Wall clock time and date at job start Tue Mar 31 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48502 * 109.47031 * 239.99638 * 3 2 1 5 5 H 1.48495 * 109.47430 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47170 * 120.00001 * 3 2 1 7 7 C 1.37878 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99347 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46903 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46740 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99954 * 179.97438 * 11 10 9 13 13 O 1.21595 * 119.99912 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99776 * 180.27353 * 12 11 10 15 15 C 1.40121 * 119.99725 * 175.24043 * 14 12 11 16 16 C 1.38822 * 120.04553 * 34.68792 * 15 14 12 17 17 C 1.38130 * 119.96748 * 179.74409 * 16 15 14 18 18 C 1.38484 * 120.06383 * 0.55189 * 17 16 15 19 19 F 1.35105 * 119.95240 * 179.72224 * 18 17 16 20 20 C 1.38447 * 120.09620 * 359.70561 * 18 17 16 21 21 C 1.38230 * 120.03327 * 0.02562 * 20 18 17 22 22 Cl 1.73607 * 120.03486 * 179.97438 * 21 20 18 23 23 H 0.97001 * 119.99934 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46728 * 60.00140 * 9 7 2 25 25 H 1.08998 * 109.46952 * 299.99703 * 9 7 2 26 26 H 1.08995 * 109.47212 * 59.99980 * 10 9 7 27 27 H 1.09003 * 109.47009 * 299.99792 * 10 9 7 28 28 H 0.97002 * 120.00346 * 359.97438 * 11 10 9 29 29 H 0.96992 * 120.00392 * 355.24726 * 14 12 11 30 30 H 1.08002 * 120.01794 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.97095 * 180.25534 * 17 16 15 32 32 H 1.08009 * 119.98337 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9307 0.0012 12 6 2.1867 -6.0980 0.0016 13 8 3.4027 -6.0980 0.0020 14 7 1.5128 -7.2651 -0.0045 15 6 2.2103 -8.4763 -0.1048 16 6 3.4565 -8.6121 0.4915 17 6 4.1403 -9.8085 0.3962 18 6 3.5890 -10.8688 -0.3034 19 9 4.2623 -12.0362 -0.4000 20 6 2.3487 -10.7346 -0.9037 21 6 1.6584 -9.5409 -0.8061 22 17 0.1034 -9.3723 -1.5594 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8727 -3.6047 -0.8877 28 1 0.5428 -4.9308 0.0005 29 1 0.5451 -7.2668 0.0604 30 1 3.8892 -7.7843 1.0336 31 1 5.1080 -9.9155 0.8636 32 1 1.9202 -11.5629 -1.4485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273119288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:38 Heat of formation + Delta-G solvation = -81.423823 kcal Electronic energy + Delta-G solvation = -19094.702803 eV Core-core repulsion = 15608.631410 eV Total energy + Delta-G solvation = -3486.071393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.94307 -41.80516 -39.82583 -37.58892 -36.73951 -35.79120 -34.82965 -32.08693 -31.75368 -29.86554 -26.72256 -24.60184 -23.87059 -22.80340 -22.04788 -19.83523 -19.00274 -18.63790 -18.38855 -17.50148 -16.76863 -16.61463 -16.49447 -16.21961 -15.85007 -15.34661 -15.17097 -14.90179 -14.61849 -14.30823 -14.24699 -14.02293 -13.22044 -12.93948 -12.67523 -12.53102 -12.43990 -12.23468 -12.17701 -11.69336 -11.54768 -11.41478 -11.17521 -10.59073 -10.12874 -10.05235 -9.15681 -8.23022 -6.33082 -0.17772 -0.01281 0.87138 1.41610 1.45413 1.46753 1.54113 1.90396 2.41292 2.42418 3.11154 3.12336 3.18708 3.56986 3.87383 4.07137 4.13644 4.44961 4.52712 4.53002 4.83280 4.87734 4.95004 5.05343 5.24105 5.28224 5.48425 5.60538 5.69489 5.75323 5.84598 6.17197 6.79991 6.87551 7.35801 7.37058 8.88612 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.032700 B = 0.002976 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.059362 B = 9406.186424 C =10140.034449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.724 5.724 12 C 0.703 3.297 13 O -0.609 6.609 14 N -0.673 5.673 15 C 0.161 3.839 16 C -0.095 4.095 17 C -0.121 4.121 18 C 0.087 3.913 19 F -0.135 7.135 20 C -0.120 4.120 21 C -0.045 4.045 22 Cl -0.044 7.044 23 H 0.265 0.735 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.409 0.591 29 H 0.421 0.579 30 H 0.146 0.854 31 H 0.163 0.837 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 -22.719 -0.280 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.015 4.015 10 C 0.036 3.964 11 N -0.378 5.378 12 C 0.403 3.597 13 O -0.489 6.489 14 N -0.322 5.322 15 C 0.064 3.936 16 C -0.116 4.116 17 C -0.141 4.141 18 C 0.067 3.933 19 F -0.114 7.114 20 C -0.140 4.140 21 C -0.075 4.075 22 Cl -0.015 7.015 23 H 0.074 0.926 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.245 0.755 29 H 0.260 0.740 30 H 0.164 0.836 31 H 0.181 0.819 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.194 -22.503 -0.360 22.612 hybrid contribution -0.755 0.903 -0.078 1.180 sum 1.440 -21.599 -0.437 21.652 Atomic orbital electron populations 1.70048 1.07535 1.28032 1.51031 1.25849 0.95759 1.03042 0.94469 0.85524 0.78309 0.78234 0.79151 1.19376 1.20788 1.19273 1.21446 0.93692 0.91845 1.51500 0.92089 1.19134 0.94282 0.91607 0.96462 1.21172 0.94622 0.80409 1.00215 1.45251 1.10701 1.04233 1.77565 1.15993 0.85249 0.80730 0.77704 1.90879 1.12803 1.86621 1.58605 1.42462 1.10915 1.02345 1.76501 1.17432 0.93989 0.84771 0.97431 1.21198 0.93583 0.98009 0.98792 1.21348 1.02056 0.91070 0.99583 1.17454 0.91677 0.82643 1.01574 1.91521 1.79521 1.45655 1.94704 1.20949 0.93635 0.97714 1.01652 1.20402 0.90990 0.95316 1.00766 1.98392 1.25133 1.97767 1.80175 0.92584 0.97315 0.97159 0.93011 0.93345 0.75499 0.73979 0.83593 0.81906 0.81251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.49 13.29 21.45 0.28 -53.21 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.55 -29.71 9.11 25.60 0.23 -29.47 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.10 5.09 29.85 0.15 1.25 16 10 C 0.16 6.49 5.61 86.38 0.48 6.98 16 11 N -0.72 -23.47 5.56 -478.53 -2.66 -26.13 16 12 C 0.70 22.30 8.41 179.05 1.51 23.81 16 13 O -0.61 -23.32 13.76 -4.02 -0.06 -23.37 16 14 N -0.67 -16.13 5.06 -317.02 -1.60 -17.73 16 15 C 0.16 3.73 6.31 38.12 0.24 3.98 16 16 C -0.10 -2.24 8.70 22.38 0.19 -2.05 16 17 C -0.12 -2.30 10.02 22.30 0.22 -2.08 16 18 C 0.09 1.59 7.30 22.38 0.16 1.75 16 19 F -0.14 -2.51 17.27 44.97 0.78 -1.73 16 20 C -0.12 -2.03 9.80 22.32 0.22 -1.81 16 21 C -0.04 -0.87 6.34 22.43 0.14 -0.73 16 22 Cl -0.04 -0.76 27.96 -2.72 -0.08 -0.84 16 23 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 24 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.41 11.18 8.49 -92.71 -0.79 10.40 16 29 H 0.42 7.88 8.10 -92.71 -0.75 7.13 16 30 H 0.15 3.99 6.20 -2.91 -0.02 3.97 16 31 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -63.35 303.40 2.36 -60.99 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.35 Total: 14.64 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 4.02 Total: 2.51 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -3.98 Total: -97.07 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.06 Total: -23.37 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -63.35 2.36 -60.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273119288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.429 kcal (2) G-P(sol) polarization free energy of solvation -63.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds