Wall clock time and date at job start Tue Mar 31 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46896 * 2 1 4 4 N 1.28920 * 124.84625 * 89.99719 * 3 2 1 5 5 C 1.31869 * 117.19356 * 179.97438 * 4 3 2 6 6 C 1.50699 * 122.84983 * 180.02562 * 5 4 3 7 7 C 1.34363 * 114.30430 * 359.97438 * 5 4 3 8 8 N 1.39791 * 126.07440 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00367 * 179.97438 * 8 7 5 10 10 O 1.21299 * 119.99870 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00035 * 179.97438 * 9 8 7 12 12 S 1.81000 * 109.47349 * 180.02562 * 11 9 8 13 13 C 1.76194 * 100.00068 * 180.02562 * 12 11 9 14 14 H 1.08006 * 120.00457 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00163 * 180.02562 * 13 12 11 16 16 N 1.31640 * 119.99650 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00461 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46935 * 59.99953 * 17 15 13 19 19 H 1.48500 * 109.47191 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47402 * 299.99953 * 17 15 13 21 21 S 1.70963 * 124.83927 * 270.30841 * 3 2 1 22 22 H 1.08998 * 109.47497 * 300.00610 * 1 2 3 23 23 H 1.09004 * 109.46822 * 60.00590 * 1 2 3 24 24 H 1.09000 * 109.46965 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47497 * 239.99390 * 2 1 3 26 26 H 1.09004 * 109.46822 * 119.99409 * 2 1 3 27 27 H 1.09001 * 109.47168 * 269.97813 * 6 5 4 28 28 H 1.09001 * 109.47087 * 29.97598 * 6 5 4 29 29 H 1.09007 * 109.47114 * 149.97929 * 6 5 4 30 30 H 0.97005 * 119.99226 * 359.97438 * 8 7 5 31 31 H 1.09001 * 109.47122 * 60.00223 * 11 9 8 32 32 H 1.09004 * 109.47371 * 300.00514 * 11 9 8 33 33 H 0.97001 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2777 2.1154 1.0580 5 6 2.7138 3.3474 0.8824 6 6 3.0406 4.2700 2.0283 7 6 2.8432 3.7100 -0.4049 8 7 3.2828 4.9529 -0.8697 9 6 3.3669 5.1857 -2.1946 10 8 3.0606 4.3168 -2.9836 11 6 3.8403 6.5258 -2.6956 12 16 3.8425 6.5268 -4.5056 13 6 4.4210 8.1630 -4.8099 14 1 4.6509 8.8173 -3.9820 15 6 4.5802 8.6116 -6.1138 16 7 4.2995 7.8143 -7.1230 17 14 5.1928 10.3464 -6.4365 18 1 6.5384 10.5167 -5.8317 19 1 5.2761 10.5775 -7.9011 20 1 4.2517 11.3240 -5.8334 21 16 2.3507 2.3442 -1.4032 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.1507 4.8357 2.3045 28 1 3.3776 3.6830 2.8827 29 1 3.8298 4.9587 1.7266 30 1 3.5274 5.6478 -0.2386 31 1 4.8499 6.7142 -2.3306 32 1 3.1713 7.3063 -2.3330 33 1 4.4112 8.1276 -8.0342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348285009.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:00 Heat of formation + Delta-G solvation = -7.034275 kcal Electronic energy + Delta-G solvation = -17247.849609 eV Core-core repulsion = 14333.260872 eV Total energy + Delta-G solvation = -2914.588737 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29313 -39.29536 -35.31922 -33.70834 -32.52253 -30.79549 -29.68876 -26.68306 -25.58093 -25.18060 -21.87643 -21.33470 -19.90924 -18.25690 -17.43916 -16.86962 -16.23201 -15.72119 -14.88641 -14.83109 -14.51982 -14.31677 -13.98265 -13.65107 -13.44706 -13.05865 -12.71508 -12.62110 -12.55554 -12.04006 -11.80746 -11.28496 -11.23701 -11.15210 -11.10489 -10.98270 -10.86243 -10.08702 -9.91744 -9.29616 -9.14859 -8.89288 -8.40619 -7.95603 -6.63543 -6.31015 -4.03734 0.77700 1.20137 1.91706 2.51430 2.72095 2.98851 3.18021 3.20259 3.23872 3.46039 4.10156 4.10513 4.80297 4.82538 4.99128 5.02353 5.04578 5.10325 5.34250 5.42983 5.47666 5.50743 5.64249 5.65730 5.73987 5.85888 5.90712 5.98799 6.04011 6.35068 7.11226 7.50315 7.83977 8.05809 8.25426 9.14322 10.76325 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.036986 B = 0.003393 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.856972 B = 8249.112802 C = 8897.665430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.024 4.024 4 N -0.451 5.451 5 C -0.001 4.001 6 C -0.070 4.070 7 C 0.006 3.994 8 N -0.633 5.633 9 C 0.523 3.477 10 O -0.483 6.483 11 C -0.150 4.150 12 S -0.052 6.052 13 C -0.539 4.539 14 H 0.074 0.926 15 C 0.075 3.925 16 N -0.867 5.867 17 Si 0.921 3.079 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.273 1.273 21 S 0.243 5.757 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.417 0.583 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -9.954 16.027 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.302 4.302 4 N -0.165 5.165 5 C -0.137 4.137 6 C -0.129 4.129 7 C -0.213 4.213 8 N -0.281 5.281 9 C 0.310 3.690 10 O -0.355 6.355 11 C -0.301 4.301 12 S 0.174 5.826 13 C -0.688 4.688 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.501 5.501 17 Si 0.747 3.253 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.199 1.199 21 S 0.495 5.505 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.255 0.745 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.700 -11.790 13.882 18.810 hybrid contribution 1.133 3.161 1.749 3.786 sum -3.567 -8.629 15.631 18.208 Atomic orbital electron populations 1.21772 0.93969 1.02157 1.02630 1.20063 0.96352 0.87892 1.03689 1.27153 1.06699 1.02460 0.93876 1.66053 1.13637 1.04602 1.32216 1.19931 1.08417 0.93172 0.92194 1.20189 1.01270 0.96570 0.94911 1.23562 1.08100 0.93491 0.96142 1.43135 1.64862 1.11651 1.08426 1.20849 0.76941 0.90624 0.80567 1.90664 1.45870 1.45442 1.53542 1.23500 1.04280 0.94428 1.07862 1.85442 1.87178 1.19842 0.90096 1.22805 1.52036 0.98765 0.95147 0.90787 1.25000 0.94858 0.98651 0.94970 1.69999 1.45079 1.35904 0.99159 0.86194 0.79304 0.82394 0.77451 1.19872 1.20734 1.19866 1.85055 1.59112 1.00645 1.05656 0.92184 0.92327 0.91720 0.89968 0.89419 0.91107 0.90563 0.91626 0.74473 0.88416 0.88412 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.88 16 2 C -0.04 -0.37 6.51 -27.88 -0.18 -0.56 16 3 C -0.02 -0.31 6.63 -13.50 -0.09 -0.40 16 4 N -0.45 -6.36 10.53 -7.90 -0.08 -6.45 16 5 C 0.00 -0.02 6.77 -83.94 -0.57 -0.58 16 6 C -0.07 -0.68 10.07 36.01 0.36 -0.32 16 7 C 0.01 0.09 7.18 -15.28 -0.11 -0.02 16 8 N -0.63 -8.76 5.40 -10.60 -0.06 -8.82 16 9 C 0.52 9.25 7.81 -10.99 -0.09 9.16 16 10 O -0.48 -10.08 13.49 5.54 0.07 -10.00 16 11 C -0.15 -2.81 6.16 36.00 0.22 -2.59 16 12 S -0.05 -1.34 20.57 -107.50 -2.21 -3.55 16 13 C -0.54 -14.79 9.50 30.94 0.29 -14.50 16 14 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 15 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 16 N -0.87 -25.43 13.22 55.49 0.73 -24.70 16 17 Si 0.92 20.82 29.55 -169.99 -5.02 15.79 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 S 0.24 3.56 20.42 -107.50 -2.20 1.37 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.52 7.21 -51.92 -0.37 0.15 16 30 H 0.42 4.27 7.62 -40.82 -0.31 3.96 16 31 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 32 H 0.10 1.65 8.14 -51.91 -0.42 1.23 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -33.10 314.76 -7.94 -41.04 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.03 Total: -0.72 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 0.11 Total: -8.70 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.59 Total: -39.96 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -4.41 Total: -2.19 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.10 -7.94 -41.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348285009.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.006 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds