Wall clock time and date at job start Tue Mar 31 2020 05:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47528 * 2 1 4 4 S 1.81400 * 109.46895 * 240.00164 * 2 1 3 5 5 C 1.81406 * 102.99949 * 65.00147 * 4 2 1 6 6 C 1.53002 * 109.47126 * 179.97438 * 5 4 2 7 7 H 1.08994 * 109.46907 * 60.00226 * 6 5 4 8 8 O 1.42900 * 109.47088 * 299.99589 * 6 5 4 9 9 C 1.50696 * 109.46739 * 179.97438 * 6 5 4 10 10 H 1.08006 * 120.00591 * 359.97438 * 9 6 5 11 11 C 1.37880 * 119.99629 * 180.02562 * 9 6 5 12 12 N 1.31511 * 120.00105 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99884 * 180.02562 * 11 9 6 14 14 H 1.48504 * 109.47327 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47316 * 120.00102 * 13 11 9 16 16 H 1.48505 * 109.47213 * 239.99862 * 13 11 9 17 17 C 1.50696 * 109.47417 * 120.00643 * 2 1 3 18 18 C 1.38247 * 119.98658 * 240.00106 * 17 2 1 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 2 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38219 * 119.98930 * 359.40143 * 22 20 19 24 24 H 1.08992 * 109.47107 * 59.99194 * 1 2 3 25 25 H 1.08992 * 109.46984 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46754 * 299.99719 * 1 2 3 27 27 H 1.09004 * 109.47018 * 299.99971 * 5 4 2 28 28 H 1.09004 * 109.46962 * 59.99637 * 5 4 2 29 29 H 0.96699 * 114.00396 * 300.00545 * 8 6 5 30 30 H 0.97005 * 119.99741 * 179.97438 * 12 11 9 31 31 H 1.08003 * 119.99321 * 359.97438 * 18 17 2 32 32 H 1.08002 * 120.00776 * 180.02562 * 19 18 17 33 33 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 34 34 H 1.07997 * 119.99445 * 180.32231 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1346 -0.8551 -1.4812 5 6 1.5663 0.2155 -2.8309 6 6 2.0049 -0.3776 -4.1714 7 1 1.5715 -1.3708 -4.2884 8 8 3.4303 -0.4726 -4.2067 9 6 1.5322 0.5114 -5.2926 10 1 0.9745 1.4094 -5.0714 11 6 1.8110 0.1779 -6.6011 12 7 2.4897 -0.9159 -6.8706 13 14 1.2258 1.2802 -7.9910 14 1 0.4901 2.4402 -7.4265 15 1 2.3968 1.7652 -8.7648 16 1 0.3246 0.5114 -8.8867 17 6 2.0324 -0.7105 1.2303 18 6 2.8272 -0.0385 2.1402 19 6 3.2879 -0.6894 3.2691 20 6 2.9539 -2.0141 3.4882 21 17 3.5315 -2.8321 4.9062 22 6 2.1637 -2.6879 2.5741 23 6 1.6982 -2.0340 1.4488 24 1 -0.3633 0.5139 -0.8898 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.4791 0.2883 -2.8037 28 1 2.0001 1.2086 -2.7141 29 1 3.8836 0.3758 -4.1081 30 1 2.6855 -1.1507 -7.7912 31 1 3.0882 0.9955 1.9689 32 1 3.9084 -0.1642 3.9801 33 1 1.9064 -3.7233 2.7422 34 1 1.0771 -2.5585 0.7378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450823823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:12 Heat of formation + Delta-G solvation = -48.630140 kcal Electronic energy + Delta-G solvation = -17275.187674 eV Core-core repulsion = 14324.458747 eV Total energy + Delta-G solvation = -2950.728927 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.054 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.59671 -36.74345 -35.87084 -34.11045 -32.19229 -31.24125 -29.93744 -29.08253 -25.33499 -24.20344 -22.95085 -21.48971 -20.70516 -17.38968 -17.15062 -16.20691 -15.81639 -14.93100 -14.67767 -14.41648 -14.18216 -14.05087 -13.95401 -13.69382 -13.47580 -13.04377 -12.65272 -12.32923 -11.93218 -11.61722 -11.44463 -11.31774 -11.25327 -11.12400 -10.97490 -10.92276 -10.65743 -10.08453 -9.51891 -9.18718 -9.09518 -8.67164 -8.63710 -8.24909 -7.12636 -6.08548 -4.28840 0.88478 1.15014 1.95491 2.18957 3.15716 3.22212 3.30954 3.33576 3.54501 4.33028 4.48238 4.61314 4.72613 4.97853 5.14608 5.18520 5.23959 5.30625 5.51197 5.62177 5.72882 5.81117 5.84990 5.98751 6.04561 6.05649 6.13627 6.29186 6.41355 6.62660 6.64817 7.59004 7.74067 8.03374 8.73001 9.31567 9.49072 10.95302 Molecular weight = 286.05amu Principal moments of inertia in cm(-1) A = 0.044793 B = 0.002986 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.945133 B = 9375.105937 C = 9606.994284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 H 0.089 0.911 4 S -0.240 6.240 5 C -0.101 4.101 6 C 0.246 3.754 7 H 0.064 0.936 8 O -0.555 6.555 9 C -0.571 4.571 10 H 0.058 0.942 11 C 0.080 3.920 12 N -0.855 5.855 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.048 4.048 18 C -0.097 4.097 19 C -0.110 4.110 20 C -0.038 4.038 21 Cl -0.078 7.078 22 C -0.109 4.109 23 C -0.088 4.088 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.345 0.655 30 H 0.262 0.738 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 0.681 20.131 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 H 0.108 0.892 4 S -0.009 6.009 5 C -0.250 4.250 6 C 0.187 3.813 7 H 0.082 0.918 8 O -0.357 6.357 9 C -0.611 4.611 10 H 0.076 0.924 11 C -0.127 4.127 12 N -0.490 5.490 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.050 4.050 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.065 4.065 21 Cl -0.049 7.049 22 C -0.127 4.127 23 C -0.107 4.107 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.189 0.811 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.042 -1.108 19.955 20.013 hybrid contribution -0.866 2.309 -0.588 2.536 sum -1.908 1.202 19.367 19.498 Atomic orbital electron populations 1.22091 0.92665 1.03249 1.02173 1.22078 0.98712 1.01312 0.94360 0.89229 1.87317 1.75585 1.38813 0.99187 1.24644 1.02963 0.99889 0.97463 1.19146 0.79744 0.96845 0.85555 0.91835 1.86612 1.20001 1.33223 1.95912 1.21571 1.38570 1.09763 0.91187 0.92421 1.25044 0.93971 0.94851 0.98801 1.70093 1.36439 1.23140 1.19335 0.86556 0.78630 0.80712 0.82122 1.19693 1.20762 1.20767 1.19457 0.96945 0.94256 0.94308 1.21000 0.97052 1.00274 0.93374 1.20979 1.00712 0.92842 0.98389 1.20926 1.01243 0.93695 0.90616 1.98361 1.87911 1.79218 1.39433 1.21039 0.97632 1.00402 0.93658 1.21073 0.99284 0.93899 0.96483 0.91726 0.91269 0.92238 0.90647 0.91367 0.81106 0.92829 0.85051 0.84979 0.84879 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.91 37.16 0.33 -1.35 16 2 C -0.04 -0.48 3.01 -27.88 -0.08 -0.56 16 3 H 0.09 1.12 7.88 -51.92 -0.41 0.71 16 4 S -0.24 -4.25 20.40 -107.50 -2.19 -6.44 16 5 C -0.10 -2.00 5.27 37.16 0.20 -1.80 16 6 C 0.25 6.13 2.87 -27.88 -0.08 6.05 16 7 H 0.06 1.77 8.14 -51.93 -0.42 1.35 16 8 O -0.56 -14.27 12.33 -35.23 -0.43 -14.70 16 9 C -0.57 -15.23 8.76 -34.44 -0.30 -15.53 16 10 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 11 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 12 N -0.85 -24.95 12.84 55.43 0.71 -24.24 16 13 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.05 -0.59 4.78 -104.62 -0.50 -1.09 16 18 C -0.10 -1.05 9.67 -39.59 -0.38 -1.44 16 19 C -0.11 -1.14 9.83 -39.55 -0.39 -1.52 16 20 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 21 Cl -0.08 -0.78 28.96 -51.86 -1.50 -2.28 16 22 C -0.11 -1.19 9.83 -39.55 -0.39 -1.58 16 23 C -0.09 -1.05 8.78 -39.59 -0.35 -1.40 16 24 H 0.06 0.80 6.92 -51.93 -0.36 0.44 16 25 H 0.07 0.80 7.39 -51.93 -0.38 0.42 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.42 7.14 -51.92 -0.37 1.05 16 28 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 29 H 0.35 7.88 9.04 45.56 0.41 8.29 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.13 1.19 7.95 -52.48 -0.42 0.77 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.61 7.58 -52.49 -0.40 1.21 16 LS Contribution 319.31 15.07 4.81 4.81 Total: -1.00 -29.72 319.31 -9.50 -39.22 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -3.58 Total: 6.76 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.29 Total: -18.77 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.71 Total: -24.24 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.43 Total: -14.70 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -2.19 Total: -6.44 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.72 -9.50 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450823823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.410 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds