -0.02 2.71 16 25 H 0.08 2.52 7.22 -2.39 -0.02 2.50 16 26 H 0.04 1.55 8.11 -2.39 -0.02 1.53 16 27 H 0.05 1.92 5.54 -2.38 -0.01 1.91 16 28 H 0.26 12.74 8.31 -92.71 -0.77 11.97 16 29 H 0.14 4.34 7.83 -2.39 -0.02 4.33 16 30 H 0.13 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -58.69 309.61 4.81 -53.89 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.12 Total: 7.62 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 4.90 Total: 17.18 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -1.38 Total: -82.37 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Atomic # 16 Polarization: -13.27 SS G_CDS: -1.82 Total: -15.09 kcal Total: -58.69 4.81 -53.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270423259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.418 kcal (2) G-P(sol) polarization free energy of solvation -58.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds