Wall clock time and date at job start Tue Mar 31 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99969 * 2 1 4 4 H 1.48495 * 109.47200 * 239.99885 * 3 2 1 5 5 H 1.48502 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47278 * 120.00042 * 3 2 1 7 7 C 1.37882 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99883 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47000 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.46997 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99980 * 180.02562 * 11 10 9 13 13 O 1.21585 * 119.99845 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99944 * 179.97438 * 12 11 10 15 15 C 1.39943 * 119.99636 * 184.62044 * 14 12 11 16 16 C 1.38857 * 120.05119 * 324.88261 * 15 14 12 17 17 C 1.38319 * 119.92931 * 180.02562 * 16 15 14 18 18 F 1.35105 * 119.98297 * 180.02562 * 17 16 15 19 19 C 1.38512 * 120.03551 * 0.02562 * 17 16 15 20 20 C 1.38339 * 120.09593 * 359.95888 * 19 17 16 21 21 Cl 1.73604 * 119.96216 * 180.02562 * 20 19 17 22 22 C 1.38260 * 120.07279 * 0.04362 * 20 19 17 23 23 H 0.96999 * 119.99914 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.46905 * 60.00467 * 9 7 2 25 25 H 1.08994 * 109.47650 * 300.00639 * 9 7 2 26 26 H 1.08992 * 109.47019 * 60.00787 * 10 9 7 27 27 H 1.08998 * 109.47474 * 299.99958 * 10 9 7 28 28 H 0.97006 * 120.00194 * 0.02562 * 11 10 9 29 29 H 0.96993 * 119.99828 * 4.62225 * 14 12 11 30 30 H 1.08000 * 120.03423 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.95032 * 179.97438 * 19 17 16 32 32 H 1.08004 * 120.01896 * 180.25400 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 8 3.4026 -6.0980 -0.0003 14 7 1.5128 -7.2652 -0.0008 15 6 2.2091 -8.4751 0.0973 16 6 3.4536 -8.6119 -0.5033 17 6 4.1394 -9.8091 -0.4053 18 9 5.3505 -9.9432 -0.9888 19 6 3.5851 -10.8706 0.2908 20 6 2.3455 -10.7356 0.8900 21 17 1.6544 -12.0681 1.7622 22 6 1.6563 -9.5409 0.7946 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8895 26 1 2.8719 -3.6044 0.8895 27 1 2.8720 -3.6044 -0.8905 28 1 0.5428 -4.9308 -0.0019 29 1 0.5452 -7.2665 -0.0688 30 1 3.8855 -7.7843 -1.0465 31 1 4.1216 -11.8048 0.3662 32 1 0.6904 -9.4351 1.2661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273314505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:40 Heat of formation + Delta-G solvation = -82.397333 kcal Electronic energy + Delta-G solvation = -18981.467390 eV Core-core repulsion = 15495.353783 eV Total energy + Delta-G solvation = -3486.113607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.03966 -41.80550 -39.85349 -37.66804 -36.69381 -35.77424 -34.83822 -31.90062 -31.56098 -30.31672 -26.79726 -24.49202 -23.86575 -22.83989 -22.09710 -19.85349 -19.28958 -18.45459 -17.61445 -17.44271 -17.00687 -16.82165 -16.65202 -16.49522 -15.86163 -15.67693 -15.26896 -14.96570 -14.57108 -14.28841 -14.26060 -13.31681 -13.22462 -12.97223 -12.94029 -12.67621 -12.54042 -12.23170 -12.11296 -11.69246 -11.53199 -11.37757 -11.17603 -10.59581 -10.14354 -9.83129 -9.35638 -8.23765 -6.33607 -0.11318 -0.09600 0.84993 1.42476 1.44694 1.49951 1.54683 1.87978 2.40291 2.41377 3.01745 3.11594 3.23434 3.84658 3.90429 3.95349 4.04445 4.44181 4.45957 4.51652 4.83198 4.86806 4.96075 5.01005 5.15823 5.25405 5.48040 5.60101 5.67990 5.77187 5.87541 6.16890 6.79462 6.91285 7.35555 7.37579 8.87794 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.033718 B = 0.002720 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.205826 B =10289.893843 C =10953.760096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.159 3.841 11 N -0.721 5.721 12 C 0.699 3.301 13 O -0.615 6.615 14 N -0.669 5.669 15 C 0.205 3.795 16 C -0.173 4.173 17 C 0.121 3.879 18 F -0.138 7.138 19 C -0.159 4.159 20 C 0.011 3.989 21 Cl -0.040 7.040 22 C -0.137 4.137 23 H 0.266 0.734 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.412 0.588 29 H 0.431 0.569 30 H 0.135 0.865 31 H 0.165 0.835 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 -23.906 1.372 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.035 3.965 11 N -0.375 5.375 12 C 0.400 3.600 13 O -0.494 6.494 14 N -0.318 5.318 15 C 0.108 3.892 16 C -0.194 4.194 17 C 0.100 3.900 18 F -0.117 7.117 19 C -0.179 4.179 20 C -0.017 4.017 21 Cl -0.011 7.011 22 C -0.158 4.158 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.248 0.752 29 H 0.271 0.729 30 H 0.152 0.848 31 H 0.183 0.817 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.807 -23.785 1.435 23.842 hybrid contribution -0.286 1.059 -0.185 1.112 sum 0.521 -22.727 1.250 22.767 Atomic orbital electron populations 1.70040 1.07463 1.28049 1.50981 1.25830 0.95766 1.02965 0.94459 0.85541 0.78340 0.78337 0.79105 1.19409 1.20677 1.19396 1.21444 0.93645 0.91939 1.51568 0.92262 1.19128 0.94234 0.91454 0.96578 1.21164 0.94688 0.80617 1.00065 1.45210 1.10769 1.04060 1.77486 1.16082 0.85216 0.81005 0.77744 1.90906 1.13303 1.86675 1.58555 1.42351 1.11223 1.01865 1.76388 1.16990 0.91895 0.85346 0.94941 1.21352 0.97062 0.97607 1.03415 1.17273 0.81801 0.94186 0.96692 1.91512 1.41706 1.96280 1.82186 1.21062 0.96164 1.00077 1.00634 1.20222 0.93779 0.90070 0.97617 1.98402 1.83817 1.44669 1.74201 1.20960 1.03388 0.90813 1.00670 0.92545 0.97072 0.97092 0.93413 0.93361 0.75196 0.72929 0.84766 0.81720 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.11 13.29 21.45 0.28 -52.82 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -29.76 9.11 25.60 0.23 -29.52 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.16 6.44 5.61 86.38 0.48 6.92 16 11 N -0.72 -22.64 5.56 -478.54 -2.66 -25.30 16 12 C 0.70 21.76 8.41 179.05 1.51 23.26 16 13 O -0.61 -24.30 13.78 -3.98 -0.05 -24.35 16 14 N -0.67 -14.30 5.34 -317.20 -1.69 -16.00 16 15 C 0.21 4.50 6.30 38.14 0.24 4.74 16 16 C -0.17 -4.55 8.67 22.44 0.19 -4.35 16 17 C 0.12 2.80 7.30 22.35 0.16 2.97 16 18 F -0.14 -3.48 17.27 44.97 0.78 -2.71 16 19 C -0.16 -2.84 9.80 22.36 0.22 -2.62 16 20 C 0.01 0.18 6.32 22.30 0.14 0.32 16 21 Cl -0.04 -0.55 28.95 -2.72 -0.08 -0.63 16 22 C -0.14 -2.22 9.75 22.42 0.22 -2.00 16 23 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 24 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.41 10.43 8.49 -92.70 -0.79 9.64 16 29 H 0.43 5.68 8.84 -92.71 -0.82 4.86 16 30 H 0.13 4.31 6.22 -2.91 -0.02 4.29 16 31 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -65.93 305.14 2.19 -63.74 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -0.42 Total: 11.26 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 4.01 Total: 1.93 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -4.07 Total: -94.12 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -65.93 2.19 -63.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273314505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.659 kcal (2) G-P(sol) polarization free energy of solvation -65.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds