Wall clock time and date at job start Tue Mar 31 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48502 * 109.47031 * 239.99638 * 3 2 1 5 5 H 1.48495 * 109.47430 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47170 * 120.00001 * 3 2 1 7 7 C 1.37878 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99347 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46903 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46740 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99954 * 179.97438 * 11 10 9 13 13 O 1.21595 * 119.99912 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99776 * 180.27353 * 12 11 10 15 15 C 1.40121 * 119.99725 * 175.24043 * 14 12 11 16 16 C 1.38822 * 120.04553 * 34.68792 * 15 14 12 17 17 C 1.38130 * 119.96748 * 179.74409 * 16 15 14 18 18 C 1.38484 * 120.06383 * 0.55189 * 17 16 15 19 19 F 1.35105 * 119.95240 * 179.72224 * 18 17 16 20 20 C 1.38447 * 120.09620 * 359.70561 * 18 17 16 21 21 C 1.38230 * 120.03327 * 0.02562 * 20 18 17 22 22 Cl 1.73607 * 120.03486 * 179.97438 * 21 20 18 23 23 H 0.97001 * 119.99934 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46728 * 60.00140 * 9 7 2 25 25 H 1.08998 * 109.46952 * 299.99703 * 9 7 2 26 26 H 1.08995 * 109.47212 * 59.99980 * 10 9 7 27 27 H 1.09003 * 109.47009 * 299.99792 * 10 9 7 28 28 H 0.97002 * 120.00346 * 359.97438 * 11 10 9 29 29 H 0.96992 * 120.00392 * 355.24726 * 14 12 11 30 30 H 1.08002 * 120.01794 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.97095 * 180.25534 * 17 16 15 32 32 H 1.08009 * 119.98337 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9307 0.0012 12 6 2.1867 -6.0980 0.0016 13 8 3.4027 -6.0980 0.0020 14 7 1.5128 -7.2651 -0.0045 15 6 2.2103 -8.4763 -0.1048 16 6 3.4565 -8.6121 0.4915 17 6 4.1403 -9.8085 0.3962 18 6 3.5890 -10.8688 -0.3034 19 9 4.2623 -12.0362 -0.4000 20 6 2.3487 -10.7346 -0.9037 21 6 1.6584 -9.5409 -0.8061 22 17 0.1034 -9.3723 -1.5594 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8727 -3.6047 -0.8877 28 1 0.5428 -4.9308 0.0005 29 1 0.5451 -7.2668 0.0604 30 1 3.8892 -7.7843 1.0336 31 1 5.1080 -9.9155 0.8636 32 1 1.9202 -11.5629 -1.4485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273119288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:39 Heat of formation + Delta-G solvation = -63.000170 kcal Electronic energy + Delta-G solvation = -19093.903893 eV Core-core repulsion = 15608.631410 eV Total energy + Delta-G solvation = -3485.272483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.12217 -40.67868 -38.77693 -36.77175 -35.23382 -34.59268 -32.92214 -31.23673 -30.16525 -28.66222 -24.91134 -23.65278 -22.81514 -21.13389 -20.79777 -18.66244 -18.04721 -17.61601 -16.60591 -16.35876 -15.85853 -15.40728 -15.08034 -14.77030 -14.57897 -14.16309 -13.89192 -13.85771 -13.50358 -13.23335 -13.05536 -12.32537 -11.81327 -11.61194 -11.37067 -11.27064 -11.07872 -10.69834 -10.53868 -10.34425 -10.07495 -9.65337 -9.35143 -9.23318 -8.73343 -8.45772 -8.17203 -6.13531 -4.16776 0.68233 0.83734 1.70037 2.61229 3.02782 3.28798 3.32959 3.36111 3.42464 4.01843 4.25611 4.39239 4.42652 4.65167 4.90376 5.05171 5.23737 5.34639 5.63869 5.79948 5.96002 6.14432 6.18623 6.27808 6.60484 6.65799 6.77038 6.90881 7.47580 7.55252 7.84430 8.05040 8.23599 8.63544 8.88940 9.48359 10.98021 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.032700 B = 0.002976 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.059362 B = 9406.186424 C =10140.034449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.138 3.862 11 N -0.728 5.728 12 C 0.699 3.301 13 O -0.578 6.578 14 N -0.688 5.688 15 C 0.181 3.819 16 C -0.082 4.082 17 C -0.127 4.127 18 C 0.086 3.914 19 F -0.136 7.136 20 C -0.127 4.127 21 C -0.046 4.046 22 Cl -0.053 7.053 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.397 0.603 29 H 0.409 0.591 30 H 0.164 0.836 31 H 0.145 0.855 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 -21.715 -0.019 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.016 3.984 11 N -0.380 5.380 12 C 0.400 3.600 13 O -0.456 6.456 14 N -0.336 5.336 15 C 0.083 3.917 16 C -0.103 4.103 17 C -0.146 4.146 18 C 0.066 3.934 19 F -0.115 7.115 20 C -0.147 4.147 21 C -0.076 4.076 22 Cl -0.024 7.024 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.230 0.770 29 H 0.246 0.754 30 H 0.181 0.819 31 H 0.162 0.838 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.944 -21.448 -0.099 21.536 hybrid contribution -0.655 0.718 -0.149 0.984 sum 1.288 -20.730 -0.248 20.771 Atomic orbital electron populations 1.69942 1.06107 1.27069 1.50151 1.24992 0.94900 0.99438 0.94899 0.86558 0.79512 0.82571 0.78818 1.20076 1.21237 1.20070 1.20990 0.93241 0.90280 1.51688 0.92212 1.19330 0.94222 0.90963 0.97942 1.21717 0.95773 0.79908 1.01026 1.45596 1.10217 1.05080 1.77125 1.16009 0.85671 0.80207 0.78126 1.90893 1.11338 1.86055 1.57316 1.42753 1.10425 1.03215 1.77256 1.17276 0.93558 0.84707 0.96187 1.21302 0.93179 0.97702 0.98109 1.21205 1.01532 0.91820 1.00056 1.17400 0.91526 0.82740 1.01776 1.91512 1.79501 1.45754 1.94739 1.20713 0.94073 0.97561 1.02380 1.20408 0.90567 0.95565 1.01109 1.98385 1.25854 1.97776 1.80421 0.92736 0.95867 0.95875 0.92348 0.92374 0.76964 0.75412 0.81879 0.83757 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.14 2.78 5.61 -4.04 -0.02 2.76 16 11 N -0.73 -11.86 5.56 -65.23 -0.36 -12.22 16 12 C 0.70 11.20 8.41 -86.92 -0.73 10.47 16 13 O -0.58 -11.02 13.76 5.28 0.07 -10.94 16 14 N -0.69 -8.52 5.06 -14.18 -0.07 -8.59 16 15 C 0.18 2.19 6.31 -83.60 -0.53 1.66 16 16 C -0.08 -0.99 8.70 -39.40 -0.34 -1.34 16 17 C -0.13 -1.29 10.02 -39.53 -0.40 -1.69 16 18 C 0.09 0.88 7.30 -39.41 -0.29 0.59 16 19 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 20 C -0.13 -1.23 9.80 -39.51 -0.39 -1.62 16 21 C -0.05 -0.49 6.34 -39.33 -0.25 -0.74 16 22 Cl -0.05 -0.52 27.96 -51.86 -1.45 -1.97 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.40 5.51 8.49 -40.82 -0.35 5.16 16 29 H 0.41 4.07 8.10 -40.82 -0.33 3.74 16 30 H 0.16 2.20 6.20 -52.49 -0.33 1.87 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 303.40 15.07 4.57 4.57 Total: -1.00 -30.05 303.40 -8.06 -38.11 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.08 Total: 3.98 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.50 Total: -2.65 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.30 Total: -45.72 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.45 Total: -1.97 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.05 -8.06 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273119288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.886 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds