Wall clock time and date at job start Tue Mar 31 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46896 * 2 1 4 4 N 1.28920 * 124.84625 * 89.99719 * 3 2 1 5 5 C 1.31869 * 117.19356 * 179.97438 * 4 3 2 6 6 C 1.50699 * 122.84983 * 180.02562 * 5 4 3 7 7 C 1.34363 * 114.30430 * 359.97438 * 5 4 3 8 8 N 1.39791 * 126.07440 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00367 * 179.97438 * 8 7 5 10 10 O 1.21299 * 119.99870 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00035 * 179.97438 * 9 8 7 12 12 S 1.81000 * 109.47349 * 180.02562 * 11 9 8 13 13 C 1.76194 * 100.00068 * 180.02562 * 12 11 9 14 14 H 1.08006 * 120.00457 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00163 * 180.02562 * 13 12 11 16 16 N 1.31640 * 119.99650 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00461 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46935 * 59.99953 * 17 15 13 19 19 H 1.48500 * 109.47191 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47402 * 299.99953 * 17 15 13 21 21 S 1.70963 * 124.83927 * 270.30841 * 3 2 1 22 22 H 1.08998 * 109.47497 * 300.00610 * 1 2 3 23 23 H 1.09004 * 109.46822 * 60.00590 * 1 2 3 24 24 H 1.09000 * 109.46965 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47497 * 239.99390 * 2 1 3 26 26 H 1.09004 * 109.46822 * 119.99409 * 2 1 3 27 27 H 1.09001 * 109.47168 * 269.97813 * 6 5 4 28 28 H 1.09001 * 109.47087 * 29.97598 * 6 5 4 29 29 H 1.09007 * 109.47114 * 149.97929 * 6 5 4 30 30 H 0.97005 * 119.99226 * 359.97438 * 8 7 5 31 31 H 1.09001 * 109.47122 * 60.00223 * 11 9 8 32 32 H 1.09004 * 109.47371 * 300.00514 * 11 9 8 33 33 H 0.97001 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2777 2.1154 1.0580 5 6 2.7138 3.3474 0.8824 6 6 3.0406 4.2700 2.0283 7 6 2.8432 3.7100 -0.4049 8 7 3.2828 4.9529 -0.8697 9 6 3.3669 5.1857 -2.1946 10 8 3.0606 4.3168 -2.9836 11 6 3.8403 6.5258 -2.6956 12 16 3.8425 6.5268 -4.5056 13 6 4.4210 8.1630 -4.8099 14 1 4.6509 8.8173 -3.9820 15 6 4.5802 8.6116 -6.1138 16 7 4.2995 7.8143 -7.1230 17 14 5.1928 10.3464 -6.4365 18 1 6.5384 10.5167 -5.8317 19 1 5.2761 10.5775 -7.9011 20 1 4.2517 11.3240 -5.8334 21 16 2.3507 2.3442 -1.4032 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.1507 4.8357 2.3045 28 1 3.3776 3.6830 2.8827 29 1 3.8298 4.9587 1.7266 30 1 3.5274 5.6478 -0.2386 31 1 4.8499 6.7142 -2.3306 32 1 3.1713 7.3063 -2.3330 33 1 4.4112 8.1276 -8.0342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348285009.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:00 Heat of formation + Delta-G solvation = -29.437453 kcal Electronic energy + Delta-G solvation = -17248.821084 eV Core-core repulsion = 14333.260872 eV Total energy + Delta-G solvation = -2915.560212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48375 -40.50733 -36.48742 -34.65356 -34.59302 -31.86588 -30.92522 -27.90908 -27.48188 -26.11795 -22.76374 -22.63657 -21.04858 -19.94108 -18.90920 -18.01676 -17.42598 -16.99138 -16.88737 -16.11956 -15.92690 -15.45857 -15.11761 -14.80430 -14.55870 -14.38114 -13.96980 -13.82228 -13.34024 -13.19349 -12.98430 -12.87302 -12.67497 -12.54910 -12.29180 -12.14755 -12.00767 -11.80608 -11.39876 -11.13956 -10.42506 -10.33496 -10.03088 -9.04696 -8.69160 -8.36360 -6.14875 -0.32533 0.13543 0.83038 1.17001 1.24909 1.42890 1.43915 1.53707 1.86506 1.98491 2.24791 2.98531 3.17935 3.23837 3.74909 3.93352 4.04576 4.19833 4.26481 4.36650 4.41501 4.52168 4.73009 4.76345 4.90510 5.00465 5.01006 5.11609 5.30658 5.39274 5.41138 6.00415 6.18289 6.75621 6.80451 7.05504 8.72407 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.036986 B = 0.003393 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.856972 B = 8249.112802 C = 8897.665430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.043 4.043 3 C -0.002 4.002 4 N -0.471 5.471 5 C 0.010 3.990 6 C -0.072 4.072 7 C -0.021 4.021 8 N -0.611 5.611 9 C 0.525 3.475 10 O -0.523 6.523 11 C -0.125 4.125 12 S -0.140 6.140 13 C -0.548 4.548 14 H 0.086 0.914 15 C 0.015 3.985 16 N -0.911 5.911 17 Si 0.997 3.003 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.262 1.262 21 S 0.193 5.807 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.435 0.565 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 -9.212 18.366 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.281 4.281 4 N -0.186 5.186 5 C -0.125 4.125 6 C -0.131 4.131 7 C -0.239 4.239 8 N -0.260 5.260 9 C 0.312 3.688 10 O -0.398 6.398 11 C -0.276 4.276 12 S 0.087 5.913 13 C -0.696 4.696 14 H 0.104 0.896 15 C -0.190 4.190 16 N -0.547 5.547 17 Si 0.819 3.181 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.186 1.186 21 S 0.446 5.554 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.108 0.892 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.277 0.723 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.422 -11.040 16.280 20.161 hybrid contribution 0.990 2.773 1.208 3.183 sum -3.432 -8.267 17.488 19.645 Atomic orbital electron populations 1.21753 0.92966 1.03580 1.01827 1.20302 0.97103 0.85933 1.05034 1.27740 1.04450 1.03304 0.92559 1.66188 1.14857 1.05176 1.32333 1.20531 1.06051 0.93214 0.92734 1.20371 1.02612 0.96410 0.93731 1.23567 1.10539 0.93524 0.96284 1.42682 1.64008 1.12059 1.07281 1.20580 0.76846 0.89769 0.81577 1.90668 1.47817 1.46380 1.54960 1.23293 1.06369 0.95933 1.01960 1.85608 1.87539 1.20541 0.97588 1.23180 1.51600 0.98978 0.95838 0.89576 1.26105 0.94891 1.03312 0.94706 1.70167 1.46635 1.38259 0.99625 0.85019 0.79154 0.76615 0.77326 1.18651 1.20570 1.18637 1.85240 1.60093 1.02298 1.07742 0.93001 0.93082 0.89230 0.88449 0.88167 0.89695 0.89920 0.89583 0.72317 0.86116 0.86132 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.89 71.98 0.71 -1.48 16 2 C -0.04 -0.75 6.51 29.85 0.19 -0.56 16 3 C 0.00 -0.06 6.63 88.54 0.59 0.53 16 4 N -0.47 -12.57 10.53 -178.92 -1.88 -14.45 16 5 C 0.01 0.26 6.77 41.67 0.28 0.54 16 6 C -0.07 -1.20 10.07 71.24 0.72 -0.48 16 7 C -0.02 -0.60 7.18 82.54 0.59 -0.01 16 8 N -0.61 -16.00 5.40 -305.84 -1.65 -17.65 16 9 C 0.53 18.33 7.81 87.66 0.68 19.02 16 10 O -0.52 -22.37 13.49 -3.09 -0.04 -22.41 16 11 C -0.12 -4.52 6.16 71.24 0.44 -4.09 16 12 S -0.14 -7.37 20.57 -56.49 -1.16 -8.53 16 13 C -0.55 -30.03 9.50 67.95 0.65 -29.38 16 14 H 0.09 4.33 7.80 -2.91 -0.02 4.30 16 15 C 0.01 0.82 5.49 84.86 0.47 1.29 16 16 N -0.91 -54.60 13.22 21.65 0.29 -54.32 16 17 Si 1.00 42.32 29.55 68.60 2.03 44.35 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 21 S 0.19 5.71 20.42 -56.49 -1.15 4.56 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.07 7.21 -2.38 -0.02 1.05 16 30 H 0.44 7.74 7.62 -92.70 -0.71 7.03 16 31 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 32 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 33 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -73.42 314.76 2.17 -71.25 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.43 Total: 11.82 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 5.32 Total: -14.61 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -3.25 Total: -86.42 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.04 Total: -22.41 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.32 Total: -3.97 kcal Total: -73.42 2.17 -71.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348285009.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.811 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds