Wall clock time and date at job start Tue Mar 31 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47367 * 305.69786 * 3 2 1 5 5 C 1.50700 * 109.47481 * 185.69361 * 3 2 1 6 6 H 1.08005 * 120.00207 * 275.01103 * 5 3 2 7 7 C 1.37875 * 119.99767 * 95.00472 * 5 3 2 8 8 N 1.31517 * 120.00099 * 184.83388 * 7 5 3 9 9 Si 1.86799 * 120.00387 * 4.83204 * 7 5 3 10 10 H 1.48506 * 109.47042 * 84.85937 * 9 7 5 11 11 H 1.48496 * 109.47581 * 204.86203 * 9 7 5 12 12 H 1.48501 * 109.47304 * 324.86516 * 9 7 5 13 13 N 1.46500 * 109.46903 * 65.69654 * 3 2 1 14 14 C 1.34782 * 120.00207 * 274.99523 * 13 3 2 15 15 O 1.21533 * 119.99397 * 0.02562 * 14 13 3 16 16 C 1.47990 * 120.00012 * 179.97438 * 14 13 3 17 17 C 1.39944 * 120.93979 * 359.72128 * 16 14 13 18 18 C 1.37988 * 119.06947 * 179.77248 * 17 16 14 19 19 N 1.31894 * 120.99862 * 0.51807 * 18 17 16 20 20 C 1.31801 * 122.07116 * 359.73656 * 19 18 17 21 21 Cl 1.73603 * 119.58800 * 179.97438 * 20 19 18 22 22 C 1.38705 * 120.81824 * 359.97438 * 20 19 18 23 23 F 1.35104 * 120.54047 * 180.02562 * 22 20 19 24 24 H 1.08998 * 109.46690 * 299.99440 * 1 2 3 25 25 H 1.09007 * 109.47018 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47747 * 59.99615 * 1 2 3 27 27 H 1.09001 * 109.47409 * 120.00702 * 2 1 3 28 28 H 1.09008 * 109.46643 * 240.00581 * 2 1 3 29 29 H 0.97001 * 120.00522 * 180.02562 * 8 7 5 30 30 H 0.97003 * 120.00313 * 95.00035 * 13 3 2 31 31 H 1.08005 * 120.46074 * 0.02562 * 17 16 14 32 32 H 1.07998 * 119.50316 * 180.25279 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9849 -0.8345 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3333 0.7330 7 6 4.1156 1.5895 -1.3856 8 7 5.4204 1.4966 -1.5219 9 14 3.0417 1.9172 -2.8785 10 1 2.7752 3.3742 -2.9863 11 1 3.7400 1.4498 -4.1029 12 1 1.7561 1.1884 -2.7332 13 7 1.6668 2.0923 1.2588 14 6 0.4509 2.6588 1.3902 15 8 -0.3360 2.6300 0.4645 16 6 0.0737 3.3147 2.6621 17 6 0.9619 3.3532 3.7428 18 6 0.5720 3.9791 4.9091 19 7 -0.6223 4.5280 5.0190 20 6 -1.4936 4.5118 4.0301 21 17 -3.0483 5.2536 4.2453 22 6 -1.1836 3.9095 2.8198 23 9 -2.0808 3.8966 1.8097 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 5.8251 1.5986 -2.3975 30 1 2.2947 2.1150 1.9978 31 1 1.9404 2.9029 3.6637 32 1 1.2534 4.0165 5.7462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273917543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:14 Heat of formation + Delta-G solvation = -53.711180 kcal Electronic energy + Delta-G solvation = -20316.586912 eV Core-core repulsion = 16831.717230 eV Total energy + Delta-G solvation = -3484.869682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.05310 -40.61108 -39.06283 -36.95844 -35.40336 -33.31359 -32.37092 -31.32762 -30.96786 -27.74296 -25.18906 -23.81267 -22.85969 -21.13693 -19.82556 -18.59136 -17.75966 -17.47509 -16.79542 -16.24813 -15.77788 -15.51674 -14.87127 -14.67466 -14.26916 -14.04513 -13.97585 -13.45746 -12.85914 -12.59881 -12.53980 -12.04641 -12.02639 -11.92543 -11.61622 -11.04581 -10.83938 -10.79067 -10.40425 -10.16631 -10.01396 -9.93419 -9.46779 -9.33167 -9.15713 -8.81336 -8.24365 -6.34277 -4.39481 0.28724 0.42594 1.38889 2.82656 3.18569 3.28199 3.34923 3.38975 3.55854 3.65783 4.10493 4.23471 4.29583 4.48359 4.76053 5.03121 5.22958 5.39211 5.48500 5.94370 5.98945 6.00774 6.13666 6.51997 6.68416 6.80278 6.87454 7.13352 7.18519 7.19278 7.37580 7.92148 8.34071 8.59279 8.68552 9.26707 10.76903 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.004600 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.188908 B = 6085.320255 C = 6435.718127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.085 3.915 8 N -0.884 5.884 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.258 1.258 13 N -0.687 5.687 14 C 0.539 3.461 15 O -0.524 6.524 16 C -0.103 4.103 17 C -0.109 4.109 18 C 0.102 3.898 19 N -0.442 5.442 20 C 0.133 3.867 21 Cl -0.011 7.011 22 C 0.120 3.880 23 F -0.093 7.093 24 H 0.047 0.953 25 H 0.033 0.967 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.269 0.731 30 H 0.393 0.607 31 H 0.161 0.839 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 3.880 12.116 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.072 0.928 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.121 4.121 8 N -0.520 5.520 9 Si 0.697 3.303 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.182 1.182 13 N -0.336 5.336 14 C 0.323 3.677 15 O -0.402 6.402 16 C -0.115 4.115 17 C -0.130 4.130 18 C -0.055 4.055 19 N -0.153 5.153 20 C -0.033 4.033 21 Cl 0.018 6.982 22 C 0.096 3.904 23 F -0.070 7.070 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.228 0.772 31 H 0.178 0.822 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.650 4.297 12.016 16.621 hybrid contribution -0.133 -0.082 -1.298 1.307 sum -10.783 4.215 10.718 15.777 Atomic orbital electron populations 1.21922 0.97362 0.99122 1.01997 1.22084 0.93670 0.99117 1.01543 1.19295 0.95833 0.89253 0.82150 0.92779 1.20954 0.88353 1.52329 0.95612 0.90184 1.24918 0.94880 0.93454 0.98808 1.69868 1.09761 1.47671 1.24696 0.86935 0.81316 0.79764 0.82262 1.19763 1.21032 1.18239 1.46625 1.13440 1.54821 1.18669 1.17830 0.83850 0.80159 0.85876 1.90831 1.50505 1.59042 1.39792 1.21007 0.92954 0.99922 0.97629 1.22554 1.00701 0.97633 0.92105 1.22729 0.91484 0.93553 0.97688 1.66948 1.02742 1.16280 1.29286 1.21685 0.91744 0.99892 0.89963 1.98428 1.22057 1.80375 1.97368 1.18274 0.88021 0.98742 0.85389 1.91658 1.64763 1.93530 1.57095 0.93428 0.94825 0.92926 0.92824 0.91738 0.92061 0.77196 0.82151 0.80286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.53 37.16 0.32 -2.49 16 2 C -0.13 -2.55 5.59 -26.73 -0.15 -2.70 16 3 C 0.24 5.23 1.89 -69.09 -0.13 5.10 16 4 H 0.05 1.33 4.73 -51.93 -0.25 1.08 16 5 C -0.53 -13.45 9.05 -34.44 -0.31 -13.77 16 6 H 0.08 2.10 8.06 -52.48 -0.42 1.68 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 8 N -0.88 -24.95 13.96 55.43 0.77 -24.18 16 9 Si 0.87 20.72 26.99 -169.99 -4.59 16.13 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.26 -6.03 6.82 56.52 0.39 -5.65 16 13 N -0.69 -12.57 4.99 -55.84 -0.28 -12.84 16 14 C 0.54 9.83 6.39 -12.26 -0.08 9.75 16 15 O -0.52 -11.33 12.62 5.34 0.07 -11.26 16 16 C -0.10 -1.49 5.91 -104.61 -0.62 -2.11 16 17 C -0.11 -1.14 9.61 -39.03 -0.38 -1.52 16 18 C 0.10 0.95 11.16 -17.62 -0.20 0.76 16 19 N -0.44 -5.29 10.31 -10.36 -0.11 -5.39 16 20 C 0.13 1.76 7.28 -17.39 -0.13 1.63 16 21 Cl -0.01 -0.13 28.78 -51.86 -1.49 -1.62 16 22 C 0.12 1.78 7.30 -38.76 -0.28 1.50 16 23 F -0.09 -1.55 15.29 2.25 0.03 -1.52 16 24 H 0.05 0.91 5.63 -51.93 -0.29 0.62 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.37 8.14 -51.92 -0.42 0.94 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.39 6.00 6.73 -40.82 -0.27 5.73 16 31 H 0.16 1.27 6.54 -52.48 -0.34 0.93 16 32 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 292.50 15.07 4.41 4.41 Total: -1.00 -30.20 292.50 -6.06 -36.26 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -2.83 Total: 1.71 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.05 Total: -1.69 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.39 Total: -42.41 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.59 Total: 16.13 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.49 Total: -1.62 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.20 -6.06 -36.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273917543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.452 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds