Wall clock time and date at job start Tue Mar 31 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99847 * 2 1 4 4 H 1.48504 * 109.47091 * 239.99560 * 3 2 1 5 5 H 1.48495 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47271 * 119.99791 * 3 2 1 7 7 C 1.37878 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46926 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46938 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99617 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00402 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99412 * 180.27253 * 12 11 10 15 15 C 1.40134 * 119.99546 * 175.27053 * 14 12 11 16 16 C 1.38790 * 120.06443 * 34.64771 * 15 14 12 17 17 C 1.38144 * 119.96810 * 179.72523 * 16 15 14 18 18 C 1.38380 * 120.09561 * 0.56588 * 17 16 15 19 19 Cl 1.73611 * 119.93552 * 179.72359 * 18 17 16 20 20 C 1.38364 * 120.13231 * 359.70685 * 18 17 16 21 21 C 1.38312 * 120.02749 * 359.97438 * 20 18 17 22 22 F 1.35096 * 120.04711 * 180.02562 * 21 20 18 23 23 H 0.97001 * 120.00387 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47586 * 59.99753 * 9 7 2 25 25 H 1.09002 * 109.47226 * 299.99207 * 9 7 2 26 26 H 1.08996 * 109.47518 * 59.99891 * 10 9 7 27 27 H 1.09007 * 109.47315 * 299.99747 * 10 9 7 28 28 H 0.96992 * 120.00666 * 0.02562 * 11 10 9 29 29 H 0.96997 * 120.00597 * 355.28051 * 14 12 11 30 30 H 1.07995 * 120.01489 * 0.02562 * 16 15 14 31 31 H 1.08001 * 119.95361 * 180.27127 * 17 16 15 32 32 H 1.07994 * 119.99096 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9307 0.0012 12 6 2.1868 -6.0979 0.0007 13 8 3.4027 -6.0979 0.0003 14 7 1.5129 -7.2651 -0.0042 15 6 2.2104 -8.4764 -0.1047 16 6 3.4573 -8.6121 0.4894 17 6 4.1407 -9.8088 0.3939 18 6 3.5889 -10.8692 -0.3033 19 17 4.4545 -12.3691 -0.4268 20 6 2.3486 -10.7366 -0.9020 21 6 1.6569 -9.5429 -0.8042 22 9 0.4455 -9.4132 -1.3881 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8720 -3.6043 0.8904 27 1 2.8720 -3.6043 -0.8895 28 1 0.5429 -4.9308 0.0011 29 1 0.5452 -7.2668 0.0616 30 1 3.8910 -7.7840 1.0302 31 1 5.1090 -9.9156 0.8600 32 1 1.9199 -11.5657 -1.4452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273102250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:36 Heat of formation + Delta-G solvation = -81.589962 kcal Electronic energy + Delta-G solvation = -19092.479650 eV Core-core repulsion = 15606.401053 eV Total energy + Delta-G solvation = -3486.078597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.06118 -41.73432 -39.84783 -37.63196 -36.70475 -35.79765 -34.84495 -31.96925 -31.70216 -30.05030 -26.76198 -24.61893 -23.79344 -22.83077 -22.07182 -19.91111 -19.05913 -18.53596 -18.33765 -17.52827 -16.90036 -16.59295 -16.53978 -16.45422 -15.96963 -15.32943 -15.17985 -15.00397 -14.51293 -14.28011 -14.24908 -13.44069 -13.23270 -13.09242 -12.92326 -12.59828 -12.53967 -12.23633 -12.05482 -11.68551 -11.53185 -11.36332 -11.15303 -10.59956 -10.14662 -10.03105 -9.19218 -8.23696 -6.33918 -0.19290 -0.00237 0.98522 1.39697 1.45017 1.45156 1.53590 1.88407 2.40143 2.41423 3.00039 3.11328 3.11611 3.59767 3.89163 4.00655 4.30449 4.42679 4.49593 4.51418 4.85919 4.87755 4.94439 5.04075 5.17578 5.26456 5.47004 5.59050 5.66997 5.73439 5.82825 6.16147 6.78974 6.85495 7.33638 7.35716 8.87964 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.042501 B = 0.002676 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.657234 B =10460.212096 C =11001.139819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.022 3.978 10 C 0.159 3.841 11 N -0.724 5.724 12 C 0.702 3.298 13 O -0.609 6.609 14 N -0.675 5.675 15 C 0.132 3.868 16 C -0.096 4.096 17 C -0.091 4.091 18 C -0.030 4.030 19 Cl -0.050 7.050 20 C -0.120 4.120 21 C 0.076 3.924 22 F -0.132 7.132 23 H 0.266 0.734 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.410 0.590 29 H 0.423 0.577 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 -24.027 0.231 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.015 4.015 10 C 0.036 3.964 11 N -0.378 5.378 12 C 0.403 3.597 13 O -0.488 6.488 14 N -0.324 5.324 15 C 0.035 3.965 16 C -0.117 4.117 17 C -0.111 4.111 18 C -0.058 4.058 19 Cl -0.021 7.021 20 C -0.139 4.139 21 C 0.054 3.946 22 F -0.111 7.111 23 H 0.074 0.926 24 H 0.026 0.974 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.245 0.755 29 H 0.262 0.738 30 H 0.163 0.837 31 H 0.179 0.821 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.300 -23.912 0.189 24.297 hybrid contribution -0.951 1.033 -0.129 1.410 sum 3.349 -22.880 0.060 23.123 Atomic orbital electron populations 1.70043 1.07554 1.28060 1.51000 1.25858 0.95766 1.03081 0.94455 0.85516 0.78303 0.78187 0.79162 1.19367 1.20770 1.19249 1.21438 0.93690 0.91811 1.51539 0.92067 1.19138 0.94284 0.91632 0.96456 1.21182 0.94634 0.80379 1.00237 1.45258 1.10727 1.04225 1.77541 1.16000 0.85268 0.80720 0.77742 1.90874 1.12775 1.86602 1.58583 1.42373 1.11032 1.02345 1.76650 1.17790 0.94974 0.84958 0.98758 1.21237 0.93453 0.98261 0.98735 1.21224 1.01315 0.90276 0.98259 1.20621 0.93870 0.89233 1.02091 1.98389 1.75807 1.30892 1.97000 1.20964 0.94010 0.97153 1.01801 1.17220 0.83767 0.95004 0.98637 1.91509 1.41112 1.96374 1.82088 0.92565 0.97350 0.97151 0.92975 0.93332 0.75466 0.73822 0.83652 0.82084 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.65 13.29 21.45 0.28 -53.37 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.55 -29.79 9.11 25.60 0.23 -29.55 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.09 5.09 29.85 0.15 1.25 16 10 C 0.16 6.53 5.61 86.38 0.48 7.01 16 11 N -0.72 -23.73 5.56 -478.52 -2.66 -26.39 16 12 C 0.70 22.63 8.41 179.05 1.51 24.14 16 13 O -0.61 -23.52 13.76 -3.98 -0.05 -23.57 16 14 N -0.68 -16.59 5.24 -316.95 -1.66 -18.25 16 15 C 0.13 3.15 6.32 38.14 0.24 3.39 16 16 C -0.10 -2.26 8.70 22.38 0.19 -2.07 16 17 C -0.09 -1.68 9.82 22.28 0.22 -1.46 16 18 C -0.03 -0.52 6.32 22.33 0.14 -0.38 16 19 Cl -0.05 -0.74 28.95 -2.72 -0.08 -0.82 16 20 C -0.12 -2.02 9.80 22.32 0.22 -1.80 16 21 C 0.08 1.56 7.31 22.48 0.16 1.73 16 22 F -0.13 -2.75 16.96 44.97 0.76 -1.99 16 23 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.41 11.32 8.49 -92.71 -0.79 10.54 16 29 H 0.42 7.98 8.68 -92.71 -0.81 7.17 16 30 H 0.15 3.99 6.19 -2.91 -0.02 3.97 16 31 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -63.76 304.65 2.23 -61.53 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -0.41 Total: 14.81 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 4.02 Total: 3.11 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -4.04 Total: -98.01 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.76 Total: -1.99 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -63.76 2.23 -61.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273102250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.063 kcal (2) G-P(sol) polarization free energy of solvation -63.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds