Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48496 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47188 * 299.99622 * 3 2 1 6 6 H 1.48497 * 109.47104 * 59.99725 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38459 * 120.01665 * 269.72185 * 15 14 13 17 17 F 1.35106 * 120.01961 * 0.02562 * 16 15 14 18 18 C 1.38449 * 119.95974 * 179.72847 * 16 15 14 19 19 C 1.38227 * 120.00076 * 0.52590 * 18 16 15 20 20 C 1.38197 * 120.03851 * 359.77033 * 19 18 16 21 21 C 1.38289 * 120.02367 * 90.00055 * 15 14 13 22 22 Cl 1.73604 * 119.99490 * 0.02562 * 21 15 14 23 23 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 25 25 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 26 26 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 27 27 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 28 28 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 29 29 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 30 30 H 1.08001 * 119.99674 * 180.27767 * 18 16 15 31 31 H 1.07999 * 119.97743 * 179.75053 * 19 18 16 32 32 H 1.08001 * 119.98447 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5581 -5.1056 0.0011 13 7 2.6294 -5.9079 0.0016 14 6 2.1410 -7.2890 -0.0040 15 6 3.3131 -8.2362 -0.0090 16 6 3.8472 -8.6709 -1.2102 17 9 3.3182 -8.2457 -2.3785 18 6 4.9276 -9.5367 -1.2135 19 6 5.4655 -9.9752 -0.0180 20 6 4.9285 -9.5461 1.1809 21 6 3.8521 -8.6763 1.1860 22 17 3.1781 -8.1381 2.6926 23 1 -0.4849 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 3.1566 -3.4356 0.0009 27 1 3.5831 -5.7306 0.0012 28 1 1.5361 -7.4641 0.8857 29 1 1.5347 -7.4565 -0.8942 30 1 5.3476 -9.8726 -2.1501 31 1 6.3057 -10.6537 -0.0210 32 1 5.3492 -9.8896 2.1144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426453569.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = -61.813713 kcal Electronic energy + Delta-G solvation = -19394.634363 eV Core-core repulsion = 15909.413328 eV Total energy + Delta-G solvation = -3485.221034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.22656 -39.83979 -38.90554 -36.75167 -34.95779 -33.96685 -32.34963 -31.35418 -30.82090 -27.46726 -25.81808 -23.24095 -22.66337 -21.81215 -20.16798 -18.31956 -17.94754 -17.15541 -16.52479 -16.05584 -15.79116 -15.45172 -15.08261 -14.79311 -14.59170 -13.97669 -13.80222 -13.63167 -13.16599 -13.00314 -12.96081 -12.21864 -11.93610 -11.71896 -11.69038 -11.62355 -11.08943 -10.89431 -10.87466 -10.27111 -9.60954 -9.31476 -9.16989 -9.10075 -8.76137 -8.65172 -7.71359 -6.11857 -4.18038 0.51985 0.59963 1.72733 2.90550 3.26594 3.33149 3.36366 3.55892 3.83612 3.99283 4.17945 4.36401 4.38336 4.42910 4.74292 4.97891 5.18348 5.24286 5.31792 5.42764 5.58704 5.74116 5.78564 5.85992 6.27489 6.80632 7.14811 7.56287 7.59289 7.62008 7.94275 8.08031 8.80801 8.98183 9.37219 9.52123 10.98511 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.003464 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.339557 B = 8080.298066 C = 8379.724936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.728 5.728 11 C 0.696 3.304 12 O -0.599 6.599 13 N -0.750 5.750 14 C 0.180 3.820 15 C -0.133 4.133 16 C 0.132 3.868 17 F -0.124 7.124 18 C -0.154 4.154 19 C -0.074 4.074 20 C -0.125 4.125 21 C 0.006 3.994 22 Cl -0.042 7.042 23 H 0.265 0.735 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.386 0.614 27 H 0.391 0.609 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.621 -22.037 1.102 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.396 3.604 12 O -0.478 6.478 13 N -0.408 5.408 14 C 0.055 3.945 15 C -0.135 4.135 16 C 0.112 3.888 17 F -0.102 7.102 18 C -0.173 4.173 19 C -0.092 4.092 20 C -0.144 4.144 21 C -0.022 4.022 22 Cl -0.012 7.012 23 H 0.074 0.926 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.218 0.782 27 H 0.224 0.776 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.196 -21.985 1.197 25.170 hybrid contribution 1.193 1.157 -0.108 1.665 sum 13.389 -20.828 1.088 24.784 Atomic orbital electron populations 1.69995 1.06078 1.27104 1.49133 1.24948 0.94911 0.99389 0.94826 0.86359 0.79802 0.83013 0.77704 1.19681 1.20827 1.20835 1.21270 0.93302 0.90438 1.52856 0.91911 1.18990 0.87781 0.81033 0.97632 1.45696 1.10785 1.04302 1.77236 1.16083 0.85074 0.80952 0.78330 1.90877 1.14147 1.84163 1.58628 1.45046 1.08874 1.04190 1.82686 1.19825 0.91711 0.78921 1.04024 1.19887 1.00562 1.02084 0.90944 1.17398 0.94077 0.96445 0.80887 1.91577 1.85234 1.88225 1.45156 1.21286 0.96499 0.99081 1.00429 1.21002 0.99132 0.98368 0.90717 1.21150 0.95657 0.97838 0.99731 1.20694 0.96133 0.98035 0.87336 1.98428 1.84286 1.88868 1.29644 0.92550 0.95717 0.95710 0.78179 0.77588 0.89853 0.90404 0.83892 0.83904 0.84045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.27 7.32 5.43 -5.19 -0.03 7.29 16 10 N -0.73 -16.15 5.55 -66.41 -0.37 -16.52 16 11 C 0.70 14.97 8.57 -86.92 -0.74 14.22 16 12 O -0.60 -15.47 16.34 5.28 0.09 -15.39 16 13 N -0.75 -12.03 5.55 -66.41 -0.37 -12.40 16 14 C 0.18 2.58 5.23 -5.19 -0.03 2.56 16 15 C -0.13 -1.48 5.26 -104.52 -0.55 -2.03 16 16 C 0.13 1.36 7.24 -39.42 -0.29 1.08 16 17 F -0.12 -1.51 16.47 2.25 0.04 -1.47 16 18 C -0.15 -1.13 10.03 -39.51 -0.40 -1.53 16 19 C -0.07 -0.43 10.04 -39.60 -0.40 -0.83 16 20 C -0.12 -0.89 9.83 -39.54 -0.39 -1.28 16 21 C 0.01 0.06 6.31 -39.51 -0.25 -0.19 16 22 Cl -0.04 -0.45 27.30 -51.86 -1.42 -1.87 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.39 7.36 8.34 -40.82 -0.34 7.02 16 27 H 0.39 5.26 8.48 -40.82 -0.35 4.92 16 28 H 0.08 1.26 6.90 -51.93 -0.36 0.90 16 29 H 0.08 1.20 7.63 -51.93 -0.40 0.80 16 30 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 32 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -33.63 305.74 -8.28 -41.91 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -3.09 Total: 5.14 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -3.48 Total: 5.65 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.00 Total: -54.72 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.42 Total: -1.87 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.63 -8.28 -41.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426453569.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.901 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds