Wall clock time and date at job start Tue Mar 31 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99682 * 2 1 4 4 H 1.09001 * 109.47626 * 30.00074 * 3 2 1 5 5 C 1.53006 * 109.47036 * 149.99938 * 3 2 1 6 6 S 1.81399 * 109.47007 * 299.99430 * 5 3 2 7 7 C 1.81393 * 103.00238 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.47519 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99595 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00252 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99976 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99769 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47476 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46947 * 120.00423 * 12 10 8 15 15 H 1.48507 * 109.46864 * 239.99896 * 12 10 8 16 16 C 1.50699 * 109.47044 * 269.99525 * 3 2 1 17 17 C 1.38243 * 119.98768 * 324.72872 * 16 3 2 18 18 C 1.38213 * 120.01389 * 179.72425 * 17 16 3 19 19 C 1.38350 * 119.98521 * 0.54889 * 18 17 16 20 20 Cl 1.73604 * 120.01401 * 179.74556 * 19 18 17 21 21 C 1.38350 * 119.97572 * 359.72795 * 19 18 17 22 22 C 1.38217 * 119.98694 * 359.97438 * 21 19 18 23 23 H 1.09001 * 109.47200 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47333 * 300.00404 * 1 2 3 25 25 H 1.08999 * 109.46675 * 60.00707 * 1 2 3 26 26 H 1.08993 * 109.46955 * 59.99914 * 5 3 2 27 27 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 28 28 H 1.08997 * 109.47504 * 300.00249 * 7 6 5 29 29 H 1.09001 * 109.46984 * 59.99943 * 7 6 5 30 30 H 0.97000 * 120.00026 * 179.97438 * 11 10 8 31 31 H 1.08000 * 119.99014 * 359.97438 * 17 16 3 32 32 H 1.07993 * 120.00858 * 180.27414 * 18 17 16 33 33 H 1.08004 * 120.00958 * 179.97438 * 21 19 18 34 34 H 1.07994 * 119.99715 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2633 0.7213 6 16 3.1129 0.7111 2.4316 7 6 4.7948 0.7246 3.1107 8 6 4.7588 0.2814 4.5507 9 1 3.8182 0.0175 5.0110 10 6 5.9268 0.2118 5.2800 11 7 7.0723 0.5327 4.7192 12 14 5.8820 -0.3369 7.0650 13 1 4.4813 -0.6387 7.4551 14 1 6.7147 -1.5555 7.2293 15 1 6.4146 0.7468 7.9295 16 6 2.2146 1.7643 -1.4208 17 6 2.5651 0.8515 -2.3980 18 6 2.7471 1.2707 -3.7024 19 6 2.5895 2.6062 -4.0278 20 17 2.8245 3.1347 -5.6647 21 6 2.2443 3.5202 -3.0483 22 6 2.0565 3.0988 -1.7454 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 4.0241 0.5694 0.2075 27 1 3.8024 2.2590 0.7209 28 1 5.4239 0.0440 2.5371 29 1 5.2027 1.7337 3.0509 30 1 7.8940 0.4841 5.2324 31 1 2.6928 -0.1902 -2.1429 32 1 3.0167 0.5568 -4.4666 33 1 2.1215 4.5629 -3.3017 34 1 1.7866 3.8120 -0.9808 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:34 Heat of formation + Delta-G solvation = -40.084215 kcal Electronic energy + Delta-G solvation = -17241.794014 eV Core-core repulsion = 14291.435666 eV Total energy + Delta-G solvation = -2950.358348 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.054 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88574 -37.77274 -36.55721 -33.12758 -32.68348 -31.25973 -29.34793 -28.49706 -26.38306 -24.04931 -23.00037 -22.88646 -20.96722 -17.55345 -16.75547 -16.56247 -16.15626 -15.43552 -15.04280 -14.80188 -14.64164 -14.26254 -13.68815 -13.67062 -13.50554 -13.04411 -12.57548 -12.42213 -12.15835 -12.00227 -11.80797 -11.56685 -11.45218 -11.09707 -10.91924 -10.83493 -10.64282 -9.99994 -9.70023 -9.49138 -9.23756 -8.82060 -8.78122 -8.60554 -6.61404 -6.18038 -4.21870 0.88498 1.09998 1.90135 2.61961 3.25828 3.32978 3.39259 3.41413 3.75579 3.89933 4.36679 4.59933 4.64502 4.68892 5.08222 5.13994 5.17723 5.19215 5.30057 5.41792 5.47708 5.47819 5.65946 5.74425 5.77297 5.98253 6.02928 6.08879 6.30909 6.58674 7.11310 7.14084 7.22523 7.76869 8.03287 8.80321 9.41052 10.93439 Molecular weight = 286.05amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.003119 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.395685 B = 8974.011155 C = 9600.048468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.150 3.850 4 H 0.078 0.922 5 C -0.087 4.087 6 S -0.289 6.289 7 C 0.088 3.912 8 C -0.510 4.510 9 H 0.068 0.932 10 C 0.064 3.936 11 N -0.893 5.893 12 Si 0.906 3.094 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.282 1.282 16 C -0.100 4.100 17 C -0.080 4.080 18 C -0.113 4.113 19 C -0.035 4.035 20 Cl -0.077 7.077 21 C -0.113 4.113 22 C -0.098 4.098 23 H 0.086 0.914 24 H 0.044 0.956 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.265 0.735 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.257 4.456 -17.533 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.091 3.909 4 H 0.096 0.904 5 C -0.235 4.235 6 S -0.062 6.062 7 C -0.059 4.059 8 C -0.549 4.549 9 H 0.086 0.914 10 C -0.139 4.139 11 N -0.532 5.532 12 Si 0.733 3.267 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.208 1.208 16 C -0.102 4.102 17 C -0.098 4.098 18 C -0.132 4.132 19 C -0.062 4.062 20 Cl -0.048 7.048 21 C -0.132 4.132 22 C -0.116 4.116 23 H 0.104 0.896 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.876 4.069 -17.138 21.244 hybrid contribution 1.199 0.392 0.067 1.264 sum -10.676 4.462 -17.071 20.623 Atomic orbital electron populations 1.22776 0.81288 1.02742 0.99700 1.88021 1.19398 1.26033 1.94553 1.20624 0.94664 0.85900 0.89746 0.90359 1.23339 0.97884 1.04210 0.98053 1.86643 1.22885 1.89552 1.07106 1.21057 0.85946 1.00086 0.98801 1.20717 0.94099 1.45897 0.94185 0.91428 1.24971 0.94966 0.95030 0.98981 1.69966 0.98223 1.47947 1.37037 0.86305 0.78409 0.78314 0.83685 1.19411 1.20740 1.20763 1.20595 0.99292 0.93798 0.96527 1.21046 0.96753 1.00724 0.91268 1.21086 1.00894 0.93913 0.97314 1.20967 1.04751 0.94602 0.85863 1.98366 1.95498 1.90722 1.20244 1.20999 1.00561 0.99485 0.92108 1.21027 0.99375 0.95371 0.95846 0.89599 0.93689 0.94593 0.90082 0.89663 0.94637 0.94778 0.92587 0.84258 0.84919 0.84913 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.81 101.05 1.09 1.45 16 2 O -0.36 -5.28 9.10 -35.23 -0.32 -5.60 16 3 C 0.15 2.07 2.37 -27.88 -0.07 2.00 16 4 H 0.08 1.02 7.70 -51.93 -0.40 0.62 16 5 C -0.09 -1.46 5.65 37.16 0.21 -1.25 16 6 S -0.29 -6.27 21.30 -107.50 -2.29 -8.56 16 7 C 0.09 2.30 5.70 36.01 0.21 2.51 16 8 C -0.51 -14.46 9.13 -34.44 -0.31 -14.77 16 9 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 10 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 11 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 12 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 C -0.10 -1.20 4.96 -104.62 -0.52 -1.72 16 17 C -0.08 -0.92 9.35 -39.59 -0.37 -1.29 16 18 C -0.11 -1.19 9.83 -39.55 -0.39 -1.58 16 19 C -0.04 -0.37 6.32 -39.50 -0.25 -0.62 16 20 Cl -0.08 -0.75 28.96 -51.86 -1.50 -2.25 16 21 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 22 C -0.10 -1.02 9.68 -39.59 -0.38 -1.41 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.14 1.61 7.64 -52.49 -0.40 1.21 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -30.05 325.04 -9.33 -39.38 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.56 Total: -2.41 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -1.27 Total: -16.48 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.74 Total: -25.39 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.32 Total: -5.60 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -2.29 Total: -8.56 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.05 -9.33 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.706 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds