Wall clock time and date at job start Tue Mar 31 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99869 * 2 1 4 4 H 1.48504 * 109.47228 * 270.00071 * 3 2 1 5 5 H 1.48498 * 109.47276 * 30.00120 * 3 2 1 6 6 H 1.48497 * 109.47406 * 150.00011 * 3 2 1 7 7 C 1.37881 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00059 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99589 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46633 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47166 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00321 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99970 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00135 * 179.97438 * 12 11 10 15 15 C 1.39999 * 120.00095 * 185.32188 * 14 12 11 16 16 C 1.38885 * 120.04517 * 213.26236 * 15 14 12 17 17 C 1.38109 * 119.99477 * 179.97438 * 16 15 14 18 18 C 1.38354 * 120.07555 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 119.95515 * 180.27397 * 18 17 16 20 20 C 1.38580 * 120.09244 * 359.97438 * 18 17 16 21 21 F 1.35101 * 119.99458 * 179.97438 * 20 18 17 22 22 C 1.38341 * 120.01040 * 359.97438 * 20 18 17 23 23 H 0.97005 * 120.00491 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47217 * 60.00002 * 9 7 2 25 25 H 1.08997 * 109.47287 * 299.99541 * 9 7 2 26 26 H 1.09002 * 109.47625 * 59.99658 * 10 9 7 27 27 H 1.09002 * 109.47551 * 299.99828 * 10 9 7 28 28 H 0.96999 * 120.00090 * 359.97438 * 11 10 9 29 29 H 0.97007 * 120.00163 * 5.32175 * 14 12 11 30 30 H 1.08003 * 120.00008 * 0.04371 * 16 15 14 31 31 H 1.07992 * 119.96241 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.03989 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0215 -2.6364 -0.0023 11 7 5.4865 -2.6364 -0.0035 12 6 6.1605 -3.8036 -0.0041 13 8 5.5526 -4.8566 -0.0042 14 7 7.5082 -3.8036 -0.0057 15 6 8.2081 -5.0108 -0.1188 16 6 9.4271 -5.1709 0.5271 17 6 10.1165 -6.3624 0.4152 18 6 9.5943 -7.3973 -0.3403 19 17 10.4600 -8.8961 -0.4729 20 6 8.3782 -7.2411 -0.9861 21 9 7.8704 -8.2527 -1.7237 22 6 7.6841 -6.0495 -0.8757 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8745 -0.6800 -0.8911 26 1 3.6578 -3.1497 -0.8924 27 1 3.6586 -3.1509 0.8875 28 1 5.9715 -1.7964 -0.0038 29 1 7.9933 -2.9671 0.0715 30 1 9.8355 -4.3641 1.1177 31 1 11.0641 -6.4866 0.9180 32 1 6.7365 -5.9272 -1.3792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273232393.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:12 Heat of formation + Delta-G solvation = -80.428378 kcal Electronic energy + Delta-G solvation = -19067.390783 eV Core-core repulsion = 15581.362557 eV Total energy + Delta-G solvation = -3486.028227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.07376 -41.79720 -39.81895 -37.68501 -36.73852 -35.72865 -34.80265 -32.22486 -31.79005 -30.20800 -26.84392 -24.53165 -23.73548 -22.63407 -22.10738 -19.84488 -19.24294 -18.92804 -17.81784 -17.56494 -16.99369 -16.87846 -16.65988 -16.29325 -15.81762 -15.41461 -15.29892 -14.90094 -14.60945 -14.49252 -14.09040 -13.43044 -13.34665 -13.13617 -13.05941 -12.78878 -12.20293 -12.16924 -11.99527 -11.74869 -11.56092 -11.40546 -11.20130 -10.77965 -10.16222 -10.00389 -9.19141 -8.28814 -6.36532 -0.17782 0.03034 0.97757 1.40735 1.43559 1.44842 1.54671 1.88104 2.38218 2.46621 2.92719 3.06570 3.20059 3.61653 3.96603 4.01182 4.32433 4.33964 4.44197 4.63249 4.75699 4.84195 4.93210 5.03949 5.09932 5.22149 5.40364 5.42306 5.63792 5.69964 5.87655 6.23320 6.71218 6.93857 7.27983 7.38670 8.88050 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.047177 B = 0.002726 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.370337 B =10270.858907 C =10726.664611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.232 1.232 7 C -0.540 4.540 8 H 0.028 0.972 9 C -0.012 4.012 10 C 0.162 3.838 11 N -0.719 5.719 12 C 0.697 3.303 13 O -0.618 6.618 14 N -0.666 5.666 15 C 0.199 3.801 16 C -0.126 4.126 17 C -0.049 4.049 18 C -0.102 4.102 19 Cl -0.054 7.054 20 C 0.109 3.891 21 F -0.140 7.140 22 C -0.171 4.171 23 H 0.268 0.732 24 H 0.041 0.959 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.415 0.585 29 H 0.433 0.567 30 H 0.186 0.814 31 H 0.183 0.817 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.560 -7.262 1.199 29.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.155 1.155 7 C -0.578 4.578 8 H 0.046 0.954 9 C -0.050 4.050 10 C 0.038 3.962 11 N -0.374 5.374 12 C 0.397 3.603 13 O -0.497 6.497 14 N -0.316 5.316 15 C 0.102 3.898 16 C -0.147 4.147 17 C -0.067 4.067 18 C -0.131 4.131 19 Cl -0.025 7.025 20 C 0.089 3.911 21 F -0.118 7.118 22 C -0.193 4.193 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.252 0.748 29 H 0.274 0.726 30 H 0.203 0.797 31 H 0.200 0.800 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 27.830 -8.181 1.149 29.030 hybrid contribution -0.590 0.708 -0.410 1.009 sum 27.240 -7.473 0.739 28.256 Atomic orbital electron populations 1.70082 1.08713 1.28443 1.51997 1.26117 0.95686 1.04015 0.93689 0.85512 0.79777 0.77122 0.79271 1.19106 1.21556 1.15471 1.21262 0.91703 0.93327 1.51545 0.95398 1.19648 0.94221 0.92749 0.98338 1.20958 0.76612 0.98508 1.00128 1.45103 1.07501 1.07113 1.77705 1.16137 0.81956 0.84446 0.77758 1.90953 1.68558 1.31900 1.58313 1.42403 1.03988 1.09166 1.76041 1.17437 0.92542 0.85689 0.94102 1.21287 0.93678 0.99605 1.00140 1.21147 1.00918 0.89550 0.95133 1.21107 0.94222 0.91754 1.06016 1.98378 1.75340 1.31556 1.97252 1.17351 0.92852 0.85748 0.95185 1.91501 1.87087 1.58481 1.74776 1.21039 1.02045 0.93241 1.03014 0.92369 0.94110 0.94406 0.93804 0.93675 0.74753 0.72629 0.79718 0.79979 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 2 C 0.00 0.11 5.47 84.66 0.46 0.57 16 3 Si 0.96 40.87 27.47 68.60 1.88 42.76 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.23 -8.52 6.54 99.48 0.65 -7.87 16 7 C -0.54 -30.02 9.66 25.60 0.25 -29.77 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 10 C 0.16 6.21 5.61 86.38 0.48 6.70 16 11 N -0.72 -19.89 5.56 -478.53 -2.66 -22.55 16 12 C 0.70 20.10 8.30 179.06 1.49 21.58 16 13 O -0.62 -24.13 14.02 -4.00 -0.06 -24.19 16 14 N -0.67 -12.16 5.35 -317.17 -1.70 -13.86 16 15 C 0.20 3.88 6.28 38.13 0.24 4.12 16 16 C -0.13 -1.44 9.96 22.39 0.22 -1.21 16 17 C -0.05 -0.58 9.82 22.27 0.22 -0.36 16 18 C -0.10 -1.95 6.33 22.38 0.14 -1.81 16 19 Cl -0.05 -0.99 28.61 -2.72 -0.08 -1.06 16 20 C 0.11 2.72 7.27 22.38 0.16 2.88 16 21 F -0.14 -3.96 16.83 44.97 0.76 -3.20 16 22 C -0.17 -4.49 8.63 22.43 0.19 -4.30 16 23 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 24 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 25 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.42 8.06 8.49 -92.71 -0.79 7.27 16 29 H 0.43 3.83 8.83 -92.70 -0.82 3.02 16 30 H 0.19 0.57 8.06 -2.91 -0.02 0.54 16 31 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.13 4.14 6.41 -2.91 -0.02 4.13 16 Total: -1.00 -75.33 301.24 1.96 -73.37 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -0.48 Total: 9.14 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 3.98 Total: -1.97 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -4.06 Total: -94.84 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.06 Total: -24.19 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.76 Total: -3.20 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.88 Total: 42.76 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.06 kcal Total: -75.33 1.96 -73.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273232393.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.056 kcal (2) G-P(sol) polarization free energy of solvation -75.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds