Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46502 * 120.00235 * 2 1 4 4 C 1.50699 * 109.46964 * 270.00157 * 3 2 1 5 5 H 1.08000 * 120.00072 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00076 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99823 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00239 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46976 * 60.00251 * 8 6 4 10 10 H 1.48503 * 109.47213 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47154 * 300.00279 * 8 6 4 12 12 C 1.34772 * 119.99958 * 179.97438 * 2 1 3 13 13 O 1.21609 * 119.99831 * 183.99823 * 12 2 1 14 14 C 1.47433 * 120.00065 * 4.00466 * 12 2 1 15 15 C 1.39799 * 120.18880 * 307.53616 * 14 12 2 16 16 C 1.37816 * 119.94928 * 180.02562 * 15 14 12 17 17 Cl 1.73603 * 119.82756 * 179.97438 * 16 15 14 18 18 C 1.38721 * 120.34158 * 0.02562 * 16 15 14 19 19 C 1.38096 * 120.38937 * 359.72139 * 18 16 15 20 20 F 1.35104 * 119.98036 * 180.27927 * 19 18 16 21 21 C 1.39147 * 120.03838 * 0.55473 * 19 18 16 22 22 N 1.39074 * 120.16866 * 179.71844 * 21 19 18 23 23 H 1.09005 * 109.47137 * 264.55553 * 1 2 3 24 24 H 1.09001 * 109.47561 * 24.55310 * 1 2 3 25 25 H 1.08995 * 109.47349 * 144.55575 * 1 2 3 26 26 H 1.09008 * 109.46732 * 29.99861 * 3 2 1 27 27 H 1.08999 * 109.47550 * 150.00091 * 3 2 1 28 28 H 0.97009 * 119.99823 * 179.97438 * 7 6 4 29 29 H 1.07994 * 120.02420 * 0.02562 * 15 14 12 30 30 H 1.08007 * 119.80203 * 180.02562 * 18 16 15 31 31 H 0.97002 * 119.99781 * 174.55762 * 22 21 19 32 32 H 0.96995 * 120.00552 * 354.54777 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0973 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5525 3.6185 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.1406 3.5936 -4.1346 10 1 4.1804 4.7029 -3.4340 11 1 4.2412 2.3820 -4.1334 12 6 2.1388 -1.1672 0.0005 13 8 3.3526 -1.1684 0.0740 14 6 1.4043 -2.4425 -0.0881 15 6 0.3594 -2.7150 0.7997 16 6 -0.3235 -3.9089 0.7128 17 17 -1.6202 -4.2444 1.8173 18 6 0.0206 -4.8444 -0.2520 19 6 1.0470 -4.5876 -1.1394 20 9 1.3715 -5.5022 -2.0794 21 6 1.7510 -3.3898 -1.0624 22 7 2.7890 -3.1308 -1.9510 23 1 -0.3634 -0.0975 1.0231 24 1 -0.3634 0.9347 -0.4270 25 1 -0.3634 -0.8372 -0.5959 26 1 1.6083 2.0284 0.5139 27 1 3.1499 1.1384 0.5138 28 1 4.0294 4.4445 -0.8505 29 1 0.0875 -1.9906 1.5530 30 1 -0.5207 -5.7771 -0.3126 31 1 3.2259 -2.2648 -1.9473 32 1 3.0762 -3.8162 -2.5744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280890806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -61.197537 kcal Electronic energy + Delta-G solvation = -20227.989594 eV Core-core repulsion = 16742.795279 eV Total energy + Delta-G solvation = -3485.194315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.94787 -40.12915 -38.04519 -36.57433 -35.15655 -34.28782 -32.75096 -31.01607 -28.65369 -27.77836 -26.04141 -24.24920 -22.68651 -22.13240 -19.35620 -17.88524 -17.29949 -17.16532 -16.58124 -15.98608 -15.67379 -15.37536 -15.14363 -15.08909 -14.39883 -14.34852 -13.54959 -13.25720 -12.95337 -12.76929 -12.26584 -12.16721 -11.99730 -11.96360 -11.71050 -11.27681 -11.10683 -10.99027 -10.65207 -10.33985 -10.24310 -9.75580 -9.25376 -8.93962 -8.50836 -7.79907 -7.59844 -6.12113 -4.18000 0.81327 1.12999 2.03455 3.02700 3.26254 3.31315 3.32431 3.45444 3.70901 3.85515 4.20865 4.37997 4.55795 4.81651 4.96326 5.21134 5.25968 5.54044 5.64601 5.74387 5.80984 5.86760 6.00122 6.18336 6.43744 6.94294 7.25847 7.33387 7.41396 7.65742 7.83012 8.13067 8.24620 8.75134 8.91454 9.47398 10.95813 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.021455 B = 0.004795 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.739799 B = 5838.231763 C = 6647.962673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.589 5.589 3 C 0.243 3.757 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.555 3.445 13 O -0.536 6.536 14 C -0.167 4.167 15 C -0.036 4.036 16 C -0.080 4.080 17 Cl -0.069 7.069 18 C -0.081 4.081 19 C 0.018 3.982 20 F -0.137 7.137 21 C 0.246 3.754 22 N -0.847 5.847 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.265 0.735 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.419 0.581 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 -14.981 1.248 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.319 5.319 3 C 0.124 3.876 4 C -0.570 4.570 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.341 3.659 13 O -0.414 6.414 14 C -0.176 4.176 15 C -0.056 4.056 16 C -0.109 4.109 17 Cl -0.040 7.040 18 C -0.101 4.101 19 C -0.007 4.007 20 F -0.116 7.116 21 C 0.134 3.866 22 N -0.384 5.384 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.252 0.748 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.723 -14.782 1.387 17.220 hybrid contribution 0.290 0.220 -1.298 1.348 sum -8.433 -14.562 0.089 16.828 Atomic orbital electron populations 1.21803 0.81098 1.03202 1.00402 1.48121 1.06460 1.07462 1.69854 1.19390 0.92757 0.77702 0.97702 1.21355 1.36999 1.06581 0.92074 0.92509 1.24928 0.95260 0.96292 0.97454 1.69922 1.38012 1.14297 1.30825 0.86553 0.78383 0.77907 0.84534 1.20213 1.21103 1.20227 1.17759 0.87031 0.82923 0.78223 1.90785 1.13183 1.87006 1.50446 1.19423 1.01331 0.97205 0.99649 1.21053 0.91825 0.95252 0.97441 1.20016 0.96708 0.96658 0.97530 1.98355 1.48282 1.95346 1.62006 1.20736 0.96073 0.99919 0.93397 1.16644 1.01095 0.88544 0.94406 1.91462 1.92272 1.64967 1.62868 1.17633 0.88160 0.91202 0.89632 1.42540 1.36709 1.20310 1.38879 0.93407 0.90365 0.92178 0.94625 0.93476 0.92539 0.83785 0.83734 0.74814 0.76813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 9.13 59.84 0.55 1.77 16 2 N -0.59 -11.99 2.86 -184.23 -0.53 -12.52 16 3 C 0.24 6.11 5.17 -5.19 -0.03 6.08 16 4 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 C 0.55 11.18 6.51 -12.52 -0.08 11.10 16 13 O -0.54 -12.75 15.40 5.27 0.08 -12.67 16 14 C -0.17 -2.67 4.77 -104.81 -0.50 -3.17 16 15 C -0.04 -0.47 7.68 -39.15 -0.30 -0.78 16 16 C -0.08 -0.94 6.31 -39.56 -0.25 -1.19 16 17 Cl -0.07 -0.72 28.94 -51.86 -1.50 -2.22 16 18 C -0.08 -0.92 9.78 -39.46 -0.39 -1.31 16 19 C 0.02 0.23 7.30 -39.30 -0.29 -0.06 16 20 F -0.14 -1.72 16.64 2.25 0.04 -1.68 16 21 C 0.25 3.66 6.76 -83.48 -0.56 3.10 16 22 N -0.85 -12.23 8.90 32.60 0.29 -11.94 16 23 H 0.05 0.62 7.18 -51.93 -0.37 0.25 16 24 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 25 H 0.06 0.83 6.46 -51.93 -0.34 0.50 16 26 H 0.04 0.90 8.07 -51.92 -0.42 0.49 16 27 H 0.05 1.33 7.37 -51.93 -0.38 0.95 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.14 1.76 6.66 -52.49 -0.35 1.41 16 30 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.42 6.98 6.92 -40.82 -0.28 6.70 16 32 H 0.40 4.71 8.32 -40.82 -0.34 4.37 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -30.30 298.31 -6.54 -36.84 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -2.87 Total: 6.11 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.27 Total: 2.45 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.50 Total: -49.45 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.30 -6.54 -36.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280890806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.354 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds