Wall clock time and date at job start Tue Mar 31 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99869 * 2 1 4 4 H 1.48504 * 109.47228 * 270.00071 * 3 2 1 5 5 H 1.48498 * 109.47276 * 30.00120 * 3 2 1 6 6 H 1.48497 * 109.47406 * 150.00011 * 3 2 1 7 7 C 1.37881 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00059 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99589 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46633 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47166 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00321 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99970 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00135 * 179.97438 * 12 11 10 15 15 C 1.39999 * 120.00095 * 185.32188 * 14 12 11 16 16 C 1.38885 * 120.04517 * 213.26236 * 15 14 12 17 17 C 1.38109 * 119.99477 * 179.97438 * 16 15 14 18 18 C 1.38354 * 120.07555 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 119.95515 * 180.27397 * 18 17 16 20 20 C 1.38580 * 120.09244 * 359.97438 * 18 17 16 21 21 F 1.35101 * 119.99458 * 179.97438 * 20 18 17 22 22 C 1.38341 * 120.01040 * 359.97438 * 20 18 17 23 23 H 0.97005 * 120.00491 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47217 * 60.00002 * 9 7 2 25 25 H 1.08997 * 109.47287 * 299.99541 * 9 7 2 26 26 H 1.09002 * 109.47625 * 59.99658 * 10 9 7 27 27 H 1.09002 * 109.47551 * 299.99828 * 10 9 7 28 28 H 0.96999 * 120.00090 * 359.97438 * 11 10 9 29 29 H 0.97007 * 120.00163 * 5.32175 * 14 12 11 30 30 H 1.08003 * 120.00008 * 0.04371 * 16 15 14 31 31 H 1.07992 * 119.96241 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.03989 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0215 -2.6364 -0.0023 11 7 5.4865 -2.6364 -0.0035 12 6 6.1605 -3.8036 -0.0041 13 8 5.5526 -4.8566 -0.0042 14 7 7.5082 -3.8036 -0.0057 15 6 8.2081 -5.0108 -0.1188 16 6 9.4271 -5.1709 0.5271 17 6 10.1165 -6.3624 0.4152 18 6 9.5943 -7.3973 -0.3403 19 17 10.4600 -8.8961 -0.4729 20 6 8.3782 -7.2411 -0.9861 21 9 7.8704 -8.2527 -1.7237 22 6 7.6841 -6.0495 -0.8757 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8745 -0.6800 -0.8911 26 1 3.6578 -3.1497 -0.8924 27 1 3.6586 -3.1509 0.8875 28 1 5.9715 -1.7964 -0.0038 29 1 7.9933 -2.9671 0.0715 30 1 9.8355 -4.3641 1.1177 31 1 11.0641 -6.4866 0.9180 32 1 6.7365 -5.9272 -1.3792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273232393.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:13 Heat of formation + Delta-G solvation = -57.890552 kcal Electronic energy + Delta-G solvation = -19066.413470 eV Core-core repulsion = 15581.362557 eV Total energy + Delta-G solvation = -3485.050913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.11527 -40.75299 -38.86365 -36.85624 -35.32018 -34.65607 -32.89544 -31.06591 -30.54957 -29.14342 -25.14568 -23.59432 -22.80219 -20.99478 -20.92182 -18.76569 -18.21490 -17.08498 -16.85874 -16.63537 -15.98410 -15.92206 -15.43595 -14.74707 -14.30227 -14.16855 -13.98781 -13.84880 -13.50911 -13.21662 -12.67418 -12.66450 -12.26591 -11.98849 -11.57436 -11.30873 -11.21545 -10.52502 -10.44349 -10.34776 -10.07586 -9.94233 -9.40451 -9.17860 -8.83201 -8.66532 -8.31823 -6.16357 -4.17217 0.64296 0.81950 1.76753 2.48958 2.93012 3.20414 3.27544 3.29207 3.36679 3.81960 4.17828 4.32133 4.39412 4.64339 4.83757 5.07974 5.16247 5.43724 5.54980 5.67305 5.78144 5.96122 6.06575 6.11110 6.45845 6.54666 6.55809 6.74504 7.08624 7.14203 7.59364 7.92711 8.37598 8.51734 8.87837 9.43081 10.96585 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.047177 B = 0.002726 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.370337 B =10270.858907 C =10726.664611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.021 4.021 10 C 0.145 3.855 11 N -0.731 5.731 12 C 0.696 3.304 13 O -0.571 6.571 14 N -0.690 5.690 15 C 0.215 3.785 16 C -0.153 4.153 17 C -0.060 4.060 18 C -0.100 4.100 19 Cl -0.057 7.057 20 C 0.134 3.866 21 F -0.124 7.124 22 C -0.150 4.150 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.395 0.605 29 H 0.411 0.589 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.308 -9.283 0.107 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.059 4.059 10 C 0.023 3.977 11 N -0.384 5.384 12 C 0.396 3.604 13 O -0.448 6.448 14 N -0.337 5.337 15 C 0.117 3.883 16 C -0.174 4.174 17 C -0.079 4.079 18 C -0.129 4.129 19 Cl -0.028 7.028 20 C 0.113 3.887 21 F -0.102 7.102 22 C -0.172 4.172 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.228 0.772 29 H 0.247 0.753 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 23.489 -10.214 0.059 25.614 hybrid contribution 0.725 1.475 -0.074 1.646 sum 24.214 -8.739 -0.015 25.743 Atomic orbital electron populations 1.69896 1.06304 1.27134 1.50139 1.25001 0.94770 0.99161 0.94325 0.86744 0.80209 0.83546 0.78494 1.20214 1.21242 1.19133 1.20888 0.88497 0.94973 1.51949 0.90531 1.19800 0.98082 0.91122 0.96904 1.21511 0.73928 1.00315 1.01932 1.45589 1.09331 1.05973 1.77554 1.16047 0.80632 0.85402 0.78275 1.90963 1.67079 1.30214 1.56504 1.42790 1.05795 1.08006 1.77152 1.17234 0.91372 0.86225 0.93438 1.20873 0.95805 0.98748 1.01998 1.20672 1.00019 0.90663 0.96578 1.20899 0.94934 0.90908 1.06135 1.98375 1.75721 1.31478 1.97250 1.17149 0.91617 0.85989 0.93904 1.91552 1.86653 1.57869 1.74147 1.21174 1.02645 0.91770 1.01562 0.92470 0.95941 0.96370 0.91722 0.91713 0.77157 0.75320 0.84034 0.83635 0.82231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.96 55.43 0.77 -26.02 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 20.39 27.47 -169.99 -4.67 15.73 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 7 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 9 C -0.02 -0.46 4.16 -27.88 -0.12 -0.58 16 10 C 0.15 2.77 5.61 -4.04 -0.02 2.75 16 11 N -0.73 -10.75 5.56 -65.23 -0.36 -11.11 16 12 C 0.70 10.37 8.30 -86.92 -0.72 9.65 16 13 O -0.57 -10.85 14.02 5.29 0.07 -10.77 16 14 N -0.69 -7.18 5.35 -14.22 -0.08 -7.26 16 15 C 0.21 2.32 6.28 -83.68 -0.53 1.79 16 16 C -0.15 -1.21 9.96 -39.39 -0.39 -1.61 16 17 C -0.06 -0.48 9.82 -39.59 -0.39 -0.87 16 18 C -0.10 -1.04 6.33 -39.41 -0.25 -1.29 16 19 Cl -0.06 -0.56 28.61 -51.86 -1.48 -2.05 16 20 C 0.13 1.65 7.27 -39.42 -0.29 1.36 16 21 F -0.12 -1.66 16.83 2.25 0.04 -1.62 16 22 C -0.15 -1.93 8.63 -39.34 -0.34 -2.27 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 25 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.40 4.54 8.49 -40.82 -0.35 4.20 16 29 H 0.41 2.69 8.83 -40.82 -0.36 2.33 16 30 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 31 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.16 2.38 6.41 -52.49 -0.34 2.04 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -32.14 301.24 -7.73 -39.87 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -3.09 Total: 2.47 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -3.47 Total: -3.78 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.33 Total: -44.39 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.73 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.14 -7.73 -39.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273232393.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.023 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds