Wall clock time and date at job start Tue Mar 31 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48505 * 109.47041 * 90.00185 * 3 2 1 5 5 H 1.48498 * 109.47207 * 330.00383 * 3 2 1 6 6 H 1.48498 * 109.47070 * 210.00140 * 3 2 1 7 7 C 1.37879 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99684 * 342.88987 * 7 2 1 9 9 C 1.50697 * 120.00084 * 162.89206 * 7 2 1 10 10 H 1.09002 * 109.50517 * 54.58587 * 9 7 2 11 11 C 1.53118 * 109.50411 * 294.50621 * 9 7 2 12 12 C 1.53123 * 109.16174 * 182.40360 * 11 9 7 13 13 C 1.53041 * 109.27643 * 57.65272 * 12 11 9 14 14 N 1.46840 * 109.52596 * 300.82086 * 13 12 11 15 15 C 1.46903 * 111.00469 * 185.83969 * 14 13 12 16 16 C 1.50702 * 109.46792 * 66.04559 * 15 14 13 17 17 N 1.28991 * 124.90249 * 90.00205 * 16 15 14 18 18 C 1.31828 * 117.13244 * 179.97438 * 17 16 15 19 19 C 1.33751 * 114.46256 * 0.02562 * 18 17 16 20 20 Cl 1.73600 * 126.04428 * 179.97438 * 19 18 17 21 21 S 1.70974 * 124.89869 * 269.70024 * 16 15 14 22 22 C 1.46854 * 111.19957 * 61.74001 * 14 13 12 23 23 H 0.97000 * 119.99801 * 174.69516 * 1 2 3 24 24 H 1.08997 * 109.52224 * 302.30677 * 11 9 7 25 25 H 1.08996 * 109.52622 * 62.43674 * 11 9 7 26 26 H 1.08996 * 109.50433 * 177.59457 * 12 11 9 27 27 H 1.09000 * 109.50094 * 297.67434 * 12 11 9 28 28 H 1.08999 * 109.46132 * 60.84022 * 13 12 11 29 29 H 1.09000 * 109.46006 * 180.81256 * 13 12 11 30 30 H 1.08997 * 109.47139 * 186.04511 * 15 14 13 31 31 H 1.09001 * 109.46493 * 306.04934 * 15 14 13 32 32 H 1.08000 * 122.76376 * 180.02562 * 18 17 16 33 33 H 1.08997 * 109.45992 * 178.24207 * 22 14 13 34 34 H 1.09003 * 109.45808 * 58.27590 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6527 -0.6999 6 1 3.5467 1.4402 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.5004 -2.1088 0.2742 9 6 3.4615 -1.2228 -0.3845 10 1 4.0153 -0.5181 0.2359 11 6 3.6098 -0.8330 -1.8578 12 6 5.0857 -0.9229 -2.2554 13 6 5.5941 -2.3424 -1.9933 14 7 5.4313 -2.6672 -0.5706 15 6 6.0348 -3.9688 -0.2552 16 6 7.5287 -3.8867 -0.4356 17 7 8.3663 -3.5526 0.4868 18 6 9.6433 -3.5314 0.1604 19 6 9.8959 -3.8664 -1.1097 20 17 11.4621 -3.9369 -1.8553 21 16 8.3587 -4.2301 -1.8903 22 6 4.0170 -2.6336 -0.1766 23 1 -0.4850 -0.8365 -0.0777 24 1 3.0241 -1.5139 -2.4754 25 1 3.2541 0.1871 -2.0023 26 1 5.1923 -0.6879 -3.3144 27 1 5.6655 -0.2133 -1.6650 28 1 5.0229 -3.0495 -2.5949 29 1 6.6486 -2.4059 -2.2619 30 1 5.8075 -4.2341 0.7773 31 1 5.6294 -4.7286 -0.9233 32 1 10.4213 -3.2655 0.8607 33 1 3.9261 -2.9086 0.8742 34 1 3.4532 -3.3394 -0.7867 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595619957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:44 Heat of formation + Delta-G solvation = 38.139243 kcal Electronic energy + Delta-G solvation = -18137.784003 eV Core-core repulsion = 15223.110430 eV Total energy + Delta-G solvation = -2914.673573 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99932 -38.45411 -37.10019 -34.22840 -32.33933 -30.49626 -30.12713 -27.26896 -24.75365 -24.24745 -22.34957 -21.31264 -19.90926 -18.86541 -18.41468 -17.50208 -16.23471 -15.93187 -14.84843 -14.75173 -14.40429 -13.99199 -13.88650 -13.46974 -13.13491 -12.67652 -12.52314 -12.43557 -12.19836 -11.93861 -11.72686 -11.31608 -11.12307 -10.68060 -10.60676 -10.17025 -9.86485 -9.81257 -9.67981 -9.49530 -9.23286 -9.05454 -8.72836 -8.23935 -8.00866 -6.42850 -4.05561 0.30153 0.61393 1.34365 1.90264 2.52599 3.45855 3.48436 3.63955 3.91386 4.28315 4.53986 4.79769 4.96811 5.19036 5.25796 5.35582 5.49370 5.55802 5.75668 5.77937 5.93256 6.09117 6.23706 6.31083 6.42025 6.61236 6.80866 6.87618 7.25080 7.35078 7.40258 7.48084 7.62207 8.18270 8.38950 8.90682 9.62182 10.95359 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.035837 B = 0.003795 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.117265 B = 7376.933367 C = 7521.010734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.034 3.966 3 Si 1.041 2.959 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.599 4.599 8 H 0.054 0.946 9 C 0.028 3.972 10 H 0.032 0.968 11 C -0.118 4.118 12 C -0.118 4.118 13 C 0.053 3.947 14 N -0.532 5.532 15 C 0.124 3.876 16 C 0.080 3.920 17 N -0.450 5.450 18 C 0.063 3.937 19 C -0.205 4.205 20 Cl -0.002 7.002 21 S 0.163 5.837 22 C 0.079 3.921 23 H 0.267 0.733 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.183 0.817 33 H 0.069 0.931 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.866 -9.218 -5.030 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.170 4.170 3 Si 0.869 3.131 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.638 4.638 8 H 0.073 0.927 9 C 0.008 3.992 10 H 0.050 0.950 11 C -0.156 4.156 12 C -0.156 4.156 13 C -0.075 4.075 14 N -0.258 5.258 15 C -0.007 4.007 16 C -0.198 4.198 17 N -0.164 5.164 18 C -0.091 4.091 19 C -0.353 4.353 20 Cl 0.026 6.974 21 S 0.416 5.584 22 C -0.047 4.047 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.074 0.926 32 H 0.200 0.800 33 H 0.087 0.913 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 19.516 -7.432 -5.232 21.529 hybrid contribution 0.699 -2.056 -0.012 2.172 sum 20.215 -9.488 -5.245 22.939 Atomic orbital electron populations 1.70817 1.07206 1.30419 1.45779 1.25732 0.96008 1.02438 0.92870 0.84128 0.75951 0.75682 0.77293 1.21337 1.21516 1.19374 1.21945 0.94227 0.96337 1.51252 0.92745 1.19041 0.96554 0.91465 0.92102 0.94980 1.22057 0.92530 1.01227 0.99808 1.21644 0.98938 0.95228 0.99741 1.22212 0.99500 0.97982 0.87852 1.62005 1.18846 1.26347 1.18598 1.20716 0.83820 0.92486 1.03699 1.27189 1.01303 0.99947 0.91363 1.66450 1.00846 1.15746 1.33377 1.21959 0.93505 1.00332 0.93340 1.26953 0.92776 1.17423 0.98138 1.98364 1.20727 1.97141 1.81197 1.84186 0.95570 1.62927 1.15713 1.22189 0.82827 1.00186 0.99521 0.92275 0.93247 0.92446 0.92695 0.91803 0.95031 0.92147 0.87338 0.92614 0.80049 0.91252 0.95480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.66 13.70 55.43 0.76 -26.90 16 2 C 0.03 0.98 5.35 -17.82 -0.10 0.88 16 3 Si 1.04 25.09 26.31 -169.99 -4.47 20.62 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -5.95 5.50 56.52 0.31 -5.64 16 7 C -0.60 -16.40 8.83 -34.44 -0.30 -16.71 16 8 H 0.05 1.59 7.99 -52.48 -0.42 1.18 16 9 C 0.03 0.64 1.81 -91.69 -0.17 0.48 16 10 H 0.03 0.78 6.71 -51.93 -0.35 0.43 16 11 C -0.12 -2.50 4.72 -26.61 -0.13 -2.62 16 12 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16 13 C 0.05 0.83 5.27 -3.84 -0.02 0.81 16 14 N -0.53 -9.01 4.65 -236.11 -1.10 -10.11 16 15 C 0.12 1.71 5.55 -4.97 -0.03 1.68 16 16 C 0.08 1.07 6.17 -13.47 -0.08 0.99 16 17 N -0.45 -6.35 10.54 -11.83 -0.12 -6.47 16 18 C 0.06 0.73 11.32 -19.13 -0.22 0.52 16 19 C -0.20 -2.25 7.21 29.16 0.21 -2.04 16 20 Cl 0.00 -0.02 29.31 -51.86 -1.52 -1.54 16 21 S 0.16 1.79 21.53 -107.50 -2.31 -0.52 16 22 C 0.08 1.55 4.68 -3.83 -0.02 1.53 16 23 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.27 5.09 -51.93 -0.26 1.00 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.86 5.70 -51.93 -0.30 0.56 16 30 H 0.11 1.46 7.98 -51.93 -0.41 1.05 16 31 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.07 1.36 8.01 -51.93 -0.42 0.94 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 299.84 15.07 4.52 4.52 Total: -1.00 -29.75 299.84 -9.62 -39.37 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.36 Total: -2.28 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -1.01 Total: -16.69 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.46 Total: -43.48 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -4.47 Total: 20.62 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.31 Total: -0.52 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.52 Total: -1.54 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.75 -9.62 -39.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.513 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds