Wall clock time and date at job start Tue Mar 31 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38366 * 120.04394 * 2 1 4 4 F 1.35100 * 119.97789 * 359.97438 * 3 2 1 5 5 C 1.38472 * 120.04647 * 180.02562 * 3 2 1 6 6 C 1.38292 * 120.13166 * 0.02562 * 5 3 2 7 7 C 1.38174 * 120.08142 * 359.97438 * 6 5 3 8 8 Cl 1.73602 * 120.02123 * 180.02562 * 7 6 5 9 9 C 1.38818 * 120.04345 * 180.28083 * 2 1 3 10 10 N 1.39736 * 120.06512 * 0.02562 * 9 2 1 11 11 C 1.46901 * 111.00097 * 264.10312 * 10 9 2 12 12 C 1.50699 * 109.47301 * 175.01570 * 11 10 9 13 13 O 1.21295 * 119.99804 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00023 * 180.02562 * 12 11 10 15 15 C 1.37104 * 119.99969 * 180.02562 * 14 12 11 16 16 H 1.08008 * 119.99878 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00411 * 179.97438 * 15 14 12 18 18 N 1.31417 * 119.99623 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00214 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46814 * 90.00194 * 19 17 15 21 21 H 1.48499 * 109.46871 * 209.99876 * 19 17 15 22 22 H 1.48498 * 109.47193 * 329.99885 * 19 17 15 23 23 H 1.09003 * 109.47483 * 90.00383 * 1 2 3 24 24 H 1.09008 * 109.47067 * 210.00090 * 1 2 3 25 25 H 1.08998 * 109.47377 * 330.00200 * 1 2 3 26 26 H 1.08003 * 119.93659 * 179.97438 * 5 3 2 27 27 H 1.07998 * 119.96007 * 179.97438 * 6 5 3 28 28 H 1.00903 * 111.00047 * 140.15386 * 10 9 2 29 29 H 1.08997 * 109.47108 * 295.01986 * 11 10 9 30 30 H 1.09005 * 109.46629 * 55.01933 * 11 10 9 31 31 H 0.96989 * 120.00337 * 359.97438 * 14 12 11 32 32 H 0.96996 * 119.99676 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1997 1.1978 0.0000 4 9 1.5246 2.3680 -0.0005 5 6 3.5844 1.1978 -0.0005 6 6 4.2787 0.0018 -0.0016 7 6 3.5923 -1.1974 -0.0016 8 17 4.4654 -2.6979 -0.0023 9 6 2.2019 -1.2017 -0.0059 10 7 1.5056 -2.4131 -0.0124 11 6 1.3648 -2.9467 1.3490 12 6 0.5067 -4.1852 1.3170 13 8 0.0562 -4.5837 0.2637 14 7 0.2390 -4.8492 2.4588 15 6 -0.5413 -5.9762 2.4295 16 1 -0.9417 -6.3316 1.4915 17 6 -0.8170 -6.6612 3.6066 18 7 -0.3293 -6.2290 4.7479 19 14 -1.8807 -8.1962 3.5668 20 1 -1.0200 -9.3896 3.3660 21 1 -2.6128 -8.3245 4.8524 22 1 -2.8546 -8.0948 2.4504 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 4.1233 2.1338 -0.0010 27 1 5.3586 0.0051 -0.0024 28 1 1.9526 -3.0839 -0.6192 29 1 2.3491 -3.1969 1.7448 30 1 0.8966 -2.1967 1.9866 31 1 0.5988 -4.5303 3.3011 32 1 -0.5221 -6.7070 5.5696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432702739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:21 Heat of formation + Delta-G solvation = -82.135281 kcal Electronic energy + Delta-G solvation = -19740.094501 eV Core-core repulsion = 16253.992258 eV Total energy + Delta-G solvation = -3486.102244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.98256 -41.03560 -39.91507 -37.58994 -36.62857 -35.81273 -33.51795 -33.27351 -30.78965 -28.65278 -27.53921 -25.93183 -23.34079 -22.55159 -21.20975 -19.95369 -19.02972 -18.09720 -17.64092 -17.29434 -16.98881 -16.64986 -16.32478 -16.07942 -15.58594 -15.32963 -14.82460 -14.46696 -14.26528 -14.10844 -13.89424 -13.86427 -13.49782 -13.31599 -12.88609 -12.87131 -12.44789 -12.41616 -12.18422 -12.11976 -12.00819 -11.51785 -10.64095 -10.10935 -10.02596 -9.64126 -9.43757 -8.47217 -5.96261 -0.18327 -0.00223 0.98079 1.38049 1.42597 1.55270 2.00757 2.21244 2.30917 2.65122 3.17532 3.19354 3.40568 3.58712 3.80288 4.04973 4.10452 4.29375 4.35605 4.41353 4.44940 4.71092 4.74110 4.95145 4.98406 5.11664 5.24495 5.40657 5.52777 5.77984 6.00800 6.21257 6.57322 7.10893 7.52657 8.07238 8.70129 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.023983 B = 0.004016 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.211944 B = 6969.834270 C = 7609.287040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.102 4.102 3 C 0.102 3.898 4 F -0.134 7.134 5 C -0.132 4.132 6 C -0.070 4.070 7 C -0.091 4.091 8 Cl -0.063 7.063 9 C 0.120 3.880 10 N -0.629 5.629 11 C 0.073 3.927 12 C 0.442 3.558 13 O -0.617 6.617 14 N -0.570 5.570 15 C -0.333 4.333 16 H 0.081 0.919 17 C -0.011 4.011 18 N -0.919 5.919 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.272 1.272 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.177 0.823 27 H 0.171 0.829 28 H 0.361 0.639 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.396 0.604 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.577 15.549 -5.766 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C 0.082 3.918 4 F -0.112 7.112 5 C -0.151 4.151 6 C -0.088 4.088 7 C -0.120 4.120 8 Cl -0.034 7.034 9 C 0.023 3.977 10 N -0.260 5.260 11 C -0.057 4.057 12 C 0.229 3.771 13 O -0.503 6.503 14 N -0.207 5.207 15 C -0.463 4.463 16 H 0.099 0.901 17 C -0.211 4.211 18 N -0.560 5.560 19 Si 0.817 3.183 20 H -0.196 1.196 21 H -0.196 1.196 22 H -0.197 1.197 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.195 0.805 27 H 0.189 0.811 28 H 0.184 0.816 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.230 0.770 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.660 15.359 -6.258 19.193 hybrid contribution 0.383 -1.068 0.621 1.293 sum 10.043 14.291 -5.637 18.353 Atomic orbital electron populations 1.20572 0.89135 1.03027 1.03273 1.19808 0.97905 0.90151 1.02544 1.17552 0.90653 0.80347 1.03245 1.91498 1.80614 1.45346 1.93787 1.21386 0.91174 1.00556 1.02006 1.21086 1.01961 0.88575 0.97227 1.21997 0.92231 0.89037 1.08760 1.98398 1.75607 1.32449 1.96916 1.18250 0.88356 0.91170 0.99973 1.57292 1.54338 1.04499 1.09828 1.21538 0.99144 0.94942 0.90079 1.20529 0.85574 0.87002 0.83998 1.90507 1.57468 1.70751 1.31616 1.41887 1.45714 1.24642 1.08443 1.19677 1.27801 1.03549 0.95263 0.90134 1.26037 0.98949 1.02105 0.93983 1.69675 1.45635 1.41781 0.98924 0.84927 0.78044 0.77477 0.77900 1.19637 1.19556 1.19709 0.90381 0.91587 0.90500 0.80525 0.81126 0.81593 0.91195 0.87726 0.76989 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.58 71.23 0.68 -1.96 16 2 C -0.10 -2.54 5.90 -19.70 -0.12 -2.66 16 3 C 0.10 2.13 7.24 22.36 0.16 2.29 16 4 F -0.13 -2.84 16.47 44.97 0.74 -2.10 16 5 C -0.13 -2.05 10.02 22.34 0.22 -1.82 16 6 C -0.07 -1.14 9.82 22.27 0.22 -0.92 16 7 C -0.09 -2.07 6.31 22.45 0.14 -1.93 16 8 Cl -0.06 -1.50 26.97 -2.72 -0.07 -1.57 16 9 C 0.12 3.24 5.24 38.21 0.20 3.44 16 10 N -0.63 -20.70 4.77 -342.16 -1.63 -22.34 16 11 C 0.07 2.58 5.72 85.56 0.49 3.07 16 12 C 0.44 21.02 7.83 87.66 0.69 21.71 16 13 O -0.62 -34.03 15.89 -3.08 -0.05 -34.08 16 14 N -0.57 -29.22 5.29 -306.98 -1.62 -30.84 16 15 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 16 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 17 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 18 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 19 Si 0.99 42.74 29.55 68.60 2.03 44.76 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.07 1.98 7.05 -2.38 -0.02 1.96 16 25 H 0.08 1.71 7.64 -2.39 -0.02 1.69 16 26 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 27 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 28 H 0.36 12.42 7.62 -89.69 -0.68 11.74 16 29 H 0.07 2.28 7.45 -2.39 -0.02 2.26 16 30 H 0.10 3.40 7.91 -2.38 -0.02 3.38 16 31 H 0.40 19.35 7.90 -92.72 -0.73 18.62 16 32 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -64.77 301.46 3.42 -61.35 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -0.22 Total: 30.89 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 3.97 Total: 3.06 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -2.97 Total: -102.31 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.05 Total: -34.08 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.74 Total: -2.10 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.57 kcal Total: -64.77 3.42 -61.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432702739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.787 kcal (2) G-P(sol) polarization free energy of solvation -64.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds