Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00350 * 2 1 4 4 H 1.48503 * 109.46973 * 270.00286 * 3 2 1 5 5 H 1.48502 * 109.47064 * 29.99518 * 3 2 1 6 6 H 1.48502 * 109.47575 * 149.99978 * 3 2 1 7 7 C 1.37885 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99658 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99973 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.64190 * 298.30473 * 9 7 2 11 11 C 1.54593 * 110.72243 * 61.45098 * 9 7 2 12 12 C 1.53993 * 105.13598 * 140.31463 * 11 9 7 13 13 N 1.47900 * 107.06279 * 1.22613 * 12 11 9 14 14 C 1.39211 * 111.00254 * 214.15567 * 13 12 11 15 15 N 1.32347 * 119.69834 * 239.84655 * 14 13 12 16 16 C 1.31997 * 121.65660 * 180.02562 * 15 14 13 17 17 C 1.38135 * 120.87564 * 359.74268 * 16 15 14 18 18 Cl 1.73601 * 120.33806 * 180.28385 * 17 16 15 19 19 C 1.38941 * 119.32453 * 0.51617 * 17 16 15 20 20 C 1.38494 * 118.47215 * 359.49473 * 19 17 16 21 21 F 1.35094 * 120.46327 * 180.23363 * 20 19 17 22 22 C 1.48534 * 105.81623 * 334.66945 * 13 12 11 23 23 H 0.96994 * 119.99906 * 0.02562 * 1 2 3 24 24 H 0.96689 * 114.00332 * 61.69420 * 10 9 7 25 25 H 1.09000 * 110.31028 * 21.40184 * 11 9 7 26 26 H 1.08994 * 110.39345 * 259.27129 * 11 9 7 27 27 H 1.09005 * 109.92152 * 241.87281 * 12 11 9 28 28 H 1.09006 * 109.91743 * 120.58048 * 12 11 9 29 29 H 1.07995 * 119.56049 * 180.02562 * 16 15 14 30 30 H 1.08002 * 120.76738 * 179.77714 * 19 17 16 31 31 H 1.09005 * 110.66774 * 157.63810 * 22 13 12 32 32 H 1.09003 * 110.66829 * 280.76631 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4496 -2.6182 1.1776 11 6 0.3796 -2.6277 -1.2699 12 6 0.5076 -4.1014 -1.6979 13 7 1.3770 -4.7680 -0.7043 14 6 2.1561 -5.7533 -1.3044 15 7 2.0495 -7.0094 -0.9014 16 6 2.7696 -7.9741 -1.4428 17 6 3.6635 -7.7054 -2.4611 18 17 4.5982 -8.9861 -3.1681 19 6 3.8105 -6.3988 -2.9103 20 6 3.0413 -5.4082 -2.3229 21 9 3.1484 -4.1251 -2.7318 22 6 2.2271 -3.6958 -0.1263 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2285 -1.9342 1.2625 25 1 0.7560 -1.9717 -2.0548 26 1 -0.6594 -2.3884 -1.0436 27 1 0.9602 -4.1627 -2.6877 28 1 -0.4754 -4.5724 -1.7064 29 1 2.6550 -8.9877 -1.0881 30 1 4.5052 -6.1619 -3.7026 31 1 2.6043 -3.9900 0.8532 32 1 3.0493 -3.4520 -0.7990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591976170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = -41.422762 kcal Electronic energy + Delta-G solvation = -20740.853591 eV Core-core repulsion = 17256.516775 eV Total energy + Delta-G solvation = -3484.336816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.12082 -40.45494 -38.29972 -36.87893 -34.84983 -32.47605 -32.15352 -30.98511 -28.38184 -28.14707 -24.88733 -23.88098 -23.01544 -20.76855 -19.70353 -17.90821 -17.79799 -17.33951 -16.54079 -15.91899 -15.50664 -14.96578 -14.74192 -14.29216 -14.11122 -13.78694 -13.41819 -13.23535 -13.07419 -12.51442 -12.20368 -11.88465 -11.64790 -11.50469 -11.34458 -11.09333 -10.78708 -10.54482 -10.44970 -10.10067 -9.90346 -9.82828 -9.31494 -8.76834 -8.62359 -8.20397 -8.04458 -6.24587 -4.32898 0.55836 0.79529 1.67543 3.20785 3.28240 3.29152 3.32254 3.62185 3.89893 4.28795 4.41800 4.44660 4.74068 5.02707 5.21739 5.28210 5.49998 5.59811 5.76478 5.82660 5.98804 6.11163 6.31236 6.43718 6.71586 6.90704 7.13831 7.24151 7.39536 7.43836 7.76543 7.90637 8.10183 8.69148 9.35874 9.50844 10.82773 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.034164 B = 0.004401 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.369773 B = 6360.554604 C = 6778.190239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.263 3.737 10 O -0.578 6.578 11 C -0.126 4.126 12 C 0.042 3.958 13 N -0.473 5.473 14 C 0.301 3.699 15 N -0.426 5.426 16 C 0.115 3.885 17 C -0.080 4.080 18 Cl -0.051 7.051 19 C -0.098 4.098 20 C 0.032 3.968 21 F -0.110 7.110 22 C 0.053 3.947 23 H 0.268 0.732 24 H 0.379 0.621 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.174 0.826 30 H 0.155 0.845 31 H 0.080 0.920 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 -12.937 -7.044 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.222 3.778 10 O -0.386 6.386 11 C -0.164 4.164 12 C -0.084 4.084 13 N -0.196 5.196 14 C 0.068 3.932 15 N -0.135 5.135 16 C -0.044 4.044 17 C -0.109 4.109 18 Cl -0.022 7.022 19 C -0.126 4.126 20 C 0.006 3.994 21 F -0.089 7.089 22 C -0.073 4.073 23 H 0.078 0.922 24 H 0.229 0.771 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.191 0.809 30 H 0.173 0.827 31 H 0.098 0.902 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.124 -13.851 -5.931 15.915 hybrid contribution 1.317 2.010 -1.707 2.948 sum 6.441 -11.841 -7.639 15.493 Atomic orbital electron populations 1.69722 1.05918 1.27556 1.50053 1.24978 0.94989 0.99404 0.93609 0.86460 0.79927 0.82647 0.78192 1.20530 1.20994 1.19733 1.21537 0.93598 0.90461 1.52041 0.91994 1.19241 0.86469 0.89907 0.82157 1.86148 1.51530 1.56229 1.44731 1.22952 1.02395 0.90432 1.00668 1.23096 0.96179 0.97194 0.91941 1.61890 1.18073 1.10503 1.29106 1.20603 0.91200 0.92017 0.89384 1.67693 1.21300 0.98935 1.25527 1.22835 0.90679 0.99409 0.91511 1.21857 0.99362 0.89930 0.99742 1.98382 1.71696 1.49058 1.83060 1.21520 0.99640 0.90609 1.00788 1.19618 1.00595 0.80441 0.98726 1.91582 1.94751 1.33576 1.88944 1.23518 0.95277 0.89556 0.98908 0.92249 0.77117 0.91398 0.90834 0.94363 0.90838 0.80919 0.82704 0.90210 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.38 11.00 55.43 0.61 -22.77 16 2 C 0.07 1.89 5.28 -17.82 -0.09 1.80 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.20 8.14 -34.44 -0.28 -14.48 16 8 H 0.06 1.63 7.78 -52.48 -0.41 1.22 16 9 C 0.26 6.49 0.95 -89.91 -0.09 6.40 16 10 O -0.58 -15.11 13.10 -35.23 -0.46 -15.57 16 11 C -0.13 -2.86 5.26 -25.38 -0.13 -2.99 16 12 C 0.04 0.83 6.20 -2.76 -0.02 0.82 16 13 N -0.47 -9.71 5.37 -169.13 -0.91 -10.61 16 14 C 0.30 5.34 5.86 -154.81 -0.91 4.43 16 15 N -0.43 -6.95 10.39 -12.33 -0.13 -7.07 16 16 C 0.11 1.41 10.97 -17.52 -0.19 1.22 16 17 C -0.08 -0.91 6.34 -39.36 -0.25 -1.16 16 18 Cl -0.05 -0.47 28.98 -51.86 -1.50 -1.97 16 19 C -0.10 -1.22 9.96 -39.23 -0.39 -1.61 16 20 C 0.03 0.50 6.21 -39.10 -0.24 0.26 16 21 F -0.11 -1.91 13.48 2.25 0.03 -1.88 16 22 C 0.05 1.17 5.39 -1.90 -0.01 1.16 16 23 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 24 H 0.38 9.90 7.46 45.56 0.34 10.24 16 25 H 0.07 1.60 7.84 -51.93 -0.41 1.20 16 26 H 0.07 1.74 7.99 -51.93 -0.41 1.32 16 27 H 0.04 0.71 6.02 -51.93 -0.31 0.40 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.06 1.34 5.60 -51.93 -0.29 1.05 16 LS Contribution 287.13 15.07 4.33 4.33 Total: -1.00 -27.65 287.13 -7.98 -35.63 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -2.32 Total: 8.76 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.60 Total: -4.15 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -0.43 Total: -40.46 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.46 Total: -15.57 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.03 Total: -1.88 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.65 -7.98 -35.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.795 kcal (2) G-P(sol) polarization free energy of solvation -27.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds