Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48502 * 109.47416 * 239.99972 * 3 2 1 5 5 H 1.48501 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47321 * 119.99918 * 3 2 1 7 7 C 1.37877 * 120.00595 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00682 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99597 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47031 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47353 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00454 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99625 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00300 * 180.02562 * 12 11 10 15 15 S 1.81396 * 109.47078 * 180.02562 * 14 12 11 16 16 C 1.81406 * 102.99751 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47019 * 179.97438 * 16 15 14 18 18 C 1.33635 * 122.75319 * 269.73321 * 17 16 15 19 19 S 1.76192 * 107.92524 * 179.97438 * 18 17 16 20 20 C 1.70976 * 90.28427 * 0.27803 * 19 18 17 21 21 N 1.29027 * 110.16712 * 359.83656 * 20 19 18 22 22 H 0.96996 * 120.00268 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47211 * 59.99949 * 9 7 2 24 24 H 1.08997 * 109.47221 * 299.99948 * 9 7 2 25 25 H 1.09004 * 109.47323 * 60.00191 * 10 9 7 26 26 H 1.08997 * 109.47418 * 300.00246 * 10 9 7 27 27 H 0.96998 * 119.99222 * 359.97438 * 11 10 9 28 28 H 1.08993 * 109.47274 * 59.99800 * 14 12 11 29 29 H 1.09005 * 109.46975 * 299.99910 * 14 12 11 30 30 H 1.08994 * 109.47085 * 59.99990 * 16 15 14 31 31 H 1.08997 * 109.46976 * 299.99569 * 16 15 14 32 32 H 1.08001 * 126.03202 * 0.03585 * 18 17 16 33 33 H 1.08001 * 124.91761 * 179.84059 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.3997 -6.0979 0.0023 14 6 1.4334 -7.4031 0.0018 15 16 2.6123 -8.7818 0.0035 16 6 1.5340 -10.2406 0.0042 17 6 2.3781 -11.4891 0.0049 18 6 2.7788 -12.0916 -1.1186 19 16 3.7350 -13.5008 -0.6668 20 6 3.4941 -13.1444 0.9880 21 7 2.7761 -12.0798 1.1138 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8721 -3.6043 0.8906 26 1 2.8721 -3.6042 -0.8894 27 1 0.5430 -4.9308 0.0019 28 1 0.8072 -7.4611 -0.8883 29 1 0.8064 -7.4606 0.8916 30 1 0.9053 -10.2281 -0.8861 31 1 0.9045 -10.2266 0.8939 32 1 2.5566 -11.7707 -2.1256 33 1 3.8862 -13.7262 1.8091 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342620916.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = -23.132483 kcal Electronic energy + Delta-G solvation = -16485.438355 eV Core-core repulsion = 13570.151547 eV Total energy + Delta-G solvation = -2915.286808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.78975 -40.60791 -36.63514 -34.85079 -33.05885 -32.28745 -30.36452 -28.77997 -26.57587 -25.77028 -23.00967 -21.80595 -20.65756 -19.23136 -18.61815 -18.03745 -17.47380 -16.88347 -16.69299 -16.61149 -16.38053 -15.62281 -15.36562 -14.85475 -14.64571 -14.37008 -14.30605 -14.10122 -13.69986 -13.46633 -13.23015 -12.91639 -12.55147 -12.38629 -12.23902 -11.69382 -11.49839 -11.06667 -11.00017 -10.65156 -10.60820 -10.43228 -10.08149 -9.75599 -8.69903 -8.24832 -6.35149 -0.34080 0.36208 0.48438 0.76706 1.41577 1.43638 1.44155 1.51684 1.54936 2.02874 2.25971 2.44892 3.09888 3.20181 3.73116 3.94762 4.06233 4.08814 4.27884 4.42267 4.46386 4.47777 4.48397 4.63155 4.83983 5.07264 5.24772 5.46802 5.57416 5.77456 6.15283 6.53549 6.73524 6.77607 7.19875 7.34016 8.86620 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.070240 B = 0.002162 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.539814 B =12949.154337 C =13100.522013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.141 3.859 11 N -0.710 5.710 12 C 0.519 3.481 13 O -0.577 6.577 14 C -0.111 4.111 15 S -0.233 6.233 16 C -0.016 4.016 17 C 0.054 3.946 18 C -0.242 4.242 19 S 0.170 5.830 20 C 0.015 3.985 21 N -0.499 5.499 22 H 0.266 0.734 23 H 0.011 0.989 24 H 0.010 0.990 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.414 0.586 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.199 0.801 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -29.211 -2.159 29.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.362 5.362 12 C 0.305 3.695 13 O -0.457 6.457 14 C -0.262 4.262 15 S -0.006 6.006 16 C -0.167 4.167 17 C -0.079 4.079 18 C -0.384 4.384 19 S 0.423 5.577 20 C -0.283 4.283 21 N -0.213 5.213 22 H 0.075 0.925 23 H 0.030 0.970 24 H 0.029 0.971 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.251 0.749 28 H 0.162 0.838 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.121 0.879 32 H 0.216 0.784 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.807 -29.622 -2.124 29.830 hybrid contribution -1.882 1.871 0.180 2.660 sum 0.925 -27.751 -1.944 27.834 Atomic orbital electron populations 1.70037 1.07453 1.28084 1.50875 1.25857 0.95826 1.03046 0.94417 0.85515 0.78327 0.78210 0.79098 1.19372 1.20521 1.19435 1.21442 0.93565 0.92015 1.51707 0.92430 1.19129 0.94185 0.91555 0.96537 1.21241 0.95094 0.82108 0.99819 1.46011 1.11237 1.05131 1.73852 1.20340 0.87662 0.85694 0.75796 1.90713 1.15792 1.87891 1.51255 1.23461 1.00882 0.91725 1.10083 1.88074 1.15114 0.99165 1.98273 1.21894 0.97593 0.89398 1.07771 1.19555 1.02645 0.98138 0.87530 1.27234 1.05697 1.00882 1.04633 1.83914 1.46779 1.24416 1.02589 1.28918 1.00133 0.97303 1.01959 1.66088 1.13608 1.09325 1.32301 0.92504 0.97041 0.97141 0.93693 0.93511 0.74922 0.83754 0.84436 0.85680 0.87904 0.78422 0.75636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -30.65 9.11 25.60 0.23 -30.42 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.17 5.09 29.85 0.15 1.32 16 10 C 0.14 6.06 5.61 86.38 0.48 6.54 16 11 N -0.71 -23.76 5.56 -463.06 -2.57 -26.33 16 12 C 0.52 17.16 7.85 87.66 0.69 17.84 16 13 O -0.58 -24.74 15.86 -3.04 -0.05 -24.79 16 14 C -0.11 -2.41 6.42 71.23 0.46 -1.95 16 15 S -0.23 -6.04 20.86 -56.49 -1.18 -7.22 16 16 C -0.02 -0.28 6.37 71.24 0.45 0.17 16 17 C 0.05 1.02 6.00 41.52 0.25 1.27 16 18 C -0.24 -3.53 11.13 66.77 0.74 -2.79 16 19 S 0.17 1.89 23.22 -56.49 -1.31 0.58 16 20 C 0.01 0.21 12.23 130.65 1.60 1.80 16 21 N -0.50 -10.40 10.53 -191.54 -2.02 -12.42 16 22 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 23 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.41 11.24 8.47 -92.71 -0.79 10.45 16 28 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.12 1.41 8.12 -2.39 -0.02 1.40 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.23 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -74.78 321.19 1.04 -73.74 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.34 Total: 9.74 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 5.52 Total: -5.33 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -4.30 Total: -92.37 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.49 Total: -6.64 kcal Total: -74.78 1.04 -73.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342620916.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.603 kcal (2) G-P(sol) polarization free energy of solvation -74.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds