Wall clock time and date at job start Tue Mar 31 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00348 * 3 2 1 7 7 C 1.37884 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00191 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21529 * 120.00356 * 359.97438 * 13 12 11 15 15 C 1.47996 * 119.99790 * 179.97438 * 13 12 11 16 16 C 1.39952 * 120.93718 * 359.72608 * 15 13 12 17 17 C 1.37986 * 119.06475 * 179.72765 * 16 15 13 18 18 N 1.31893 * 121.00108 * 0.55199 * 17 16 15 19 19 C 1.31792 * 122.07284 * 359.72058 * 18 17 16 20 20 Cl 1.73605 * 119.58943 * 179.97438 * 19 18 17 21 21 C 1.38705 * 120.81916 * 359.97438 * 19 18 17 22 22 F 1.35105 * 120.54716 * 179.97438 * 21 19 18 23 23 H 0.96997 * 120.00125 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 25 25 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 26 26 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 27 27 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 28 28 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 29 29 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 30 30 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 31 31 H 1.08000 * 120.46434 * 359.97438 * 16 15 13 32 32 H 1.07998 * 119.49930 * 180.29360 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0398 -4.0179 -0.0027 13 6 7.3649 -4.2642 -0.0033 14 8 8.1547 -3.3405 -0.0039 15 6 7.8582 -5.6595 -0.0032 16 6 6.9662 -6.7380 0.0032 17 6 7.4683 -8.0232 -0.0027 18 7 8.7686 -8.2445 -0.0034 19 6 9.6459 -7.2610 -0.0039 20 17 11.3431 -7.6263 -0.0040 21 6 9.2300 -5.9378 -0.0043 22 9 10.1341 -4.9339 -0.0043 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6805 0.8888 25 1 3.8745 -0.6801 -0.8912 26 1 3.6578 -3.1506 -0.8908 27 1 3.6585 -3.1503 0.8892 28 1 5.9155 -2.1225 0.8873 29 1 5.9141 -2.1231 -0.8927 30 1 5.4094 -4.7551 -0.0026 31 1 5.8999 -6.5666 0.0086 32 1 6.7864 -8.8606 -0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270692352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:14 Heat of formation + Delta-G solvation = -58.189373 kcal Electronic energy + Delta-G solvation = -19088.101781 eV Core-core repulsion = 15603.037909 eV Total energy + Delta-G solvation = -3485.063871 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.37680 -40.96666 -39.43415 -37.19883 -35.78632 -33.80526 -33.04828 -31.51384 -31.26875 -27.61682 -25.44949 -24.14495 -22.89254 -21.20217 -20.42230 -18.71214 -18.07778 -17.74009 -16.83731 -16.58001 -16.26237 -15.67595 -15.52307 -15.05484 -14.46136 -14.37650 -14.17015 -14.11106 -13.68054 -12.92038 -12.75618 -12.34145 -12.14164 -12.02941 -11.84240 -11.21771 -10.97558 -10.81926 -10.46693 -10.29946 -10.09929 -9.89695 -9.74585 -9.45244 -9.30535 -9.14050 -8.61501 -6.12270 -4.11618 -0.08318 0.11928 1.13709 2.39895 2.76934 3.07893 3.26979 3.29519 3.35089 3.38426 3.79554 3.93962 4.01424 4.35631 4.39015 4.81936 5.02486 5.07989 5.21711 5.37750 5.50022 5.69134 5.86039 6.07972 6.30510 6.49040 6.65842 6.90232 7.13156 7.25638 7.26744 7.68873 7.90841 8.43127 8.90931 9.49728 11.00849 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.042278 B = 0.002799 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.117507 B =10001.578419 C =10637.945707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.711 5.711 13 C 0.551 3.449 14 O -0.515 6.515 15 C -0.109 4.109 16 C -0.109 4.109 17 C 0.106 3.894 18 N -0.436 5.436 19 C 0.136 3.864 20 Cl -0.004 7.004 21 C 0.123 3.877 22 F -0.091 7.091 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.400 0.600 31 H 0.161 0.839 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.373 -17.650 0.024 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.363 5.363 13 C 0.335 3.665 14 O -0.391 6.391 15 C -0.121 4.121 16 C -0.129 4.129 17 C -0.051 4.051 18 N -0.147 5.147 19 C -0.030 4.030 20 Cl 0.025 6.975 21 C 0.099 3.901 22 F -0.069 7.069 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.236 0.764 31 H 0.178 0.822 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 18.259 -17.656 0.027 25.399 hybrid contribution -0.020 1.447 -0.022 1.447 sum 18.240 -16.209 0.005 24.401 Atomic orbital electron populations 1.69904 1.06330 1.27048 1.50768 1.25027 0.94750 0.99262 0.94388 0.86780 0.80399 0.83518 0.78629 1.20210 1.21327 1.18889 1.21068 0.89209 0.94531 1.51393 0.90979 1.19504 0.97370 0.91250 0.96778 1.21728 0.90162 1.01373 1.01911 1.21804 0.96481 0.80104 1.02542 1.46040 1.05728 1.10767 1.73727 1.17762 0.83420 0.86919 0.78363 1.90876 1.55126 1.44650 1.48413 1.20700 0.91808 0.96308 1.03307 1.22515 1.01647 0.92136 0.96628 1.22786 0.89928 0.96774 0.95628 1.66994 1.03334 1.34325 1.10073 1.21737 0.89987 0.87753 1.03541 1.98447 1.07482 1.95274 1.96325 1.18253 0.86644 0.84590 1.00605 1.91675 1.64856 1.58023 1.92355 0.92625 0.96229 0.96659 0.91932 0.91898 0.91185 0.91198 0.76426 0.82195 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.23 9.66 -34.44 -0.33 -14.56 16 8 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -1.93 5.27 -26.73 -0.14 -2.07 16 11 C 0.11 1.68 5.67 -4.04 -0.02 1.66 16 12 N -0.71 -8.45 5.51 -61.20 -0.34 -8.79 16 13 C 0.55 7.38 7.79 -12.26 -0.10 7.28 16 14 O -0.51 -9.01 15.48 5.34 0.08 -8.93 16 15 C -0.11 -1.15 5.91 -104.60 -0.62 -1.77 16 16 C -0.11 -0.72 9.61 -39.03 -0.38 -1.09 16 17 C 0.11 0.66 11.16 -17.62 -0.20 0.47 16 18 N -0.44 -4.05 10.31 -10.36 -0.11 -4.15 16 19 C 0.14 1.42 7.28 -17.40 -0.13 1.30 16 20 Cl 0.00 -0.04 28.78 -51.86 -1.49 -1.53 16 21 C 0.12 1.43 7.30 -38.76 -0.28 1.15 16 22 F -0.09 -1.25 15.29 2.25 0.03 -1.21 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 25 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.40 3.40 6.61 -40.82 -0.27 3.13 16 31 H 0.16 0.55 6.54 -52.49 -0.34 0.20 16 32 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -33.13 301.56 -6.65 -39.78 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -3.08 Total: -3.72 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -2.40 Total: -6.19 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.33 Total: -39.27 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.03 Total: -1.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.49 Total: -1.53 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.13 -6.65 -39.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270692352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.405 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds